prot_Ecto-sp13_S_contig15306.3989.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15306.3989.1
Unique Nameprot_Ecto-sp13_S_contig15306.3989.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length112
Homology
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 3.180e-68
Identity = 103/110 (93.64%), Postives = 105/110 (95.45%), Query Frame = 0
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFRKDSSCCIDSI 110
            MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSV R+  SC + SI
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVCRR--SCLVASI 108          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.620e-64
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMS 97
            MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV+MS
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMS 97          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.770e-52
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 0
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
            M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 2.140e-31
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
            +FAEDMS+E  + A++ +++AF LTI  G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.270e-30
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFRKDSSCCIDSIP 111
            M+   Q +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR        +   C  D +P
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWRCE-----GEPPECDRDGMP 106          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.780e-30
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
            +FAEDM+D M +  + T+++AFQL +  G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 110 bits (276), Expect = 1.700e-29
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
            +FAEDM+D M    L T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.750e-28
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR-WVVMSVFRKDSS 104
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+ ++ + V    SS
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWKTYLQLPVGASGSS 111          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 3.540e-28
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 89
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.710e-28
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 0
Query:    8 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
            +FAEDMS+E  + A + +++AF +TI+ G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15306.3989.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI3.180e-6893.64Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE2.620e-6497.94Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA5.770e-5282.61Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH2.140e-3162.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4E7C9_9STRA2.270e-3050.45Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A485KYL8_9STRA5.780e-3058.82Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL1.700e-2960.00Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A225VFG7_9STRA2.750e-2856.12Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]
H3HCG0_PHYRM3.540e-2862.20Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A7S3H299_9STRA4.710e-2858.82Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..93
e-value: 1.3E-27
score: 107.8
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 8..92
e-value: 2.4E-24
score: 85.4
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 7..92
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10coord: 1..93
e-value: 8.8E-24
score: 85.3
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 4..92
NoneNo IPR availablePANTHERPTHR11886:SF64coord: 7..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..75
NoneNo IPR availableTMHMMTMhelixcoord: 76..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15306contigEcto-sp13_S_contig15306:352..1245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15306.3989.1mRNA_Ecto-sp13_S_contig15306.3989.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15306 180..1328 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15306.3989.1 ID=prot_Ecto-sp13_S_contig15306.3989.1|Name=mRNA_Ecto-sp13_S_contig15306.3989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAF
EKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVFR
KDSSCCIDSIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
IPR037177DLC_sf