mRNA_Ecto-sp13_S_contig15321.4003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15321.4003.1
Unique NamemRNA_Ecto-sp13_S_contig15321.4003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15321.4003.1 vs. uniprot
Match: D7FTP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP8_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 5.850e-80
Identity = 149/166 (89.76%), Postives = 152/166 (91.57%), Query Frame = 3 
Query:    3 ARRRLWANQRPLKVPPPAAAVATLVLPGAVVTARARTTAVADHRCRLAGGSNQLLWEALASPRAARGCRVERILSSRAAPGAAEVSGFDSAISGGDDPENSRRPKTEGEHVGPRSRARGEGGERLAVAAMPHELALLLREELDVSRRLGCDEAGHWEREGRGGAVD 500
            ARRRLW NQRPLKVPPP AAVATLVLPGAVVTAR RTTA+A+HRCRLAGGSNQLLW ALASPRAARGCRVE  LSSRAAPGAA VSGF+ AISGGDDPENSR PKTEGEHVGPRS ARG  GERLAVAAMPHELALLLREELDVSRRLGCDEAG WE EGRGGAVD
Sbjct: 1212 ARRRLWVNQRPLKVPPPPAAVATLVLPGAVVTARTRTTAMAEHRCRLAGGSNQLLWGALASPRAARGCRVEGTLSSRAAPGAAGVSGFNRAISGGDDPENSRGPKTEGEHVGPRSPARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGRGGAVD 1377
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BLAST of mRNA_Ecto-sp13_S_contig15321.4003.1 vs. uniprot
Match: A0A6H5KHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.870e-61
Identity = 129/180 (71.67%), Postives = 131/180 (72.78%), Query Frame = 3 
Query:    3 ARRRLWANQRPLKVPPPAAAVATLVLPGAVVTARARTTAVADHRCRLAGGSNQLLWEALASPRAARGCRVERILSSRAAPGAAEVSGFDSAISGGDDPENSRRPKTEGEHVGPRSRARGEGGERLAVAAMPHELALLLREELDVSRRLGCDEAGHWEREGRGGAVDRLYQRDTETPVVAW 542
            ARRRLWANQRPLKVP                               LAGGSNQLLW ALASPRAARGCRVER LSSRAAPGAAEVSGF+SAISGGDDPENSR PKTEGEHVGPRSRARG  GERLAVAAMPHELALLLREELDVSRRLGCDEAG WE EGRGG VD +     ET    W
Sbjct: 1408 ARRRLWANQRPLKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGSNQLLWGALASPRAARGCRVERTLSSRAAPGAAEVSGFNSAISGGDDPENSRGPKTEGEHVGPRSRARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGRGGRVDSVEDCTGETWKPQW 1587
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15321.4003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP8_ECTSI5.850e-8089.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHC8_9PHAE1.870e-6171.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15321contigEcto-sp13_S_contig15321:2366..4197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1191
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionFibronectin type III
Ec32 orthologEc-06_009330.1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.7884514-UTR-Ecto-sp13_S_contig15321:2365..25311681462815.7884514-UTR-Ecto-sp13_S_contig15321:2365..2531Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15321 2366..2531 -
1681462815.8275816-UTR-Ecto-sp13_S_contig15321:3530..37481681462815.8275816-UTR-Ecto-sp13_S_contig15321:3530..3748Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15321 3531..3748 -
1681462815.838252-UTR-Ecto-sp13_S_contig15321:4026..41971681462815.838252-UTR-Ecto-sp13_S_contig15321:4026..4197Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15321 4027..4197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.799686-CDS-Ecto-sp13_S_contig15321:2531..30541681462815.799686-CDS-Ecto-sp13_S_contig15321:2531..3054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15321 2532..3054 -
1681462815.8112078-CDS-Ecto-sp13_S_contig15321:3417..35301681462815.8112078-CDS-Ecto-sp13_S_contig15321:3417..3530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15321 3418..3530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15321.4003.1prot_Ecto-sp13_S_contig15321.4003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15321 2532..3530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15321.4003.1

>prot_Ecto-sp13_S_contig15321.4003.1 ID=prot_Ecto-sp13_S_contig15321.4003.1|Name=mRNA_Ecto-sp13_S_contig15321.4003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MPHELALLLREELDVSRRLGCDEAGHWEREGRGGAVDRLYQRDTETPVVA
WIAPPPLLDPQNQPSQIQQHRLPRRSQQWQQRTRRRFARRRQGTTAGTSR
GMTKATGGLPGDVSLAFVPRGRQQQQQQQQQQQEDSKNNRHSPRGSPRRA
TVGTSGGRGGERVRASRRRGQHSGGDRDCYKEPRAWKAAVIHRVGDSNGA
RRERGKSRSIE*
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mRNA from alignment at Ecto-sp13_S_contig15321:2366..4197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15321.4003.1 ID=mRNA_Ecto-sp13_S_contig15321.4003.1|Name=mRNA_Ecto-sp13_S_contig15321.4003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15321:2366..4197- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCACGCCGGCGGCTGTGGGCGAACCAGAGGCCGCTGAAGGTGCCCCCG
CCGGCGGCGGCGGTAGCGACACTAGTTCTGCCGGGCGCGGTCGTGACGGC
GAGGGCGAGGACTACGGCCGTGGCGGACCATCGGTGCCGTCTTGCCGGGG
GCAGCAATCAGCTATTATGGGGTGAGACTCAACCTAATACCGTTTCTGTG
CCATGAGATAACTTTGAACGTTACTATCCGCCTTGGCTGAGGGATTCGAG
TTCTTGGACCCGACAACCACGGGGTATAATAATTATTCTTTGTGGTGGGA
CGATCACGAGCGATGTAGATTGCGTCTGTTGGTGTTTGCCTTGTTTCGTG
CACCCGCGCCTGTTCCTCCTTCGTTGCTTCCACCGAGACTTGTTTCTCTT
GAAACGCTGGATCAGCTTAACCCCTCATCCACCACACCTTTTAACCCAGA
AGCGCTGGCGTCTCCTCGAGCGGCCCGCGGGTGTCGCGTGGAACGGATTC
TATCCTCTAGAGCTGCACCAGGGGCGGCTGAAGTAAGCGGCTTCGATAGC
GCTATCTCAGGGGGCGACGACCCTGAAAATAGCCGACGGCCGAAGACAGA
GGGCGAACACGTGGGTCCCAGAAGCCGAGCGAGAGGGGAGGGAGGCGAGA
GGTTGGCGGTAGCAGCGATGCCCCACGAGCTGGCGTTATTGTTACGTGAG
GAACTCGACGTGTCGCGCCGTCTGGGATGCGACGAGGCTGGACATTGGGA
GAGAGAGGGCCGTGGCGGAGCGGTCGACAGGTGAAGGAAAGCTTTCAAAA
TCGTTAGTTAAGAGCGAGCCCTCACATTAAAATGGTGTTGAGATAATTGG
CTTGTTCTCCATCCAGCGGCATTCTGACAACATATCGATGGAGATCACGT
AGAGCTCCTAAATGATACAGTGCGTGTGCCGAATGACATTGTCAGGCGTG
GACGTGCCCAGACCTTTCGAAAGCGACTTAAGACACTGTACTTTGGTTCT
TTTACGAACAGCGTCGTAGGTGGCTATTCTTCATTCAGCATCTAGCCGTT
GCAATCGTGTGAATCGCGCGATACACCTTTCTTTTTCGTGACTCGTCCCC
AACTGACCCACCCTCGCCACCCCGCCGACCTTTCTTGTTTCAGACTGTAC
CAGCGAGACACGGAGACCCCAGTGGTGGCATGGATCGCCCCGCCTCCGCT
TCTTGACCCGCAAAACCAGCCCAGTCAAATTCAGCAACATCGGCTCCCTC
GTCGTAGCCAGCAATGGCAGCAACGTACCAGGCGGCGATTTGCCAGAAGG
CGGCAAGGCACGACGGCAGGGACAAGCCGAGGGATGACCAAAGCTACGGG
CGGGCTTCCAGGAGATGTATCGTTGGCCTTCGTGCCGCGGGGCCGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGACAGCAAAAATAATCGC
CATAGCCCCCGTGGTAGTCCCCGGCGAGCAACGGTCGGCACCAGCGGCGG
TCGTGGCGGTGAACGCGTTAGGGCAAGCCGGAGAAGGGGGCAACATTCTG
GTGGTGACCGTGACTGCTACAAAGAACCCAGGGCATGGAAAGCGGCGGTC
ATCCACAGGGTCGGTGATAGCAACGGAGCGCGTAGAGAAAGAGGGAAAAG
CAGATCGATAGAATAGTGACGGGAGCGATCGAGACGTGGCCAGCTTTGGT
AAGGGTTCGGACTTCAGGTATGGCACCGTCGGAAGGGGCAGGGGGTGTCC
CCTGAGTATCATGATCATAGCTCTGGAGTGCCCTTCCGTTGGATGGGTCA
AGGGTTGCCCAAGTTCGTGGACCACCCGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15321:2366..4197-

>mRNA_Ecto-sp13_S_contig15321.4003.1 ID=mRNA_Ecto-sp13_S_contig15321.4003.1|Name=mRNA_Ecto-sp13_S_contig15321.4003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15321:2366..4197- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCACGAGCTGGCGTTATTGTTACGTGAGGAACTCGACGTGTCGCG
CCGTCTGGGATGCGACGAGGCTGGACATTGGGAGAGAGAGGGCCGTGGCG
GAGCGGTCGACAGACTGTACCAGCGAGACACGGAGACCCCAGTGGTGGCA
TGGATCGCCCCGCCTCCGCTTCTTGACCCGCAAAACCAGCCCAGTCAAAT
TCAGCAACATCGGCTCCCTCGTCGTAGCCAGCAATGGCAGCAACGTACCA
GGCGGCGATTTGCCAGAAGGCGGCAAGGCACGACGGCAGGGACAAGCCGA
GGGATGACCAAAGCTACGGGCGGGCTTCCAGGAGATGTATCGTTGGCCTT
CGTGCCGCGGGGCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGGACAGCAAAAATAATCGCCATAGCCCCCGTGGTAGTCCCCGGCGAGCA
ACGGTCGGCACCAGCGGCGGTCGTGGCGGTGAACGCGTTAGGGCAAGCCG
GAGAAGGGGGCAACATTCTGGTGGTGACCGTGACTGCTACAAAGAACCCA
GGGCATGGAAAGCGGCGGTCATCCACAGGGTCGGTGATAGCAACGGAGCG
CGTAGAGAAAGAGGGAAAAGCAGATCGATAGAATAG
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