mRNA_Ecto-sp13_S_contig15330.4006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15330.4006.1
Unique NamemRNA_Ecto-sp13_S_contig15330.4006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: D7FWL2_ECTSI (Pc21g14320 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL2_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.240e-53
Identity = 142/168 (84.52%), Postives = 145/168 (86.31%), Query Frame = 1 
Query:  268 MQLLRSSLSDSRAGGDDRGAAATAXXAASSLHQRDVDNAGAGAGGAFQYSPAKNATDSGAPAPGLAPLATVSSAGT-ATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRQEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            MQ LRSSLSDS AGGD        XX  SSLHQR VDNAGAGA GA  Y  A NA +SGAPAPGLAPLATVSSAGT A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RQEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYR+
Sbjct:    1 MQFLRSSLSDSSAGGDGXXXXXXXXXXXSSLHQRHVDNAGAGASGASPYPAANNAANSGAPAPGLAPLATVSSAGTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRS 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: A0A6H5K7D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.410e-33
Identity = 163/227 (71.81%), Postives = 166/227 (73.13%), Query Frame = 1 
Query:    1 GRMAAGDGGGSANGAPQGQSVAANGHGHGAFHYRHTMHQNGGDXXXXXXXXXXXXXXXXXXXXXXCNKVVGAPTVTAAAAAA--GRTGLDDMQLLRSSLSDSRAGGDDRGAAATAXXAASSLHQRDVDNAGAGAGGAFQYSPAKNATDSGAPAPGLAPLATVSSAGTATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCR-----QEEERCKICHMGSVDAL 660
            GRMA GDGGGS NGAPQGQSVAANGH   AF            XXXXXXXXXXXXXXXXXXXXXX NKVVGAPT          GRTGLDDMQ LRSSLSDS AGGD R      XX    LHQRDVDNAGAG GGA QYS AKNA DSGAPAPGLAPLATVSS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ++EERCKICHMG   A+
Sbjct:  138 GRMATGDGGGSTNGAPQGQSVAANGHXXXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKVVGAPTXXXXXXXXXXGRTGLDDMQFLRSSLSDSSAGGDGRXXXXXXXXXXXRLHQRDVDNAGAGXGGASQYSAAKNAADSGAPAPGLAPLATVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQEERCKICHMGVTGAV 364
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: K1R7V0_CRAGI (Baculoviral IAP repeat-containing protein 3 n=4 Tax=Crassostrea gigas TaxID=29159 RepID=K1R7V0_CRAGI)

HSP 1 Score: 70.1 bits (170), Expect = 7.690e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  610 QEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            QEE++CKIC    +D L  PCGHLC C SCAS+L VCPICR  I ++  VYR+
Sbjct:  293 QEEKQCKICLDSEMDTLFEPCGHLCTCRSCASMLRVCPICRKHIKKLHRVYRS 345
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: UPI00148A7F73 (kinesin-like protein KIN-7M, chloroplastic isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A7F73)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-9
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  610 QEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            QEE++CKIC    +D L  PCGHLC C SCAS+L +CPICR  I ++  VYR+
Sbjct:  333 QEEKQCKICLDSEMDTLFEPCGHLCTCRSCASMLQMCPICRKQIKKLHRVYRS 385
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: UPI00148A8D4C (uncharacterized protein LOC105343064 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8D4C)

HSP 1 Score: 67.8 bits (164), Expect = 5.180e-9
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  607 RQEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            ++EE +CKIC    +D L  PCGHLC C SCAS+L VCPICR  I ++  VYR+
Sbjct:  318 QEEENQCKICLDSEMDTLFEPCGHLCTCGSCASMLRVCPICRNHIKKLHRVYRS 371
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: A0A7K5WEX3_9SYLV (XIAP ligase (Fragment) n=1 Tax=Hylia prasina TaxID=208073 RepID=A0A7K5WEX3_9SYLV)

HSP 1 Score: 63.9 bits (154), Expect = 1.190e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  610 QEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVY 762
            QEE+ CKIC    V  + +PCGHL AC  CA +L  CP+CRADI ++Q ++
Sbjct:  394 QEEKLCKICMAKDVSVVFIPCGHLVACKECAQLLSECPLCRADITKIQDIF 444
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: A0A7S0ANI1_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ANI1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 4.210e-5
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:  610 QEEERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADI 741
            +EE+ C +C       L +PC HLC C +CAS LVVCPICRA I
Sbjct:  307 EEEQACVVCSELEKTVLFMPCRHLCTCEACASQLVVCPICRAQI 350
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: A7SA58_NEMVE (RING-type E3 ubiquitin transferase n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SA58_NEMVE)

HSP 1 Score: 55.1 bits (131), Expect = 7.110e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  622 RCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            +C IC     + +LL CGH+C+C +CA  +  CP+CR DI R+ P+Y++
Sbjct:  294 QCVICLENQRNVVLLNCGHVCSCRTCAQQIHQCPVCRGDIVRMVPIYQS 342
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Match: A0A8J2R959_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2R959_9NEOP)

HSP 1 Score: 55.1 bits (131), Expect = 8.950e-5
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:  616 EERCKICHMGSVDALLLPCGHLCACHSCASVLVVCPICRADIYRVQPVYRA 768
            E+ CKIC    ++ +LL CGH+ AC SCA  L  CPICR  + R   V+R+
Sbjct:  391 EDSCKICMAAPLECVLLECGHIAACTSCARQLAECPICRQYVVRAVRVFRS 441
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15330.4006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWL2_ECTSI3.240e-5384.52Pc21g14320 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K7D6_9PHAE1.410e-3371.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K1R7V0_CRAGI7.690e-1058.49Baculoviral IAP repeat-containing protein 3 n=4 Ta... [more]
UPI00148A7F731.260e-956.60kinesin-like protein KIN-7M, chloroplastic isoform... [more]
UPI00148A8D4C5.180e-955.56uncharacterized protein LOC105343064 isoform X1 n=... [more]
A0A7K5WEX3_9SYLV1.190e-750.98XIAP ligase (Fragment) n=1 Tax=Hylia prasina TaxID... [more]
A0A7S0ANI1_9DINO4.210e-554.55Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A7SA58_NEMVE7.110e-542.86RING-type E3 ubiquitin transferase n=1 Tax=Nematos... [more]
A0A8J2R959_9NEOP8.950e-547.06(African queen) hypothetical protein n=1 Tax=Danau... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15330contigEcto-sp13_S_contig15330:109..1749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1001
Hectar predicted targeting categoryother localisation
Exons2
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.9732862-UTR-Ecto-sp13_S_contig15330:108..2621681462815.9732862-UTR-Ecto-sp13_S_contig15330:108..262Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15330 109..262 -
1681462816.004674-UTR-Ecto-sp13_S_contig15330:1436..17491681462816.004674-UTR-Ecto-sp13_S_contig15330:1436..1749Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15330 1437..1749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.9838722-CDS-Ecto-sp13_S_contig15330:262..4651681462815.9838722-CDS-Ecto-sp13_S_contig15330:262..465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15330 263..465 -
1681462815.9941652-CDS-Ecto-sp13_S_contig15330:1105..14361681462815.9941652-CDS-Ecto-sp13_S_contig15330:1105..1436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15330 1106..1436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15330.4006.1prot_Ecto-sp13_S_contig15330.4006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15330 263..1436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15330.4006.1

>prot_Ecto-sp13_S_contig15330.4006.1 ID=prot_Ecto-sp13_S_contig15330.4006.1|Name=mRNA_Ecto-sp13_S_contig15330.4006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MIGVPQQRQRRRRLACTSEMSTTPAPAPAAPSSIPPPKTPPIPVPLPRDW
LPWRLFLRQALPPLPPQQLPRVSATATMMNAPLRGNPLTAAAVVVVVVGK
RRSVARSATWGRSTRCFYRAGTCAPATRAPPFWSFVPSAARTSTAYSPCT
GPDIYKEEEVFFFFEVYEGVECVIQGF*
back to top

mRNA from alignment at Ecto-sp13_S_contig15330:109..1749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15330.4006.1 ID=mRNA_Ecto-sp13_S_contig15330.4006.1|Name=mRNA_Ecto-sp13_S_contig15330.4006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15330:109..1749- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGGATGGCGGCCGGCGATGGCGGAGGGTCGGCCAACGGCGCGCCCCA
AGGCCAGTCGGTCGCAGCGAACGGCCACGGCCACGGCGCTTTCCACTACC
GCCACACCATGCACCAGAACGGCGGCGACACGAGCAGCAGCAGTAGCACC
AGTAGCCCTAGCAGCACCAGCAACGCCAGCAGCAGCGGCAGTGGCTGTAA
CAAGGTCGTGGGAGCGCCGACAGTGACCGCCGCCGCCGCCGCCGCAGGGC
GGACGGGGCTCGACGACATGCAGCTCCTGCGGAGCAGCCTTTCGGACTCG
AGAGCGGGCGGTGATGATCGGGGTGCCGCAGCAACGGCAGCGTCGGCGGC
GTCTAGCCTGCACCAGCGAGATGTCGACAACGCCGGCGCCGGCGCCGGCG
GCGCCTTCCAGTATTCCCCCGCCAAAAACGCCACCGATTCCGGTGCCCCT
GCCCCGGGACTGGCTCCCCTGGCGACTGTTTCTTCGGCAGGCACTGCCAC
CCCTGCCGCCGCAGCAGCTTCCTCGGGTGTCGGCGACGGCGACGATGATG
AACGCTCCACTACGAGGAAACCCGCTGACGGCAGCGGCGGTGGTGGTGGT
GGTTGTCGGCAAGAGGAGGAGCGTTGCAAGATCTGCCACATGGGGTAAGT
GAACGAGTAGTGGGTGGTGTAGCGACAGGGGGATTTTGTCGCGGAAAAGA
CCGGGACTAGGTACACTGCCTAGAGGGGGGATTGGTCGTGCTTTTCTCGT
GCAACGGAGGAGCCAGGAGTTCTGCAGGACTGAACTACACACACACAGGA
GGTAGATGAAACAGTTTTTTTGTTCCTGAAAGAGGGCATACGTAAATAAT
CATAGCAGGGATGAGATAGAGAGTCGCTTTTGGTCTTGTAACTCGTAATC
ACCTCCCGTGGACGACAAGCGGAGTCCTCCTCCCTTTTTTCTGGCGATCC
TCTTCCAGAGAAACGCTTCCGTTGCCACCCTCGCCCTGAAAGCCGGAAAT
AATCTGTAAATGGTAGCCGTCGCCGCCGTCGCCGCCGTCGCTACCGCCCG
AGGCGATGCCCATTACACTCAACCCGAAGAACTCTTGACGTACAGTAGTC
GTGGGCGCGGTTTAGCGGCCCCCTGTTTAGCTACATGCCCTGTGTAGCGA
CCACAAAAATCGCATGGCTCTAAAATAGCCGCTCCTCCGGCAGTAGTAGT
GGCAGCCACCATTATCCTCTCCTGACAACCAAGTCTCGGCTCCCAACGCG
ATGGCCGACTGTATCCCACGTGCTACATACGCAGGTCGGTCGACGCGCTG
CTTCTACCGTGCGGGCACCTGTGCGCCTGCCACTCGTGCGCCTCCGTTCT
GGTCGTTTGTCCCATCTGCCGCGCGGACATCTACCGCGTACAGCCCGTGT
ACCGGGCCTGATATATATAAAGAAGAAGAAGTATTTTTCTTTTTTGAGGT
TTACGAGGGAGTCGAATGTGTCATTCAAGGTTTTTGATTCCAACTCCTCC
GTGACTCCGTGACTTTATATCGAGCTCCGTTTCAAATGTCGACTACAACT
AGTAACAAATTATGTTTTGATGTTGTTCGAAGTTCTGGTCCTGCTTTTGG
TTGAGGGTTGTTGACTTCCTTCCATTTATTCAGGGTTTCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15330:109..1749-

>mRNA_Ecto-sp13_S_contig15330.4006.1 ID=mRNA_Ecto-sp13_S_contig15330.4006.1|Name=mRNA_Ecto-sp13_S_contig15330.4006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15330:109..1749- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGGGGTGCCGCAGCAACGGCAGCGTCGGCGGCGTCTAGCCTGCAC
CAGCGAGATGTCGACAACGCCGGCGCCGGCGCCGGCGGCGCCTTCCAGTA
TTCCCCCGCCAAAAACGCCACCGATTCCGGTGCCCCTGCCCCGGGACTGG
CTCCCCTGGCGACTGTTTCTTCGGCAGGCACTGCCACCCCTGCCGCCGCA
GCAGCTTCCTCGGGTGTCGGCGACGGCGACGATGATGAACGCTCCACTAC
GAGGAAACCCGCTGACGGCAGCGGCGGTGGTGGTGGTGGTTGTCGGCAAG
AGGAGGAGCGTTGCAAGATCTGCCACATGGGGTCGGTCGACGCGCTGCTT
CTACCGTGCGGGCACCTGTGCGCCTGCCACTCGTGCGCCTCCGTTCTGGT
CGTTTGTCCCATCTGCCGCGCGGACATCTACCGCGTACAGCCCGTGTACC
GGGCCTGATATATATAAAGAAGAAGAAGTATTTTTCTTTTTTGAGGTTTA
CGAGGGAGTCGAATGTGTCATTCAAGGTTTTTGA
back to top