mRNA_Ecto-sp13_S_contig15280.3970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15280.3970.1
Unique NamemRNA_Ecto-sp13_S_contig15280.3970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15280.3970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15280contigEcto-sp13_S_contig15280:1678..3075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons3
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.768261-CDS-Ecto-sp13_S_contig15280:1679..17631681462812.768261-CDS-Ecto-sp13_S_contig15280:1679..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15280 1680..1763 -
1681462812.7791498-CDS-Ecto-sp13_S_contig15280:2441..26221681462812.7791498-CDS-Ecto-sp13_S_contig15280:2441..2622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15280 2442..2622 -
1681462812.7962847-CDS-Ecto-sp13_S_contig15280:3004..30751681462812.7962847-CDS-Ecto-sp13_S_contig15280:3004..3075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15280 3005..3075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15280.3970.1prot_Ecto-sp13_S_contig15280.3970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15280 1680..3075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15280.3970.1

>prot_Ecto-sp13_S_contig15280.3970.1 ID=prot_Ecto-sp13_S_contig15280.3970.1|Name=mRNA_Ecto-sp13_S_contig15280.3970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
QAGSHLVGNRPEKPGVETSRAGLGRADDGGVGTCPPATAPPPRKAHREPL
SSPASLCSPVPPFGRLMRGRPQSSLLPVEHNTPESVDCARVLAMEMEGKK
TGARKGNRRKSR
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mRNA from alignment at Ecto-sp13_S_contig15280:1678..3075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15280.3970.1 ID=mRNA_Ecto-sp13_S_contig15280.3970.1|Name=mRNA_Ecto-sp13_S_contig15280.3970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15280:1678..3075- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGGGTCACACCTGGTGGGAAATAGGCCGGAGAAGCCAGGGGTAGA
AACAAGCAGAGCCGGTTTGGGGTGAGTGAGTCTCTGCCCAAGAAACAAGC
TAGTCGTCGTCGTCGTGGTCGTCGTCGTCGTTGTTGTTGTTGCTACGGTT
GCTACAGGGTTGCTGTCGCTGATGTTCGTTTCCTGTTCTGAAAGGAGTTT
TTCTACCGTGCATGCCAAAAGAGAACATCTCATGCTGAAAAACGAAGCAG
ACACCAGTGCTAACTCTTTACGTCGTGCATTGCGTGTGTTGAAACTTGAA
CAAGAAGAACAAAGAGACGCATATCCGGCAAAATAAAGAGGCTTTCTTCT
TGCTGACAAAGCCAAGCAAAACCTCGCCTCGGGCACAACAACCCCAAACC
TACATACCCCTGCTCTTGTCTTCGCTTCCTTCAACTCGCCCTTGTCGTTG
CAGGAGAGCTGACGATGGGGGCGTAGGTACCTGTCCTCCCGCCACGGCGC
CGCCGCCCCGCAAAGCCCACCGAGAACCCTTGTCTTCGCCGGCATCGCTG
TGCTCGCCGGTCCCGCCGTTCGGGCGCCTGATGCGAGGAAGGCCGCAATC
TTCGCTGCTGCCGGTGGAACACAACACTCCCGAGGTGGAACCCCCCCAAA
GCCAAACATAAGAAGCAGAGGACACATATGGGGGGCTTTGATTGTTCCGG
GGCACGGCTGAAAAGGGTTGATAAAAGGGCACGACTTGCGAGGAATGACA
GATCACGTCAGTTTGGTACCCTTGTCCATGAAGGGAAGTAGCCACAGTGG
CTGACTCTGGACCATCCAAGCTCGCAATAACCACAGTAGTCCTGTAGCTT
GTTTGACCGCTAGCCAGCCGAGCTCGCATGACCCCAGTTTCGACGAGCAG
CATGCGTGGGAGCTTGGGACCGAGGGTTCGGTAGGGAAAAGTGTTGCAGT
GAGCTACCAGCCGATGTTTGACCAACCGACCGCGCATGACGGTGCTGTGT
CTGCGCTGTGCTGGCCTTTGTCAGTAGGGCCGATCAGCCAGATAACTGCC
TCTCGGGGCTCGCATGCACGGTAGCCCCCTCTCCCCCCGTCTCCCAGACT
GGGGTGGTATGCCTTCTTGGTCAGCAAAACTCCGACGCGCTCCGTACCAT
CTTCGCAGGGATGTAGGTCATGGCCTCTGCGCCTGAGGACAGCGGCCATG
CATTGATAACAAGTCCTTCCCGCCCCCCCTGCCCTTGTTGTCGCCGGGGA
ATGGCTGATCAACCACCGCGATTGTGAAACCGCAAAACTTACGCGTCCTT
CGGATGCGATAGAGCGTTGATTGCGCTCGGGTACTGGCCATGGAGATGGA
GGGGAAGAAAACGGGGGCGAGAAAAGGCAACAGGAGGAAAAGCCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15280:1678..3075-

>mRNA_Ecto-sp13_S_contig15280.3970.1 ID=mRNA_Ecto-sp13_S_contig15280.3970.1|Name=mRNA_Ecto-sp13_S_contig15280.3970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15280:1678..3075- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGGGTCACACCTGGTGGGAAATAGGCCGGAGAAGCCAGGGGTAGA
AACAAGCAGAGCCGGTTTGGGGAGAGCTGACGATGGGGGCGTAGGTACCT
GTCCTCCCGCCACGGCGCCGCCGCCCCGCAAAGCCCACCGAGAACCCTTG
TCTTCGCCGGCATCGCTGTGCTCGCCGGTCCCGCCGTTCGGGCGCCTGAT
GCGAGGAAGGCCGCAATCTTCGCTGCTGCCGGTGGAACACAACACTCCCG
AGAGCGTTGATTGCGCTCGGGTACTGGCCATGGAGATGGAGGGGAAGAAA
ACGGGGGCGAGAAAAGGCAACAGGAGGAAAAGCCGG
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