mRNA_Ecto-sp13_S_contig153.3984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig153.3984.1
Unique NamemRNA_Ecto-sp13_S_contig153.3984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Match: D7FYV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV1_ECTSI)

HSP 1 Score: 732 bits (1890), Expect = 4.640e-261
Identity = 385/431 (89.33%), Postives = 395/431 (91.65%), Query Frame = 2 
Query:   83 MAAEPEQTTLTTKDATRAISARDAPSLAVFFRNLFDPTASRAGPQHVCLKRAFALLESRWSLDAEEGAYQLPMTGHHEPHVPFGESFLSPEVFVSVVAFLDVP*TMQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRSLKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRREVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHTSLDDSSLAVLAGVGDSLLRCTFSGGSADIEEGMAVLGAAAPRLETLAVHHVRVTNIGWEKFGKARLTSKRHLVFVHITPASDAHVPSKATRAVLLRAVTKSLVFSMGGRTSSGGSSNSSS--DASASQPVLIDCEGSKVGAAEAPGKLQFDSASNFWGSWKATDL 1369
            MAAE E+TT+T KDATRAISARDAPSLAVFFRNLFDP ASRAGPQHVCLKRAFALLESRWSLDAEEG YQLP TGHHEP VPFGESFLSPEVFVSVVAFLDVP TMQSARTSKAWWRN     AAAHVDLT  RPRSPIY TSLWGGPS+ARPR LKWND+LIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRR+VDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHT LDDSSLAVLAG GDSLLRCTFSGGSA IEEGMAVLGAAAPRLETLAVHHVRVTN GWEKFGKARL SKRHL+ VHITPAS AHVPSKATRAVLLRAVTKSLVFS+GGR+S           DA ASQPVLIDC+GSKVG AEAPGKLQFDSASN+WGSWKATDL
Sbjct:    1 MAAELEETTMTAKDATRAISARDAPSLAVFFRNLFDPAASRAGPQHVCLKRAFALLESRWSLDAEEGTYQLPTTGHHEPAVPFGESFLSPEVFVSVVAFLDVPQTMQSARTSKAWWRN-----AAAHVDLTNLRPRSPIYGTSLWGGPSVARPRGLKWNDILIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSRRDVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLRHTGLDDSSLAVLAGAGDSLLRCTFSGGSAIIEEGMAVLGAAAPRLETLAVHHVRVTNSGWEKFGKARLASKRHLISVHITPASAAHVPSKATRAVLLRAVTKSLVFSLGGRSSXXXXXXXXXXXDAPASQPVLIDCKGSKVGVAEAPGKLQFDSASNYWGSWKATDL 426
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BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Match: A0A6H5KKS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS8_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 9.220e-78
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 2 
Query:    8 MVGVEELARKKRGPRSLPKSSENHVMAAEPEQTTLTTKDATRAISARDAPSLAVFFRNLFDPTASRAGPQHVCLKRAFALLESRWSLDAEEGAYQLPMTGHHEPHVPFGESFLSPEVFVSVVAFLDVP*TMQSARTSKAWWRNVSALPAAAH 463
            MVGVEELARKKRG RSLPKSSENHVMAAEPE+TTLT  DATR ISARDAPSLAVFFRNLF P ASRAGPQHVCLKRAFALLESRWSLDAEEGAYQLP TG H+PHVPFGESFLSPEVFVSVVAFL++P T+QSARTSKAWWRN  A+P   H
Sbjct:    1 MVGVEELARKKRGSRSLPKSSENHVMAAEPEETTLT--DATRVISARDAPSLAVFFRNLFGPAASRAGPQHVCLKRAFALLESRWSLDAEEGAYQLPTTGFHKPHVPFGESFLSPEVFVSVVAFLEMPQTVQSARTSKAWWRN-GAVPILLH 149
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BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Match: D8LTA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.190e-22
Identity = 74/211 (35.07%), Postives = 107/211 (50.71%), Query Frame = 2 
Query:  158 SLAVFFRNLFDPTASRAGPQHVCLKRAFALLESRWSLDAE---EGAYQLPMTGHHEPHVPFGESFLSPEVFVSVVAFLDVP*TMQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRSLKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGL-LTHIDFSRS--RREVDFDQLGVQLPGLRGLA 772
            S+  F   LF  +A R G +  C++R  +LL+SRW  D +   +  +     G  +  V  G  +L  + F  VV +LD    ++S  +SK+WWR +S LP A+H+D T    R P                   W +++  L+ IK +NP RAV R+T    TKLGS  NL     G+ LTH+D +RS   +++DF  L   LP LRGLA
Sbjct:    2 SVCAFLGQLFPRSARRNGGELRCMRRGLSLLDSRWKADVDRKRKATFASEDKGMVDA-VLMGGFYLPSDSFAMVVEYLDHGTAVRSTPSSKSWWRTISGLPPASHID-TNIGKRLP-------------------WGELVTQLKTIKASNPLRAVARVTLGCRTKLGSFHNLGKVVGGVGLTHLDLTRSWGAKKLDFAALAKALPTLRGLA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig153.3984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYV1_ECTSI4.640e-26189.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKS8_9PHAE9.220e-7886.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTA9_ECTSI2.190e-2235.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig153contigEcto-sp13_S_contig153:27632..31285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1972
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002590.1
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig153.3984.1prot_Ecto-sp13_S_contig153.3984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig153 29149..30685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462814.320876-UTR-Ecto-sp13_S_contig153:27631..277531681462814.320876-UTR-Ecto-sp13_S_contig153:27631..27753Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig153 27632..27753 +
1681462814.3306823-UTR-Ecto-sp13_S_contig153:28873..291481681462814.3306823-UTR-Ecto-sp13_S_contig153:28873..29148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig153 28874..29148 +
1681462814.3653018-UTR-Ecto-sp13_S_contig153:30685..312851681462814.3653018-UTR-Ecto-sp13_S_contig153:30685..31285Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig153 30686..31285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462814.3417017-CDS-Ecto-sp13_S_contig153:29148..291881681462814.3417017-CDS-Ecto-sp13_S_contig153:29148..29188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig153 29149..29188 +
1681462814.3496413-CDS-Ecto-sp13_S_contig153:29485..298201681462814.3496413-CDS-Ecto-sp13_S_contig153:29485..29820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig153 29486..29820 +
1681462814.3575373-CDS-Ecto-sp13_S_contig153:30085..306851681462814.3575373-CDS-Ecto-sp13_S_contig153:30085..30685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig153 30086..30685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig153.3984.1

>prot_Ecto-sp13_S_contig153.3984.1 ID=prot_Ecto-sp13_S_contig153.3984.1|Name=mRNA_Ecto-sp13_S_contig153.3984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MQSARTSKAWWRNVSALPAAAHVDLTTFRPRSPIYRTSLWGGPSIARPRS
LKWNDVLIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHI
DFSRSRREVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLIST
VSLESLRLRHTSLDDSSLAVLAGVGDSLLRCTFSGGSADIEEGMAVLGAA
APRLETLAVHHVRVTNIGWEKFGKARLTSKRHLVFVHITPASDAHVPSKA
TRAVLLRAVTKSLVFSMGGRTSSGGSSNSSSDASASQPVLIDCEGSKVGA
AEAPGKLQFDSASNFWGSWKATDL*
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mRNA from alignment at Ecto-sp13_S_contig153:27632..31285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig153.3984.1 ID=mRNA_Ecto-sp13_S_contig153.3984.1|Name=mRNA_Ecto-sp13_S_contig153.3984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig153:27632..31285+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACCTATGGTGGGTGTCGAAGAACTGGCGAGGAAGAAAAGAGGGCCAA
GATCACTACCAAAATCCTCCGAGAACCACGTCATGGCTGCCGAGCCCGAG
CAAACTACCTTGACAACGAAAGGTGCGCGCTGGCTCGTTTGCACTTATCT
TTGAAATTTGAGTTCAGGATTAAAGGGAGTCCGCGCGTTCCTACTCCTGT
ACGCTGCAGTAGACTGCAACAATCTTTGTCGCCAATGACACGCAGAAAGC
ACTCTGCCCTTGGCCCTACAGTACCTGCACAACAAATATAACTTTGAAAT
GCGATCGGTGGTGGTGCGATTGTGCGGAATGCGAAATTATGAGGCGAATC
TGTCTGCCAAGCTACACTGACAGCTGTTTTGCAGTATTACTGATACTGAT
AACTGTTGCACAGACTACAATGCACATGTGTACAGATAGACACCCACCAT
AGCCTAGACCACAGCGTTCTCGTACTTGTAGTGTACATATTCCACACATC
TCCACTTCAACATACAGATTCACTTGCCGAGAACATTCACACAGGGTATG
GAGGCAGTCCCGAGGGTTCGAAGCTCCGTGCTTGGTAAAGCGTCTAGATT
TTTTCTTTTTCTTTTTCCAGCACTCGAACTTCAGCGCGATATTATGCGGT
GAATCGGAAGTATCTTTTCAAAGGGTGGGTCGCTTCATGTTATGGTTTAG
CGTAGCTGTTGAAACGAGGCTAAGTTCGACGCGTACGACTCACTGCAAGC
TTGAAAACCTATCCTGCTCTCAATCATGCCTCCTTCGTTCTAGTTGTTGG
GCGGGCGAGCGCCACGCTCAATCAAGTCGGTGGTCATCGGTAGGCACAAA
GTACCCTTTCGCGAGTGCTGTGTGTGTGAAGTTGTTTGAATCCGGCCTTT
AAATTTCGCTTGCTCAGCTGCGCAGGATCCTTTGTTTTGAAACCACAGTC
ACTTGTCGGACGAAGCCTTACGTTCAAGAGCTAGCTGCGGAAAGCCTGAG
TGACTCAAATCAGCGAGTACTCGAATATAATAAAAGCTGTAAAACCATCT
GCGATGCGGCTGCGGCAATGAGGCGAAGCTGATTTTTTCGTGCTTATATT
TAGTGCGGTGGGCACACCAAAGCAATCAGGTGTTTCATGAAAAACACAGT
GGAGCCCCGAACTATTTGGACTGCCTCCTTGCCGGTCACTGAGCGCCGTT
GGTCGTGTGTTCTGTGTTTGCAAATGTCCGATGCAATTTCAGATGCAACC
AGGGCGATCTCGGCGAGGGATGCTCCTTCGCTGGCTGTCTTCTTTCGGAA
CCTCTTCGACCCAACGGCCTCGCGCGCAGGTCCCCAACACGTTTGTCTCA
AGCGGGCTTTCGCTCTCCTCGAGAGCCGTTGGAGTCTGGATGCCGAGGAG
GGAGCCTACCAGTTGCCCATGACCGGTCACCACGAACCTCATGTCCCGTT
TGGCGAGTCCTTCCTCTCGCCCGAGGTGTTCGTCAGCGTTGTGGCGTTCT
TGGATGTGCCCTAGACGATGCAGAGCGCGCGAACGTCAAAGGCCTGGTGG
CGCAATGGTGGGGAGCTTGCACGGTTTCAACCGTTTGTGTTGGAGTACAG
TTGTGTGCATGCGGTGCTGCGGCGATTTGTTTGTGGCCCACTGCCGAGTA
AAGAAGGAGGGCACTTGTGTTTGATATCGGGTACTCGACTCAGCGCTAAT
TACCCGCTGCGTACATCATCCATATAACCTGACGTAATGTTTATGATTCA
TGCCAAGACGCGCAATCTTAGGGGAAGCCTTGACAATAGTTTTGCCTGAA
GATCGCGCGTCTGCCCCTCCTCCTCCTCTTCTTCCGAATTTCGCGATCAC
AAAGTTTCTGCCCTACCAGCTGCGGCCCACGTCGACTTGACCACCTTCCG
CCCTCGGTCGCCAATCTACCGCACATCGCTTTGGGGTGGGCCGTCCATTG
CACGCCCGAGGAGTCTCAAGTGGAATGACGTTCTCATCCATCTGAGGCAC
ATCAAGAACACGAATCCTCGCAGAGCGGTTCGACGCCTGACGTTCAACAG
TTCCACGAAACTCGGCAGCCTTTCCAACCTCTCCTCCGCCACGACAGGGC
TGCTCACCCACATCGACTTTTCGCGCTCGCGCCGCGAAGTCGACTTTGAT
CAGCTGGGGGTGCAACTGCCAGGGCTCCGAGGCCTAGCTGTGAGCGAGGA
CGTTTTGACACGCCTCGTTGGCGCTTGCGTTGAGACCGAGAGTAGTCCAT
GCTTACGCCACAAAGACAGCACAAGAAATATGGCGCGTTATTTTGTTGCG
AAGAAGTTGTACCTTTATTTATTGCTGTCGGGTGGACAGGATGACACTTT
TGTGACCCCCCGGAAGCCGAATCTTGGCGATCTCGGGACGTTCCTGAATT
TGCGGTCCTTCCCACCGTTCGGCGATTTTTCCTCTTTCACTTGTTTGTTT
TTAGGTGCAGTCCCTATCTTACTACACAGCTGCTAGAGACCAGGCGTGGA
CCAAGAGCTTAGCAAAGCTCATTTCTACAGTCTCGTTGGAGAGCCTGCGG
CTGCGCCACACGAGTTTAGATGACTCCTCTCTCGCTGTGCTTGCCGGAGT
GGGAGACTCTCTGTTGAGATGCACGTTCAGCGGGGGCTCCGCGGACATCG
AAGAAGGAATGGCGGTCCTTGGCGCCGCGGCTCCCCGGCTTGAAACACTC
GCGGTCCACCACGTCCGCGTGACCAACATAGGCTGGGAGAAGTTCGGCAA
GGCGCGACTGACGTCCAAGCGTCACCTCGTCTTCGTCCACATCACACCCG
CGAGCGACGCGCATGTCCCGTCGAAGGCGACGCGTGCGGTGCTGCTACGG
GCTGTGACGAAAAGCCTGGTCTTCTCCATGGGCGGCCGCACGTCGAGCGG
TGGCAGCAGCAACAGCAGTAGCGATGCTTCGGCGTCTCAGCCTGTTCTGA
TCGATTGCGAGGGCAGCAAAGTTGGTGCTGCTGAAGCCCCCGGAAAGCTA
CAGTTCGACTCAGCGTCGAATTTTTGGGGCTCGTGGAAGGCCACTGATCT
TTGATCGCTGCTTGCACAGACTCGAGAGAATGTGCGGCGGTTCGAGCGCT
GCTGAGGAAAAGGGACAATGTCAGGGAGTGTTGTGGACAGGACAATGACG
CTAGAGAGTTTCGTTGCGCTTGGAGGACTCTATGCTGTCGGGGAACAAAA
AGCCAGCCCCGAAGCGGCGGCGTTGTGCGTAGAGACAGAACCAACTGTGA
CGAGGTGGAGGGTTTACATGTTCATGTGCGGCCATGGTGGTTGCCGGTTT
GATGTGTCGCGTTTGCGTGTCTCGTGATGGTAGGTGCACGTGAGAGGTTG
TTGTGGTCGCTGGGAAAACTCGTCCGCGACACGGTTGTTGCCCTACGCGG
AACGTCGTCGTATGTTGGGACGGAAGCATATCTGTGTGTGGCGTTCATTA
TACTTCGTATGTATCAGGGCATCTTCCTTTCCGAGCAGTTATTTCCCTGC
GAAGGCCACACTCTTACTCTTTGCTTGCTTTATCCACGTGCGTATGTGCG
ATCTAGTGGACCAAAATGCTTGAAGTCTCTCCTCCAGGTTTGTGCAGTTC
TTTCGTACCAGACAGGCAGAAGAAGCATTGGCAACAAACAGTATTCCTTT
TGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig153:27632..31285+

>mRNA_Ecto-sp13_S_contig153.3984.1 ID=mRNA_Ecto-sp13_S_contig153.3984.1|Name=mRNA_Ecto-sp13_S_contig153.3984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig153:27632..31285+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCGCGCGAACGTCAAAGGCCTGGTGGCGCAATGTTTCTGCCCT
ACCAGCTGCGGCCCACGTCGACTTGACCACCTTCCGCCCTCGGTCGCCAA
TCTACCGCACATCGCTTTGGGGTGGGCCGTCCATTGCACGCCCGAGGAGT
CTCAAGTGGAATGACGTTCTCATCCATCTGAGGCACATCAAGAACACGAA
TCCTCGCAGAGCGGTTCGACGCCTGACGTTCAACAGTTCCACGAAACTCG
GCAGCCTTTCCAACCTCTCCTCCGCCACGACAGGGCTGCTCACCCACATC
GACTTTTCGCGCTCGCGCCGCGAAGTCGACTTTGATCAGCTGGGGGTGCA
ACTGCCAGGGCTCCGAGGCCTAGCTGTGCAGTCCCTATCTTACTACACAG
CTGCTAGAGACCAGGCGTGGACCAAGAGCTTAGCAAAGCTCATTTCTACA
GTCTCGTTGGAGAGCCTGCGGCTGCGCCACACGAGTTTAGATGACTCCTC
TCTCGCTGTGCTTGCCGGAGTGGGAGACTCTCTGTTGAGATGCACGTTCA
GCGGGGGCTCCGCGGACATCGAAGAAGGAATGGCGGTCCTTGGCGCCGCG
GCTCCCCGGCTTGAAACACTCGCGGTCCACCACGTCCGCGTGACCAACAT
AGGCTGGGAGAAGTTCGGCAAGGCGCGACTGACGTCCAAGCGTCACCTCG
TCTTCGTCCACATCACACCCGCGAGCGACGCGCATGTCCCGTCGAAGGCG
ACGCGTGCGGTGCTGCTACGGGCTGTGACGAAAAGCCTGGTCTTCTCCAT
GGGCGGCCGCACGTCGAGCGGTGGCAGCAGCAACAGCAGTAGCGATGCTT
CGGCGTCTCAGCCTGTTCTGATCGATTGCGAGGGCAGCAAAGTTGGTGCT
GCTGAAGCCCCCGGAAAGCTACAGTTCGACTCAGCGTCGAATTTTTGGGG
CTCGTGGAAGGCCACTGATCTTTGA
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