mRNA_Ecto-sp13_S_contig15294.3978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15294.3978.1
Unique NamemRNA_Ecto-sp13_S_contig15294.3978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15294.3978.1 vs. uniprot
Match: D7G281_ECTSI (Protein-serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G281_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.780e-90
Identity = 136/148 (91.89%), Postives = 143/148 (96.62%), Query Frame = 1 
Query:    1 MIERMAQTALGGSSSSGRAPQRLLRAVETYAARDPVRATLKGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGASTHYLDQLLRVHADTFQEVRDAGSVVERMLSHGTREDSLQRQRCDPLDDFRRTIDAVNNRHAPNV 444
            MIERMA +ALGGSSSS RAPQRLLRA+ETY AR PVRATL+GLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGASTHYLDQL RVHADTFQE+RDAGSVVERMLSHGTREDSL++QRCDPLDDFRRT+DAVNNRHAPNV
Sbjct:    1 MIERMAPSALGGSSSSRRAPQRLLRAIETYTARHPVRATLRGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGASTHYLDQLFRVHADTFQELRDAGSVVERMLSHGTREDSLRQQRCDPLDDFRRTVDAVNNRHAPNV 148
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BLAST of mRNA_Ecto-sp13_S_contig15294.3978.1 vs. uniprot
Match: A0A6H5L4H7_9PHAE (Protein-serine/threonine kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H7_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 5.550e-89
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:    1 MIERMAQTALGGSSSSGRAPQRLLRAVETYAARDPVRATLKGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGASTHYLDQLLRVHADTFQEVRDAGSVVERMLSHGTREDSLQRQRCDPLDDFRRTIDAVNNRHAPNV 444
            MIERMA++ALGGSSSS  APQRLLRAVETY ARDPVRATLKGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAG STHYLDQL RVHA TFQE+ DAGSVVERML HGTREDSLQRQRCDPLDDFRRT+DAVNNRHAPNV
Sbjct:    1 MIERMAKSALGGSSSSRSAPQRLLRAVETYTARDPVRATLKGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGTSTHYLDQLFRVHAATFQELLDAGSVVERMLPHGTREDSLQRQRCDPLDDFRRTVDAVNNRHAPNV 148
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BLAST of mRNA_Ecto-sp13_S_contig15294.3978.1 vs. uniprot
Match: A0A835YM41_9STRA (Protein-serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM41_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.520e-9
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:   67 LLRAVETYAARDPVRATLKGLVHHGRHARSKFVSHHLRDQLCVRLSHQMRRLELFP--RPAGASTHYLDQLLRVHADTFQEVRDAGSVVERMLSHGTREDSLQRQRCDPLDDFRRTIDAVNNRHAPNV 444
            L   +E YAA+     T+  LV      +S +V+H L+ +LC+RL+HQ++RL + P  RP       +DQLLRVH DTF+ +     V     S G              DDF R++ AV +RHA NV
Sbjct:    4 LTATLERYAAKRLTPVTMGHLVAAVTEPQSAYVNHSLKQELCIRLAHQLKRLRMLPHVRP-------IDQLLRVHKDTFETMLQ---VKGSQHSSG--------------DDFYRSLTAVQDRHATNV 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15294.3978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G281_ECTSI1.780e-9091.89Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A6H5L4H7_9PHAE5.550e-8991.89Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A835YM41_9STRA3.520e-936.72Protein-serine/threonine kinase n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15294contigEcto-sp13_S_contig15294:29..2792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score278.9
Seed ortholog evalue1.4e-72
Seed eggNOG ortholog2880.D7G281
Model size459
KEGG koko:K00898
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) kinase activity
EggNOG OGsCOG0642@1,KOG0787@2759
Ec32 ortholog descriptionpyruvate dehydrogenase kinase isoform 2; PDK2
Ec32 orthologEc-16_002130.1
EC2.7.11.2
Cds size459
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462813.238662-CDS-Ecto-sp13_S_contig15294:28..1871681462813.238662-CDS-Ecto-sp13_S_contig15294:28..187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15294 29..187 -
1681462813.2518337-CDS-Ecto-sp13_S_contig15294:1147..12611681462813.2518337-CDS-Ecto-sp13_S_contig15294:1147..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15294 1148..1261 -
1681462813.2688696-CDS-Ecto-sp13_S_contig15294:2606..27921681462813.2688696-CDS-Ecto-sp13_S_contig15294:2606..2792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15294 2607..2792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15294.3978.1prot_Ecto-sp13_S_contig15294.3978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15294 29..2792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15294.3978.1

>prot_Ecto-sp13_S_contig15294.3978.1 ID=prot_Ecto-sp13_S_contig15294.3978.1|Name=mRNA_Ecto-sp13_S_contig15294.3978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MIERMAQTALGGSSSSGRAPQRLLRAVETYAARDPVRATLKGLVHHGRHA
RSKFVSHHLRDQLCVRLSHQMRRLELFPRPAGASTHYLDQLLRVHADTFQ
EVRDAGSVVERMLSHGTREDSLQRQRCDPLDDFRRTIDAVNNRHAPNVVS
RP*
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mRNA from alignment at Ecto-sp13_S_contig15294:29..2792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15294.3978.1 ID=mRNA_Ecto-sp13_S_contig15294.3978.1|Name=mRNA_Ecto-sp13_S_contig15294.3978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15294:29..2792- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAAAGAATGGCCCAGACCGCTCTCGGTGGGAGTAGCAGCAGCGG
GAGAGCGCCGCAGCGCCTGTTGCGCGCCGTCGAGACCTACGCGGCACGGG
ACCCCGTTCGAGCAACGCTCAAGGGCCTCGTGCACCACGGCCGCCACGCC
AGGAGCAAGTTCGTGTCTCACCACCTCCGTGACCAGGTGGGAGGGAGGTT
GTAAGCGCCACCACAACCAAGTAGGTGGTGATGAGCATGTGATGCCCTCT
TTCAAGCGTACAAACACCACAGTGGTCCCGCTGTGTTTGTTGGAAACGAG
CGCGAGTACAACATGGCGGTGTATTTATATTCTGCCGCGACGAGGGTTGC
GAGATCGCGTTGCCTGTGCGTGCGTAACAGCAGTGGCCGTTTCTCCTCTA
CCTGTGTTCGCTGTTTGTCCTCCGTGTAACCTCGATGGGACCATGTTCGC
TGCCGGATTCGAACGCTGCATGTATGTAGACAGGTGATTTACATGATGCA
CAAAACTCTCCGTCCATCCTGGGGGCTGCTGTAGGAACTTTCGATACGCC
TGACTTTTTTCCTCCGCCAAAACTGGCTCCTTGTTCCACACCCCAAAGCC
TTGAGAGCTCTACCACACACTACAACTATACTCATGGTACAGCAACGGCA
TAAACAAAAACATGTACCACATGAGAGAGAAAGACGATGCAGTAACAATG
CTGCCCGGCGGTATGGAGTCTCCTCCCGGTACTTCATTAGCAGGACCAAC
GCTGTCGTCCAACTCCTCCCTCCTTCCCCGTCATGTCTTCGACGCCACAG
TAGCGCTTTGCGCTTTTATCCCACCCCCAATTTGCACAGTACAACTGACG
TGTTTCCATGGGTCAGCGGCTAGCGCGGTCGATGCTTATTCAAAATACAC
TCGAGACACTAACCTCTCGTTCAAGGGCGGCGAATCAAGGCGCTCGTTGG
ACGAGAAGGTTCAAGTTTTACTTCGTGCCATCGCTTTTTTGCCGCCCGAG
GACCTCCGCCATGCATTGAGACCTCCGTCATGTATTGATAGATGATGGGA
ACGTGGTCGATGTTGTTATTCCTAGACAAACACATGTGGGGCCGTGAGAG
TGCAGGGGGAGTTACTACATAGGCCCCAGAGAGATGTGGGTTTGGGTTTA
CTTCGTGAGGGCGGGGGAAAAGGGGGGATGAGGCAGCAGCAACAAGCGCA
GGGAACGCACCTGTGCAAGGAAATGCCGGTTGGGAAGGCTCTTTTGCGCC
GGGAGCAGGTGCTTCTGCTGCACCACCATGCGAAAGCTTTCGAGCGCAAA
GGCCGCAGTGGCGGACAAACTCGCTCTAGGTGGAGAGATGCATCACAGTT
GCTCCGACAAATCGCCGGTCTCTTCGTCGTGGAATTTCTTTGACGCCTGA
CTGCAGGCGAAAGGACGTTATATGAGCCGGTGCTGCCACCCGATCTTGCG
GTTGCGAACGCCCTTTGCCTGTACGCTGAATTTCTTCAGCGTTTCTCTTC
GCTTGTTCGCTGCTCGCCTTGGCTACGATAGCTGTGCGTGAGGCTGTCCC
ACCAGATGCGAAGGCTGGAGCTCTTCCCCCGACCTGCGGGCGCAAGCACC
CACTACCTCGACCAGCTGCTTCGGGTGCACGCCGATACGTTCCAGGTACA
AATGTGGTTCTGTAGGTATGTTCGAACGCTTGGCCTAGACCTGAACACGT
GTACATATGGCGAGCCCTGGACTGCTGCTTTCTGCGCCATCCAGCCTACC
CTAAGGTGCTCTCCGATTTGCCTTCGATATGGACTGCTTTTTGCTTCGGC
GGCTACTGTCTGCGCCATCCAGCCTACACCAATGAGCTCTGCGATTTTTC
TCGCGCGCGATAGACATGGTTTTGTTTGTCCCTTTGCCGTAAGACAAGCC
CCTCCGACAGCCGAGAACAGCAGTTGGATGTGCCCTCATCAACGGGACAC
GAGGGAGGGAATCGCACAAAAGCTAGCTCGCCGGGCGCAAGGTCTCGGAG
TTCTGCGTCGGAGGAGGCGCAAGCGTAGCGCATGGTCTTGATGGCGCGCG
CGTGCTAAATGTACATCCACACGTCCACGGCTGGTTACACCCGTTGCTTG
GTTGTCCCACACAGCATGATCCGACAACGAAGCACTGGCGACCACCGCCT
GGTGCTGTGACCCCAGTGATTTTCCGTAGCGGCACGATCAGAGTTGCACG
GCGTTGCGGGGGTATTGTGTCACGCGGGAAAGCGGCAGCAGCTGTTCGAG
TTAACGTGCCCTTTTGTGTCGTCGTAGCCCTCTGTTACAACGCTAGACCT
CCCTCACCGTTGAATAAACAGTGTTTCGTTGCACGATACTTTCAACTGTT
GTCTCTGGTGGAGCCAGTACACCCGTCGCCGCCGCCGTCGCTGCTGCTGC
TTCTGCTGCTGCTGGACGCAATGATTGGAGATTTTCTGGCTGAGAAAACA
TTATTTTCAGTTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTGTGC
GTCTCTCTCTCTGCCATTCGCTGTCTGTCTCGCCTCCCTCGGTCTCTCCT
TGTCTCTCACTCTCTCCCTCTCCCTCCCCCTCTTCCCGCTCGCATGCATA
TGCAGGAGGTGCGCGATGCGGGGAGCGTGGTGGAAAGAATGTTGTCCCAC
GGGACGAGGGAGGATTCTCTGCAGCGGCAGCGGTGCGACCCTCTCGATGA
CTTCCGCCGCACCATCGACGCCGTCAACAACAGACACGCCCCAAACGTCG
TGAGTCGACCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15294:29..2792-

>mRNA_Ecto-sp13_S_contig15294.3978.1 ID=mRNA_Ecto-sp13_S_contig15294.3978.1|Name=mRNA_Ecto-sp13_S_contig15294.3978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15294:29..2792- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAAAGAATGGCCCAGACCGCTCTCGGTGGGAGTAGCAGCAGCGG
GAGAGCGCCGCAGCGCCTGTTGCGCGCCGTCGAGACCTACGCGGCACGGG
ACCCCGTTCGAGCAACGCTCAAGGGCCTCGTGCACCACGGCCGCCACGCC
AGGAGCAAGTTCGTGTCTCACCACCTCCGTGACCAGCTGTGCGTGAGGCT
GTCCCACCAGATGCGAAGGCTGGAGCTCTTCCCCCGACCTGCGGGCGCAA
GCACCCACTACCTCGACCAGCTGCTTCGGGTGCACGCCGATACGTTCCAG
GAGGTGCGCGATGCGGGGAGCGTGGTGGAAAGAATGTTGTCCCACGGGAC
GAGGGAGGATTCTCTGCAGCGGCAGCGGTGCGACCCTCTCGATGACTTCC
GCCGCACCATCGACGCCGTCAACAACAGACACGCCCCAAACGTCGTGAGT
CGACCTTGA
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