mRNA_Ecto-sp13_S_contig15323.4005.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15323.4005.1
Unique NamemRNA_Ecto-sp13_S_contig15323.4005.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15323.4005.1 vs. uniprot
Match: D7FN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN61_ECTSI)

HSP 1 Score: 538 bits (1386), Expect = 1.060e-186
Identity = 297/305 (97.38%), Postives = 300/305 (98.36%), Query Frame = 1 
Query:    1 HGPDARLWEIDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPGXXXXXXXXXXXXXXXXXXXXXX--VSEEEFVFVERKPEWDKVYVQQTRGGIRAGFQSDASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEELMTYTGFLAVAPKCFASFSKDNLYFEDVRRGVMARLGRLSNDELAADEEAVMAIMSSLGVVMSAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEVTIRNATR 909
            HGP+ARLWE+DLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSP XXXXXXXXXXXXXXXXXXXXXX  VSEEEF+FVERKPEWDKVYVQQTRGGIRAGFQSDASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEE  TYTGFLAVAPKCFASFSKDNLYFEDVRRGVMARLGRLSNDELAADEEAVMAIMSSLGVVMSAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEVTIRNATR
Sbjct:  364 HGPEARLWEMDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPXXXXXXXXXXXXXXXXXXXXXXXXGVSEEEFLFVERKPEWDKVYVQQTRGGIRAGFQSDASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEEFTTYTGFLAVAPKCFASFSKDNLYFEDVRRGVMARLGRLSNDELAADEEAVMAIMSSLGVVMSAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEVTIRNATR 668
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BLAST of mRNA_Ecto-sp13_S_contig15323.4005.1 vs. uniprot
Match: A0A7R9U6L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6L2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.150e-9
Identity = 73/295 (24.75%), Postives = 120/295 (40.68%), Query Frame = 1 
Query:   13 ARLWEIDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPA-PMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPGXXXXXXXXXXXXXXXXXXXXXXVSEEEFVFVERKPEWDKVYVQQTR--GGIRAGFQSDASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEELMTYTGFLAVAPKCFASFSKDNLYFEDVRRGVMARLGRLSNDELAADEEAVMAIMSSLGVVMSAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEV 888
            +R W +DLP F+E C++S   D   LP + D  + +++++   +     P+   +LQ   RL   D+ C ++Y  Y  S G  D  A                          V E +     R+    +V V      G +R GF+  ASR+ +      G  G    + S  +       +S    +    FL    K F     D L    V    +  +   SND       A+  I+  L ++++ +    N  E +E+F +  A +LI CP LN RI+GV+ ++D+I V
Sbjct:   42 SRFWVVDLPHFVEACMTSQYEDPSVLPIVMDFLRYLMDVVVDNIGNTQRPVMPEILQQFHRLCGVDQHCAYFYDRY--SKGHIDSIA------------------------EYVDEPQDYLAFRQNTGVRVLVGMMNYMGRLR-GFELIASRIGL------GSDGPSGPVCSLTEVDYYVRTISYLRTLYTKPFLKSYFKTFHEVVLDRLI--SVSDDELKSISPSSND-------AIETIVHQLEILVNDVRPDLNSEEIIEKFKMRMAKRLIICPLLNYRIKGVSHINDMISV 294
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BLAST of mRNA_Ecto-sp13_S_contig15323.4005.1 vs. uniprot
Match: A0A7S1UK73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK73_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.340e-8
Identity = 65/300 (21.67%), Postives = 122/300 (40.67%), Query Frame = 1 
Query:    4 GPDARLWEIDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWK-PAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPGXXXXXXXXXXXXXXXXXXXXXXVSEEEFVFVERKPEWDKVYVQQTRG-GIRAGFQSDASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEELMTYTGFLAVAPKCFAS-FSKDNLY-FEDVRRGVMARLGRLSNDELA-ADEEAVMAIMSSLGVVMSAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEV 888
            G     W +DLP F+E C++S+  D   LP + D  + V+++I   +     P+   +LQ   RL   D+ C ++Y  Y R         L                            ++++ V R+    K+ V      G R GF+   +R+ + N +  G                 A   S+ EL  Y   +      +A  F+K     F ++    ++ +       +    ++A+  ++S L +++  +    N  E +E+F +  A +LI CP LN RI+GV+ ++D++ +
Sbjct:   16 GSPGSFWVVDLPNFVEACMTSNFEDPGVLPLVLDALRYVMDVILDNIEDIDRPVMPEILQQFHRLSGVDQHCNYFYNRYARGHVDSIAEYLE-------------------------EPQDYLVVHRQYSNLKLLVSMMNYMGRRRGFEIIFNRIGMYNGDGSG-----------------APVCSLTELEYYIRAITYLRVLYAKPFTKKYFRTFHEILLTRLSNVSDDELKAITPGSKDAIETVVSQLEMLLRDVRQDLNAEEIIEKFKMRMAKRLIVCPLLNYRIKGVSHINDVLAI 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15323.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN61_ECTSI1.060e-18697.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U6L2_9STRA3.150e-924.75Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1UK73_9STRA5.340e-821.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15323contigEcto-sp13_S_contig15323:1267..3734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size914
Hectar predicted targeting categoryother localisation
Exons5
Cds size912
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.9009712-CDS-Ecto-sp13_S_contig15323:1266..13801681462815.9009712-CDS-Ecto-sp13_S_contig15323:1266..1380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 1267..1380 +
1681462815.9098203-CDS-Ecto-sp13_S_contig15323:1662..19951681462815.9098203-CDS-Ecto-sp13_S_contig15323:1662..1995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 1663..1995 +
1681462815.9183915-CDS-Ecto-sp13_S_contig15323:2326..25111681462815.9183915-CDS-Ecto-sp13_S_contig15323:2326..2511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 2327..2511 +
1681462815.9278774-CDS-Ecto-sp13_S_contig15323:2737..28791681462815.9278774-CDS-Ecto-sp13_S_contig15323:2737..2879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 2738..2879 +
1681462815.9376452-CDS-Ecto-sp13_S_contig15323:3596..37341681462815.9376452-CDS-Ecto-sp13_S_contig15323:3596..3734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 3597..3734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15323.4005.1prot_Ecto-sp13_S_contig15323.4005.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15323 1267..3734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15323.4005.1

>prot_Ecto-sp13_S_contig15323.4005.1 ID=prot_Ecto-sp13_S_contig15323.4005.1|Name=mRNA_Ecto-sp13_S_contig15323.4005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
HGPDARLWEIDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWK
PAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPGAGAGGG
GGGGAGGGGSGGGTGGVSEEEFVFVERKPEWDKVYVQQTRGGIRAGFQSD
ASRLYVANMNHFGRAGGYAAILSRIDPSRAAGPVSIEELMTYTGFLAVAP
KCFASFSKDNLYFEDVRRGVMARLGRLSNDELAADEEAVMAIMSSLGVVM
SAIDMKFNRTENLERFHVMFAIQLIRCPFLNPRIRGVTVLSDIIEVTIRN
ATR*
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mRNA from alignment at Ecto-sp13_S_contig15323:1267..3734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15323.4005.1 ID=mRNA_Ecto-sp13_S_contig15323.4005.1|Name=mRNA_Ecto-sp13_S_contig15323.4005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15323:1267..3734+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGGCCCGGACGCCCGTTTGTGGGAGATAGACTTGCCGGCGTTCATCGA
GCGCTGCCTGTCGTCTTCGATTAACGATCTACAAGCCCTGCCGTTCATCA
ACGATCTGTTCAAGGTGCGCTGTTCGTGTTGTAGGGCTGACGTCGTAACG
GTCTCGTGCCACCGCAGGGTAGTTTGTGAGTAGGTCACCTACAACAGCAG
CGCGGAAGGACCGCTCATGGATCGATTTGTTTGAAAATCGGGCGAATTTC
TTCCCTCGAAAAGAGGTACACGGTGTGGCGCTGTGTAAGCCTTTGTTGTG
CGCACGGAGCACGATTCTCATTGGCCTCGCCACTTATGCCTGCCTGCCTA
CCTCCCCCCCACATACACACGACCCTCCGCCTTCTCTGCACCTCAGCTAG
TACTCGAGATCATTGCGGTGCGCTTGTGGAAACCGGCGCCGATGCCGCGG
CACCTGCTGCAGACGATGTCAAGGCTGGGGCACGGTGATCGCCGGTGCAC
GTGGTACTACGCCAGCTACGGCCGTTCAAGCGGCACCCATGATGGACCGG
CGTTATCACCAGGAGCGGGCGCGGGCGGAGGCGGGGGCGGTGGCGCAGGC
GGCGGTGGCAGCGGTGGCGGTACGGGCGGGGTCTCGGAGGAAGAGTTTGT
GTTCGTGGAGAGGAAGCCGGAGTGGGACAAGGTGTACGTGCAGCAGACGA
GAGGGGGCATCCGAGCCGGCTTCCAGTCCGTGAGTCCCCCTCCACTCTGT
AGTTGTGAAACAGTCCGGATGTTTCGGTGCGACTGGAGGGTTGGCCGGTG
CCCCTTACGGTCCGTGACGGCGGAAACCGCTTTCGAGGATGCAGGAGGCA
GCCGTCCGCAACCGCGTCGCGAAGAACTGTTCTCACCTTTCTTGGGCGTG
CCGAACCGGAATCGACCTGTGACGCCTGAACCACCCGGCTTTGGAGTGTT
TCTTTCGTGTGGGTGGTGTAGAAGTCGCTCGTGGTGGTCCGGCGCACGCT
TACTCATCGCAGTCTCAGCTCTTGTCGCCCCTCCGGCGCGCCTCTGTTCT
CGTATTACAGGACGCGAGCCGGCTGTACGTGGCGAACATGAACCACTTCG
GCCGGGCGGGCGGTTACGCCGCAATCCTGTCCAGGATCGATCCCAGCAGA
GCTGCGGGCCCGGTGTCCATCGAGGAATTGATGACGTACACCGGCTTCTT
GGCGGTGGCGCCAAAGTGCTTCGCGTCGTTCTCCAAGGACAACCTGTGAG
ACGTTGCCGCCTCTCCAAGAGGGATGCCTTGACCCTTCAATTGCGGTTTT
TCCGCCATCTGTTGCCAATATCCCGCTGTTGTCCAACCGGCGTAGCGACG
GTGGGTTGAGGTCTGGCCGAGTCGCGCGGGTGGTGATTGTCTACAGTAGG
ACCTCCTCTCGGTAGATCATCCCGTACTGCTGCTACGTTATTGAACGTGT
TGTGTTTGTCTGTCACGACAGGTACTTCGAGGACGTGAGGCGAGGCGTTA
TGGCGCGTCTTGGGCGGCTGTCAAATGACGAGCTCGCCGCCGACGAAGAG
GCGGTGATGGCGATCATGAGCTCCCTCGGAGTCGTAATGTCGGCCATAGA
CATGAAGTTCAATGTAGGTGTAGCAGCAGACTACGCTGTTTTTTTTATGT
ATTTTGGTTGTTGTTACTGACGTGCATGTACGCACGTGTGTATAAATTGT
TTCGATCGAGGCCGTCCGTGTCTCGTGTTGCGTTCGTCTCGTTCGTCTCG
GATAGAGTCGCGAAGTTCTTCCGTGTTGCCTAGCGTGATATGAAGAAGCA
TGTTCGTCCACTTCTTGGTTGTTCACTCAATCTCTGCGACTCTCCCGTAC
TTTCTCACGCCTTGCAGCGCGTGCGGCGTGTAGTTCTGTACGTCGGATCG
TTTCACTCCTATGCTCTTGCTCTAGCCTGAGCGCTTGACTCCAAACACCG
GCCGGGTGTATTGTACGGTTGGGTATGTGATGCGGTTAGCGCGGCTTTCC
CCCATCTCCGCCCTCTCACTCCCCGTGTACCACCCGCCACCCTCTCTAGC
TTTTTGTGAGTGGGCCCCCCTTGAGCTTTCGCGACACGAGTGACTGAAAT
CCGCCCCCTCTTTTTTGCTCGAGGCTTGCCTTTTTCGTCTCTCTTACCCC
TGAACTCCTGTGCTTTTAGTCAGCTTTCTTTGTCCCGCCGATGCTGACGC
ACCCACCGTCTTGTCGCCGTCCCTGTTCCTGATGGGGTCCTGTCCTGTAC
TGTCCTGTCCTGTCCTGTCCTGCCCTGTCCTCGTTTGGCGTGTGTGTGTT
TTTTCTGTTTTTGTTTTTCGTCGAGAGCAGCGGACGGAGAACTTGGAGCG
CTTCCACGTGATGTTCGCGATTCAATTGATCCGGTGCCCTTTCCTCAACC
CAAGAATCAGGGGCGTGACCGTTCTCAGCGACATCATCGAGGTCACCATC
AGGAACGCGACGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15323:1267..3734+

>mRNA_Ecto-sp13_S_contig15323.4005.1 ID=mRNA_Ecto-sp13_S_contig15323.4005.1|Name=mRNA_Ecto-sp13_S_contig15323.4005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15323:1267..3734+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGGCCCGGACGCCCGTTTGTGGGAGATAGACTTGCCGGCGTTCATCGA
GCGCTGCCTGTCGTCTTCGATTAACGATCTACAAGCCCTGCCGTTCATCA
ACGATCTGTTCAAGCTAGTACTCGAGATCATTGCGGTGCGCTTGTGGAAA
CCGGCGCCGATGCCGCGGCACCTGCTGCAGACGATGTCAAGGCTGGGGCA
CGGTGATCGCCGGTGCACGTGGTACTACGCCAGCTACGGCCGTTCAAGCG
GCACCCATGATGGACCGGCGTTATCACCAGGAGCGGGCGCGGGCGGAGGC
GGGGGCGGTGGCGCAGGCGGCGGTGGCAGCGGTGGCGGTACGGGCGGGGT
CTCGGAGGAAGAGTTTGTGTTCGTGGAGAGGAAGCCGGAGTGGGACAAGG
TGTACGTGCAGCAGACGAGAGGGGGCATCCGAGCCGGCTTCCAGTCCGAC
GCGAGCCGGCTGTACGTGGCGAACATGAACCACTTCGGCCGGGCGGGCGG
TTACGCCGCAATCCTGTCCAGGATCGATCCCAGCAGAGCTGCGGGCCCGG
TGTCCATCGAGGAATTGATGACGTACACCGGCTTCTTGGCGGTGGCGCCA
AAGTGCTTCGCGTCGTTCTCCAAGGACAACCTGTACTTCGAGGACGTGAG
GCGAGGCGTTATGGCGCGTCTTGGGCGGCTGTCAAATGACGAGCTCGCCG
CCGACGAAGAGGCGGTGATGGCGATCATGAGCTCCCTCGGAGTCGTAATG
TCGGCCATAGACATGAAGTTCAATCGGACGGAGAACTTGGAGCGCTTCCA
CGTGATGTTCGCGATTCAATTGATCCGGTGCCCTTTCCTCAACCCAAGAA
TCAGGGGCGTGACCGTTCTCAGCGACATCATCGAGGTCACCATCAGGAAC
GCGACGAGGTGA
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