mRNA_Ecto-sp13_S_contig15288.3974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15288.3974.1
Unique NamemRNA_Ecto-sp13_S_contig15288.3974.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: D8LC05_ECTSI (Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC05_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 6.960e-145
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 1
Query:    1 MVNHRTEEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGHHLP 642
            MVNHRTEEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLS EELSTYRARRPESRECYLEYG+TGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQE+AAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGHHLP
Sbjct:    1 MVNHRTEEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSAEELSTYRARRPESRECYLEYGNTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEMAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGHHLP 214          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A7S2D3H2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3H2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.450e-54
Identity = 100/208 (48.08%), Postives = 135/208 (64.90%), Query Frame = 1
Query:   22 EEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHT----PVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGH 633
            +E  IVID GS S K G+SGED PR++ PSV +   L+        +RRP+  +        G +D +V    HPV+RG++ D D+ME+L D+ F  EL  Y    +    PVL+ EPPLN++  R+++A +MFETFK PA+ +CNS+VL+LFASGRTRG+ LE G GV  AVP+FEGF+L HA LR   AGQD+T  L+G L  +GH
Sbjct:    2 DEGVIVIDAGSGSTKIGYSGEDTPRSIFPSVVDHPVLN-----EGTSRRPDVMD--------GAEDSSV----HPVKRGMVTDWDQMERLWDHTFGTELRTYPETGSVNGVPVLLTEPPLNDKKSREQMARLMFETFKAPAVCICNSAVLSLFASGRTRGVVLESGSGVTSAVPIFEGFSLPHATLRENLAGQDVTQHLQGTLAAQGH 192          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A7S2S4R5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4R5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.490e-52
Identity = 100/206 (48.54%), Postives = 139/206 (67.48%), Query Frame = 1
Query:   22 EEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYA----GAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEER 627
            EE   V+D GSSS K G+SGED PR++ P++ +D  L    L ++ +RRPE+R       D G  DE++    HP++R  + D D+ME++ D++F+ EL  Y     G+ TPVLM EPPL E   R+++A ++FETFK PA+++CNS  L+LFASGRTRG+ LE G G   AVP+FEGF+LNHA LRL+  GQD+T R+  +L ER
Sbjct:    5 EEGCFVVDAGSSSVKVGYSGEDSPRSIFPAIVDDPVL----LLSF-SRRPEAR-------DGG--DESLQ---HPIQRSRVTDWDKMERMFDHMFDTELHVYPDNGMGSGTPVLMTEPPLVEYKAREKMAQLLFETFKAPAIALCNSGTLSLFASGRTRGVVLECGSGTTSAVPIFEGFSLNHATLRLDVGGQDVTQRMHSMLTER 193          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A836CCR4_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 8.600e-50
Identity = 96/204 (47.06%), Postives = 134/204 (65.69%), Query Frame = 1
Query:   19 EEEATIVIDVGSSSAKAGFSGEDMPRAVCPSV-AEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEER 627
            +E  +IV+DVGS S K G+SG+D+P +V PSV      +S    +  RA+RPE RECY  Y     +D A      PV++G  +   ++E L+ N+F  EL + A A  PVL+ E P   R++R E A ++FE  K PALS+CN++ L+LFA+GRTRGL +E G G AHAVPVFEG+AL HA LR++ AG+D+T RL  LL+++
Sbjct:    3 DEGCSIVLDVGSGSTKIGYSGDDLPLSVLPSVIVSAAPVSDSRDTPSRAQRPECRECYRGYDSLHPEDHATR-DIWPVQKGQCQSTADLETLLHNVFRTELGSGAEAQRPVLLTESPSTTRARRAEAAELLFEGLKAPALSMCNTASLSLFAAGRTRGLVVECGAGAAHAVPVFEGYALAHAALRVDAAGRDVTLRLAQLLQQQ 205          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: F0Y9N8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9N8_AURAN)

HSP 1 Score: 162 bits (410), Expect = 9.970e-45
Identity = 102/214 (47.66%), Postives = 130/214 (60.75%), Query Frame = 1
Query:   34 IVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHL-SVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRD--IDEMEKLMDNLFNFELAAY-------AGAH--TPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGHHL 639
            IVID GS+S KAG+SGED PR+V PS+ ++    ++  L+    RRPES EC+ E            A  HP++ G++ +   ++ME+L D  F  EL  Y        GAH    VL+ E P    + R+  A +MFETFKVPAL   NS+ L+LFASGRTRG+ LE G GV+HAVPVFEGFAL HAVLR E AGQD+T+ L   L   G  L
Sbjct:    7 IVIDAGSASVKAGYSGEDTPRSVFPSILDEGGAEALSGLARSGGRRPESVECHFEN-----------AAQHPIQHGLVAEGNWEKMERLWDVTFGRELHQYPEGSSASGGAHGGLSVLLAEAPGTPAAARERAAQIMFETFKVPALCFFNSASLSLFASGRTRGVVLESGAGVSHAVPVFEGFALAHAVLRSELAGQDVTSALAANLRRTGSTL 209          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A2R5GEE4_9STRA (Actin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEE4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.660e-43
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 1
Query:   10 HRTEEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGH 633
            H  E  A IVID GS   KAGF+G+D P  V P++        + L T    RP   ECY+  GD       V +  +P+  G++ + D+MEK+  + F  EL A    H PVL+ EPPLN ++ R+ +  +MFE+F VPA+ VC  +VLAL+ASGRT G  L+ G GV H VP+F+G AL HAV R++ AG+D+T+ +  LL ERG+
Sbjct:    2 HEGEAHA-IVIDNGSGMCKAGFAGDDSPMVVFPAIVG----RPKNLGT--RLRPSEPECYV--GDDAFSKRGVLSLKYPIEHGIVTNWDDMEKIWQHTFYTELRAEPEEH-PVLLTEPPLNPKANRERMVQIMFESFNVPAMYVCIQAVLALYASGRTTGAVLDSGDGVTHTVPIFDGHALPHAVQRIDLAGRDLTDHMMKLLTERGY 199          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A267G454_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267G454_9PLAT)

HSP 1 Score: 154 bits (389), Expect = 9.840e-43
Identity = 88/207 (42.51%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   16 TEEEATIVIDVGSSSAKAGFSGEDMPRAVCPS-VAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGH 633
            +EE A +V+D GS   KAGF+G+D PRAV PS V    H SV             ++ Y+  GD  +    V A  +P+  GV+ + D+MEK+  + F  EL      H PVL+ E PLN ++ R+++  +MFETF  PA+ V   +VL+L+ASGRT G+ L+ G GV+H VP++EG+AL HA+ RL+ AG+D+T+ L  +L ERG+
Sbjct:    3 SEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHSSV-------MIGMGEKDSYI--GDEAQSRRGVLALKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIFRLDLAGRDLTDHLVRILTERGY 199          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A196SJ06_BLAHN (Actin n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJ06_BLAHN)

HSP 1 Score: 156 bits (395), Expect = 1.170e-42
Identity = 81/202 (40.10%), Postives = 129/202 (63.86%), Query Frame = 1
Query:   34 IVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGHHL 639
            ++ID GS   KAGFSG+D PRAV PS+     + +  + T      E+++C++  GD  +    V    +P+  G++ D D+MEK+  + F  EL      H PVL+ E PLN ++ R+ +  +MFETF +PA+ +   +VL+L+A+GRT G+ ++ G GV H VP+FEG++L HA+LR++ AG+D+T+ L+ +L ERG+ L
Sbjct:    6 LIIDNGSGMCKAGFSGDDAPRAVFPSIVGRPKVPMFMVGT------ENKDCFV--GDEAQSKRGVLTLKYPIEHGIVTDWDDMEKIWHHTFYNELRVSPEEH-PVLLTEAPLNPKANRERMTQIMFETFNIPAMYIQIQAVLSLYAAGRTTGMVVDSGDGVTHTVPIFEGYSLPHAILRMDLAGRDLTDYLQRILSERGYSL 198          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A3B4GY54_9CICH (Actin, beta 1 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A3B4GY54_9CICH)

HSP 1 Score: 152 bits (383), Expect = 1.610e-42
Identity = 84/206 (40.78%), Postives = 126/206 (61.17%), Query Frame = 1
Query:   19 EEEATIVIDVGSSSAKAGFSGEDMPRAVCPS-VAEDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGH 633
            +E A +V+D GS   KAGF+G+D PRAV PS V    H  V             ++ Y+  GD  +    +    +P+  G++ + D+MEK+  + F  EL      H PVL+ E PLN +S R+++  +MFETF  PA+ V   +VL+L+ASGRT G+ ++ G GV+H VP++EG+AL HA++RL+ AG+D+T+ L  +L ERGH
Sbjct:    3 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV-------MVGMGQKDSYV--GDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKSNREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYLMKILTERGH 198          
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Match: A0A0A0VCC6_SCYTH (Actin (Fragment) n=4 Tax=Scytodes thoracica TaxID=1112478 RepID=A0A0A0VCC6_SCYTH)

HSP 1 Score: 152 bits (384), Expect = 1.830e-42
Identity = 82/210 (39.05%), Postives = 129/210 (61.43%), Query Frame = 1
Query:   19 EEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVA-----EDLHLSVEELSTYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNSSVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITNRLKGLLEERGH 633
            +E A +V+D GS   KAGF+G+D PRAV PS+      + + + + +  TY              GD  +    + +  +P+  G++ + D+MEK+  + F  EL      H PVL+ E PLN ++ R+++  +MFETF  PA+ V   +VL+L+ASGRT G+ L+ G GV+H VP++EG+AL HA+LRL+ AG+D+T+ L+ +L ERG+
Sbjct:    4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDTY-------------VGDEAQSKRGILSLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLRKILTERGY 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15288.3974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC05_ECTSI6.960e-14598.60Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A7S2D3H2_9STRA5.450e-5448.08Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2S4R5_9STRA1.490e-5248.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CCR4_9STRA8.600e-5047.06Actin family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
F0Y9N8_AURAN9.970e-4547.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2R5GEE4_9STRA8.660e-4343.75Actin n=1 Tax=Hondaea fermentalgiana TaxID=2315210... [more]
A0A267G454_9PLAT9.840e-4342.51Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A196SJ06_BLAHN1.170e-4240.10Actin n=1 Tax=Blastocystis sp. subtype 1 (strain A... [more]
A0A3B4GY54_9CICH1.610e-4240.78Actin, beta 1 n=2 Tax=Euteleostomi TaxID=117571 Re... [more]
A0A0A0VCC6_SCYTH1.830e-4239.05Actin (Fragment) n=4 Tax=Scytodes thoracica TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15288contigEcto-sp13_S_contig15288:242..3690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score422.2
Seed ortholog evalue1.5e-115
Seed eggNOG ortholog2880.D8LC05
Model size642
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
Cds size642
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.976703-CDS-Ecto-sp13_S_contig15288:241..4601681462812.976703-CDS-Ecto-sp13_S_contig15288:241..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15288 242..460 -
1681462812.9866774-CDS-Ecto-sp13_S_contig15288:1330..14081681462812.9866774-CDS-Ecto-sp13_S_contig15288:1330..1408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15288 1331..1408 -
1681462812.9948404-CDS-Ecto-sp13_S_contig15288:2613..27841681462812.9948404-CDS-Ecto-sp13_S_contig15288:2613..2784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15288 2614..2784 -
1681462813.003335-CDS-Ecto-sp13_S_contig15288:3516..36901681462813.003335-CDS-Ecto-sp13_S_contig15288:3516..3690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15288 3517..3690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15288.3974.1prot_Ecto-sp13_S_contig15288.3974.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15288 242..3690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15288.3974.1

>prot_Ecto-sp13_S_contig15288.3974.1 ID=prot_Ecto-sp13_S_contig15288.3974.1|Name=mRNA_Ecto-sp13_S_contig15288.3974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MVNHRTEEEATIVIDVGSSSAKAGFSGEDMPRAVCPSVAEDLHLSVEELS
TYRARRPESRECYLEYGDTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDN
LFNFELAAYAGAHTPVLMVEPPLNERSQRQEIAAMMFETFKVPALSVCNS
SVLALFASGRTRGLALEVGGGVAHAVPVFEGFALNHAVLRLEGAGQDITN
RLKGLLEERGHHLP
back to top

mRNA from alignment at Ecto-sp13_S_contig15288:242..3690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15288.3974.1 ID=mRNA_Ecto-sp13_S_contig15288.3974.1|Name=mRNA_Ecto-sp13_S_contig15288.3974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15288:242..3690- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAACCATCGTACCGAAGAAGAGGCGACAATTGTGATCGATGTTGG AAGCTCGAGCGCGAAGGCGGGTTTCTCCGGAGAGGACATGCCGCGAGCTG TTTGCCCCTCGGTCGCAGAAGATCTACACCTCTCCGTGGAGGAGTTATCT ACCTATCGCGCAAGGCGTCCCGAGGTACACGTACCTAAGACAACGCCCTC ACCTGCTCCCCCTGTTGTAGCTTAGCAAACATCGCGACCTTCGATATTCT ACGAGATCCTTCTCCCTTCGTACCCGCCACTCCTCAGAATTCAGGAGACG TACTTGTACGATGCATGCCAAAGTACAGTACAGCAGTACATGCACGTACG TAAACGTCGTCGCTCATGTGCTGTAGATTACGCGAGTACATGCGTGCCAT GTAGTACGTACATGATCTACGGCGGCGGCGGGAACGCTCCATCCGAATGC CTCCTGCTGGTAGTCTGTCTGTGTGACCCTGGCTATTATAATGCGTCAAA ACATTCACCGGGTGTAGTCTGGCGCCCAGAATAAATAGGACGAAAATATA AAGATTCAAATGCAAGCGAACGGCCTGAAACAAACAACGAACAAGGAAGG GTAAAGATCTGTACATACGTATGGTAGGAGTCTGGTTTAGACTTGATGCT GACCTTGGTTTGCCTTCTTTCGGTTAGAAAGCGTTACCCCTAATAACAGG CGACAACAGTAGTCAGCGCTGACTGAATATTCTGATGGATTACAGTTGCC TAGCCTTCATCGATCAATTGTTTTGGGACGTGTCAACATAAGACCATAGG TCCAAATAGCATCCTCGTCCCCAACAACGTTGTTGTCACGATGAAGATAC ATGTAAACTTCTCTTGCTCAGTTTATTTTTCGTCATCAATCATCATCCAC CGGTAGAGCCGGGAGTGTTACCTGGAGTACGGAGACACGGGTAAGGACGA CGAAGCGGTCGCCGCCGGCGATCACCCCGTGCGGCGAGGCGTTCTGCGGG ACATCGACGAGATGGAGAAACTCATGGACAACCTCTTCAACTTCGAGCTA GCCGCATACGCTGGTGCTCACACTCCGGTAAGTAACCGGTGCAGAAGCGA TTGGCGCTCCAGGCCGTGCAAATACACATCATAGTAGGACATTTGGACTC GGACTGATTTACATAGATCAAAGTGCTTGGTGATGAACACGCCGTTGTAT GTGATGCACGCGGATGAAGGACAGCTGTTCGTTGAAACAACGCTCAACAG CTGCGACGAGCGACCAAAATCCTCCACGTGCTGCACGCGTTTCGCCGGAG TACGCACGTCTACAACGCCTCATGCCACGGTTGGCAGCTGCATTTTTGGA GTAATGGCCGTTTTACACACCGTGATTTTGCTTCCAAGTTTTCAAGCCCC GACGATTAGACTGTAGATGCTGTTGTAATATAGTAGTGTGGAACATCACC TTCTCCCGCCGCTGTACTGGGGCATAGGAAGTGGGATGAAAAGGCGGTAA GTGATATCGATAGGATACACTAGAGAACACATTTTTGAGCCACCTTTGGC GAAGTAGGAAGGAAAGATTGGCCATCGGCGATCGGTCCTGTGGGAACAAT GCTCCGTCCTCTTGAGGGCGCGTGGTCAATGTTCTCACCGCTAAGGCATG CAAAACATAAGAGTACATCCGCCCGGGGGGGGGGGGGGGGCACACGGTCA TGGAGGTCGAGGAGGATGGTAATATCCGTCAGAGGGGAAAGACAGGGGCG ATGTTGACGTATGATGGTGGTAAGTGTGGGTCGGGGAAAATCGCTGCGCG AGATGTGCTTTTCCTTTTAAAGAGTCATTCGGCACTTCGAAGTACTGTGA TATGGTAAATACTGGCGCTGAGATGGCCAGCACATTGACACAGTATTCCA CACAGAATGCTGGAGACCAGCTGACGGCAGCTTCCCAGAGATGACAAGAA ATCTAAGGTGCCACCACGGTCCACAGATCCACACGAGAGTGAGACACACG ATCCCGTCAGCAGAGACACTGGGAAAGTAGTTCCTCCGCATAGACAATCG TTACATCTTCACCGATACATACGCGATCTACGATATAAGAGCAGTGCTAC TGAAAACTGACTCATACATGGTCATCATGTGCTTTTCCATGACACCGGCT TTCTTTCAAGATTTCCGTTTATTTTCCCTCGGACGCAAATCGAGGTTCGA TGGGGTACGGATTGGGAGATTGGGAAATTTTGGGAAACGAATAGTTGCTG AATAAAACGGCCCTTATGCACCGTCTTCGCAGGTGCTGATGGTGGAGCCA CCTTTAAACGAGCGGTCGCAACGGCAGGAGATAGCTGCAATGATGTTCGA GACCTTCAAGGTACTGGTTTGCTCCTGGTACTCGGAAAGTGAAACAATGT TATCGCATTAGGGATGGACTGCACTGTACCGTGGCTGGAGTTGGTTTGAT GCATTCCCCCCCAAGTCGAAGTCGCCTTGTATGCTTCTATTATCGGCGTG TCGAGAATAGTTTGAGATGCCGCAGTCACGTGTGGAATAGTTCCTAACAA CAAACATACAGCGTGTGAAAGCACTTGCCTCACGGACAATTCGTACAGGG TTGTCGAACGGAGGGTAAGACGTATTTGCCTGCTATACCACCATATTTGC GAGCTCATAACAGCACTCGCCATTGTTGCTAGGACGACTATGCGTCCCTC TATATTTTTTCATTAATCCCAGTGGCTAATTGTGTTCTACGTCTAAGCAG AGGCAGCGTCTTTGCGACACATTTTCCGAGTTAGCAAACCAGACCATACG AGGTACGCAGATTGCCAATATTTTTTTGACACCTAAACGTAGGACACATT TTCCTCCACGGCGCCTCCCGATTTGAGACAGAGCGCCTTGTAAGCATGTC GATCACGGGTGGGTGCCGGTGCTCCTCTTCCACACCACCCTTCTCCGTCC TAGCTCCTTTGGCTCCCACGAAACCTAGATGAGAAGGCAAGGCGTAACCT GCGCCGAAGGGACAACCACCACCGTTAAAAACCGATCAGCAACAGAATAA ACCTTTCTAAACTCGATTCTTTTTGGGTTACCTATCCGAGAGGTGTCGTC CTTTCGTAGCGCGTGACCCGGTTGAAGGGGAGAAAGCCACCTACCACCGC TCAAATCAACCAGGAACTTAATTTTGCCAAAACTTACTTCTTTTCGGGTC CCTTGATTGACGTGCCGCTTTTTCGCATAGGTACCGGCTCTCAGTGTTTG CAACTCTTCCGTGCTGGCGCTTTTCGCCTCCGGCAGGACGCGTGGGCTGG CCCTCGAGGTCGGGGGCGGCGTCGCCCACGCGGTCCCCGTCTTCGAGGGC TTCGCGCTCAACCACGCCGTGCTGAGGCTGGAGGGGGCGGGTCAAGACAT CACCAATCGCTTGAAAGGCCTCCTTGAGGAGCGGGGACACCACCTGCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15288:242..3690-

>mRNA_Ecto-sp13_S_contig15288.3974.1 ID=mRNA_Ecto-sp13_S_contig15288.3974.1|Name=mRNA_Ecto-sp13_S_contig15288.3974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15288:242..3690- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAACCATCGTACCGAAGAAGAGGCGACAATTGTGATCGATGTTGG
AAGCTCGAGCGCGAAGGCGGGTTTCTCCGGAGAGGACATGCCGCGAGCTG
TTTGCCCCTCGGTCGCAGAAGATCTACACCTCTCCGTGGAGGAGTTATCT
ACCTATCGCGCAAGGCGTCCCGAGAGCCGGGAGTGTTACCTGGAGTACGG
AGACACGGGTAAGGACGACGAAGCGGTCGCCGCCGGCGATCACCCCGTGC
GGCGAGGCGTTCTGCGGGACATCGACGAGATGGAGAAACTCATGGACAAC
CTCTTCAACTTCGAGCTAGCCGCATACGCTGGTGCTCACACTCCGGTGCT
GATGGTGGAGCCACCTTTAAACGAGCGGTCGCAACGGCAGGAGATAGCTG
CAATGATGTTCGAGACCTTCAAGGTACCGGCTCTCAGTGTTTGCAACTCT
TCCGTGCTGGCGCTTTTCGCCTCCGGCAGGACGCGTGGGCTGGCCCTCGA
GGTCGGGGGCGGCGTCGCCCACGCGGTCCCCGTCTTCGAGGGCTTCGCGC
TCAACCACGCCGTGCTGAGGCTGGAGGGGGCGGGTCAAGACATCACCAAT
CGCTTGAAAGGCCTCCTTGAGGAGCGGGGACACCACCTGCCG
back to top