mRNA_Ecto-sp13_S_contig1528.3968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1528.3968.1
Unique NamemRNA_Ecto-sp13_S_contig1528.3968.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: D8LEE0_ECTSI (DUF2431 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE0_ECTSI)

HSP 1 Score: 773 bits (1995), Expect = 1.740e-273
Identity = 459/518 (88.61%), Postives = 465/518 (89.77%), Query Frame = 1
Query:  631 MGKFRGHQDKSRRGREKKLLKKKAGAAAGGIRAVAAQAESALPGGDSLTSSSPGRPQQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNVDESGTFPVIVRRGGAVSPAKPFATANNTGGSXXXXXXXXXXXXXXXXXNASDNSDLFGWGGCGSGDPDAGLGSWDDDQGKSERTTASEGAGGDAHGSGGVDQAAADANGRKNRGKKK-TGENGGGGGVPSGKEVGGVVEGKGVASNGASKRGMLQPPVQKKKAAKRRAQRXXXXXXXXXXXXXXXXXXEGAPRGEGFPQDDGVVPANKTKIPKRKRGKYVVNSAKKRPRD 2181
            MGKFRGHQDKSRRGREKKLLKKKAGAAAGGIRAVAAQAESA+PGGDSLTSSSPGR QQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVL+KYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEK RVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNVDESG FPVIVRRGGA S A    T       XXXXXXXXXXXXXXXXX   DNSDLFG GGCGSGDPD GLGSWDD++ K E+TTAS GAG  AHGSGGVDQA ADANGRKNRGKKK TGE GG GGVPSG E   V EGKG  SNGASKRGMLQPPVQKKKAAKRRAQRXXXXXXXXXXXXXXXXXX              V+PANK K PKRKRGKYVVNSAKKRPRD
Sbjct:    1 MGKFRGHQDKSRRGREKKLLKKKAGAAAGGIRAVAAQAESAVPGGDSLTSSSPGRLQQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLKKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKTRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNVDESGAFPVIVRRGGAASSANSVETXXXXXXXXXXXXXXXXXXXXXXXXXXXDNSDLFGGGGCGSGDPDGGLGSWDDEERKGEKTTASAGAGDVAHGSGGVDQATADANGRKNRGKKKKTGEKGGVGGVPSGSEAEEVNEGKGSVSNGASKRGMLQPPVQKKKAAKRRAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMPANKAKSPKRKRGKYVVNSAKKRPRD 518          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: D8LED8_ECTSI (DUF2431 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED8_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 8.360e-106
Identity = 193/291 (66.32%), Postives = 213/291 (73.20%), Query Frame = 1
Query:  631 MGKFRGHQDKSRRGREKKLLKKKAGAAAGGIRAVAAQAESALPGGDSLTSSSPG---RPQQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGAR-TNVFCRARSELDDN 1491
            MGKFRGHQD+S RGRE K+LKKK G A GGI A AAQAES + GGDSL S +PG   + QQR  VG KRKLKHVTYAKEHSVL+VGDG FSF    + HRGT AGVVATSLDS KAVL+KYP+AETWLPKLEADG Q   +              EGR       GV+GEK R+ F RVVFNFPHTGAQ THLNR+LI DFFASTKGLVKCAA GG VHVTLKDKPP+SGWN     + ++   V     DPSVFPGY +STTDPQA +F+A GAR TNV C ARSELDDN
Sbjct:    1 MGKFRGHQDRSWRGRENKILKKKVGVAVGGIHA-AAQAESTVSGGDSLGSGNPGHQQQQQQREAVGPKRKLKHVTYAKEHSVLLVGDGCFSFNC-CVEHRGTRAGVVATSLDSLKAVLKKYPQAETWLPKLEADGPQARENPSRGGWRP------EGRC------GVSGEKNRIWFHRVVFNFPHTGAQSTHLNRDLILDFFASTKGLVKCAAVGGHVHVTLKDKPPFSGWNGNVEGKRADHGGV---PGDPSVFPGYLYSTTDPQAMRFNAEGARRTNVLCPARSELDDN 274          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: A0A836CCP6_9STRA (DUF2431 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP6_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.490e-60
Identity = 111/204 (54.41%), Postives = 139/204 (68.14%), Query Frame = 1
Query:  802 QRGVVGAKRKL-KHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTT 1410
            Q  +  A RK+ K V+YA   ++L+ GDGDFSFTRG+++HR +GAGVVATSLDS   VL KYP A  WL +L AD A+V H VDATRLE+ +                   + + LFDRVVFNFPHTG QR HLNRNL+R+FF S +G VKCA  GGEVHVTLK+ PPY+GW +K  A  + ++ +R LAFDP+ FPGYRH  +
Sbjct:   64 QSALAPAVRKVPKTVSYAANSTILVCGDGDFSFTRGLLKHRRSGAGVVATSLDSHDVVLSKYPDALEWLDRL-AD-AKVLHGVDATRLEQAV-------------------RPQQLFDRVVFNFPHTGEQRVHLNRNLLRNFFRSARGYVKCAPDGGEVHVTLKEGPPYNGWEIKEAAAAAGMLPIRTLAFDPNQFPGYRHQVS 246          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: G4YGB3_PHYSP (DUF2431 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGB3_PHYSP)

HSP 1 Score: 178 bits (452), Expect = 3.240e-47
Identity = 96/220 (43.64%), Postives = 132/220 (60.00%), Query Frame = 1
Query:  847 YAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRL----EETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNV 1494
            YA E  VL++GDGDFSF+RG+++HRGTG GV+ATS DSE  V +KYP A+  +  + +    V H VDAT+L    ++   GAG     D              F  +VFNFPH+G QR H+NR L+ +FF S +  +    A GE HVTLK +PPYS W ++  A+++  ++     F+  +FPGYRH TTDPQAKKF+     T VF   RS++ + V
Sbjct:   40 YAAEDDVLVLGDGDFSFSRGLVKHRGTGRGVLATSFDSESQVRKKYPNAQECIAAVRSAHGLVLHDVDATKLLELPQQVKTGAGMKAVPD-------------FFKYIVFNFPHSGQQRVHINRALLLNFFGSARDRL---TAHGEAHVTLKTRPPYSNWFIEDQAKDAGFVLKERRKFNIRLFPGYRHRTTDPQAKKFEPDLCVTYVFVVNRSKVRNRV 243          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: F0W3R3_9STRA (Uncharacterized protein AlNc14C14G1639 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3R3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.320e-46
Identity = 93/205 (45.37%), Postives = 127/205 (61.95%), Query Frame = 1
Query:  847 YAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVF 1461
            Y K  S+LIVGDGDFSF++ ++     G  ++ATS D EKAV +KY  A++ +  ++  GA V H VDAT+L++TL               V G  K  LFD V+FNFPHTG QR HLNRNL+RDFF S + ++      GEVH+TLK++PPYS W ++  AR+S  ++     FD  ++PGY+H TTDP AK F+     T +F
Sbjct:   28 YTKGSSILIVGDGDFSFSKALLSICECGQRLIATSFDDEKAVFEKYANAKSCIQYIKTHGAYVLHRVDATQLDQTLW-------------RVNGLTK--LFDYVIFNFPHTGQQRVHLNRNLLRDFFQSARTILTPL---GEVHITLKNRPPYSNWQIEKFARDSHYLLKARQKFDSRLYPGYQHRTTDPLAKFFETELCTTYIF 214          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: A0A225WPB9_9STRA (DUF2431 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPB9_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.330e-46
Identity = 95/224 (42.41%), Postives = 132/224 (58.93%), Query Frame = 1
Query:  823 KRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRL----EETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSEL 1482
            K++     YA + +VL++GDGDFSF+RG+++HRGTG GV+ATS DSE  V  KYP A+  +  + +    V H VDAT+L    ++   GAG     D              F  +VFNFPH+G QR H+NR L+ +FF S +  +    A GE HVTLK +PPYS W ++  A+ +  +M     F+  +FPGYRH TTDPQAKKF+     T VF   R+++
Sbjct:   26 KQEASTQVYAADDTVLVLGDGDFSFSRGLVKHRGTGRGVLATSFDSESKVRSKYPNAQECIAAVRSAHGLVLHDVDATKLLELPQQVKTGAGLKPVPD-------------FFHYIVFNFPHSGQQRVHINRALLLNFFESARDRL---TAQGEAHVTLKTRPPYSNWFIEEQAKAAGFVMKERRKFNIRLFPGYRHRTTDPQAKKFEPDLCVTYVFVVNRAKV 233          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: A0A1V9ZN60_9STRA (DUF2431 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZN60_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.910e-46
Identity = 89/225 (39.56%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  847 YAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNVDESGTFPVI 1521
            Y  +  +L++GDGDF+F++G++ HRG+G  ++ATS DS  AV  KY  A T +  +    A V H +DAT+L++                 V  +    LFD ++FNFPH+G QR H+NR L+ DFF S +  +K     GEVH++LK+KPPYS WNV+  A+ S  ++     F   +FPGY H TTDP AKKF+A    T VF   RS      ++    P++
Sbjct:   33 YTAKDVILVLGDGDFTFSKGLVEHRGSGINLIATSFDSSTAVRDKYKNAYTCINAIRQAKAHVLHDIDATKLDQL----------------VHNDAVPALFDYIIFNFPHSGEQRVHINRVLLLDFFGSARSKLKFR---GEVHISLKNKPPYSNWNVEDQAKASGFVLKERRPFRSKLFPGYNHRTTDPDAKKFEADQCTTYVFIVDRSRYPVPTEQPPKTPLV 238          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: D0MYL5_PHYIT (DUF2431 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MYL5_PHYIT)

HSP 1 Score: 174 bits (442), Expect = 3.700e-46
Identity = 100/227 (44.05%), Postives = 133/227 (58.59%), Query Frame = 1
Query:  808 GVVGAKRKLKHVT-------YAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRV--LFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVF 1461
            G  GAKR+ +H T       YA + +VL++GDGDFSF+RG+++HR TG GV+ATS DSE  V +KYP A+  +  + +    V H VDAT+L E       G G            K +   F  +VFNFPH+G QR H+NR L+ +FF S +  +      GE HVTLK +PPYS W ++  A+ +  +M     FD  +FPGYRH TTDPQAKKF+A    T VF
Sbjct:   17 GNSGAKRQ-RHGTQETSTQLYAADDTVLVLGDGDFSFSRGLVKHRSTGQGVIATSFDSESQVRRKYPNAQECIAAVRSAHGLVLHDVDATKLFELPQKVKTGTG-----------LKTIPDFFQYIVFNFPHSGQQRVHINRALLLNFFESARDRL---TVRGEAHVTLKTRPPYSNWFIEDQAKIAGFVMKERRQFDIKLFPGYRHRTTDPQAKKFEAHLCVTYVF 228          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: M4BFN6_HYAAE (DUF2431 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFN6_HYAAE)

HSP 1 Score: 178 bits (451), Expect = 3.990e-46
Identity = 95/211 (45.02%), Postives = 128/211 (60.66%), Query Frame = 1
Query:  847 YAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSE 1479
            YA + +VLIVGDGDFSF+RG+++HRGTG G++ATS DS+  V  KY  A   +  +++    V H VDAT+L E       G G          +    +F  ++FNFPH+G QR H+NR L+ +FF S +  +   +  GEVHVTLK +PPYS W V+  A+E+  ++     FD  +FPGYRH TTDPQAKKFD     T VF   RS+
Sbjct:   39 YAPKDTVLIVGDGDFSFSRGLVKHRGTGLGIIATSFDSDSQVCAKYSNAHECIAAVQSSLGLVLHDVDATKLLELPQHVQTGTGS---------KTISDVFQYIIFNFPHSGQQRVHINRALLLNFFESARDRL---SVHGEVHVTLKTQPPYSNWFVEDRAKEAGFVLKERRKFDSRLFPGYRHRTTDPQAKKFDLDLCVTFVFVVNRSK 237          
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Match: A0A3R7WIN5_9STRA (DUF2431 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7WIN5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.090e-46
Identity = 102/238 (42.86%), Postives = 137/238 (57.56%), Query Frame = 1
Query:  772 LTSSSPGRPQQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTGAGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLGAGEGRGDDGGGGGVAGEKKRV--LFDRVVFNFPHTGAQRTHLNRNLIRDFFASTKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPSVFPGYRHSTTDPQAKKFDAGGARTNVFCRARSE 1479
            LT S  G   +R     ++K     YA + +VL++GDGDFSF+RG+I+HRGTG GV+ATS DSE  V +KYP A+  +  ++A    V H VDAT+L E       G G            K V   F  ++FNFPH+G QR H+NR L+ +FF S +  +      GE HVTLK +PPYS W ++  A+++  +M     FD  +FPGYRH TTDPQAK F+     T VF   RS+
Sbjct:   15 LTGSRLGSNTKRQRQDIQKKTLTQVYAPDDAVLVLGDGDFSFSRGLIKHRGTGRGVLATSFDSENEVRRKYPNAQECIAAVQAAHGLVLHDVDATKLLELPRHLKIGTG-----------MKTVPDFFQYIIFNFPHSGQQRVHINRALLLNFFESARDRL---LVHGEAHVTLKTRPPYSNWFIEDQAKKAGFVMKDRRKFDVRLFPGYRHRTTDPQAKTFEPNLCVTYVFVVHRSK 238          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1528.3968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE0_ECTSI1.740e-27388.61DUF2431 domain-containing protein n=2 Tax=Ectocarp... [more]
D8LED8_ECTSI8.360e-10666.32DUF2431 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CCP6_9STRA1.490e-6054.41DUF2431 domain-containing protein (Fragment) n=1 T... [more]
G4YGB3_PHYSP3.240e-4743.64DUF2431 domain-containing protein n=1 Tax=Phytopht... [more]
F0W3R3_9STRA2.320e-4645.37Uncharacterized protein AlNc14C14G1639 n=1 Tax=Alb... [more]
A0A225WPB9_9STRA2.330e-4642.41DUF2431 domain-containing protein n=1 Tax=Phytopht... [more]
A0A1V9ZN60_9STRA2.910e-4639.56DUF2431 domain-containing protein n=1 Tax=Thrausto... [more]
D0MYL5_PHYIT3.700e-4644.05DUF2431 domain-containing protein n=1 Tax=Phytopht... [more]
M4BFN6_HYAAE3.990e-4645.02DUF2431 domain-containing protein n=1 Tax=Hyaloper... [more]
A0A3R7WIN5_9STRA4.090e-4642.86DUF2431 domain-containing protein n=1 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1528contigEcto-sp13_S_contig1528:4970..9585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score777.7
Seed ortholog evalue3.4e-222
Seed eggNOG ortholog2880.D8LEE0
Model size2358
KEGG koko:K10696,ko:K19307
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.rRNA (uridine-N3-)-methyltransferase activity
EggNOG OGsKOG4174@1,KOG4174@2759
Ec32 ortholog descriptionDomain of unknown function DUF2431
Ec32 orthologEc-00_001930.1
EC2.1.1.313,2.3.2.27
Cds size1554
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1528.3968.1prot_Ecto-sp13_S_contig1528.3968.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1528 5600..9411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.4945736-UTR-Ecto-sp13_S_contig1528:4969..55991681462812.4945736-UTR-Ecto-sp13_S_contig1528:4969..5599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1528 4970..5599 +
1681462812.5889819-UTR-Ecto-sp13_S_contig1528:9411..95851681462812.5889819-UTR-Ecto-sp13_S_contig1528:9411..9585Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1528 9412..9585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.5081546-CDS-Ecto-sp13_S_contig1528:5599..58981681462812.5081546-CDS-Ecto-sp13_S_contig1528:5599..5898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 5600..5898 +
1681462812.5173845-CDS-Ecto-sp13_S_contig1528:6134..62371681462812.5173845-CDS-Ecto-sp13_S_contig1528:6134..6237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 6135..6237 +
1681462812.5267127-CDS-Ecto-sp13_S_contig1528:6598..68041681462812.5267127-CDS-Ecto-sp13_S_contig1528:6598..6804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 6599..6804 +
1681462812.535579-CDS-Ecto-sp13_S_contig1528:7449..75331681462812.535579-CDS-Ecto-sp13_S_contig1528:7449..7533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 7450..7533 +
1681462812.5449553-CDS-Ecto-sp13_S_contig1528:7787..78841681462812.5449553-CDS-Ecto-sp13_S_contig1528:7787..7884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 7788..7884 +
1681462812.5547626-CDS-Ecto-sp13_S_contig1528:8223..82951681462812.5547626-CDS-Ecto-sp13_S_contig1528:8223..8295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 8224..8295 +
1681462812.576598-CDS-Ecto-sp13_S_contig1528:8718..94111681462812.576598-CDS-Ecto-sp13_S_contig1528:8718..9411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1528 8719..9411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1528.3968.1

>prot_Ecto-sp13_S_contig1528.3968.1 ID=prot_Ecto-sp13_S_contig1528.3968.1|Name=mRNA_Ecto-sp13_S_contig1528.3968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=518bp
MGKFRGHQDKSRRGREKKLLKKKAGAAAGGIRAVAAQAESALPGGDSLTS
SSPGRPQQRGVVGAKRKLKHVTYAKEHSVLIVGDGDFSFTRGVIRHRGTG
AGVVATSLDSEKAVLQKYPRAETWLPKLEADGAQVAHSVDATRLEETLLG
AGEGRGDDGGGGGVAGEKKRVLFDRVVFNFPHTGAQRTHLNRNLIRDFFA
STKGLVKCAAAGGEVHVTLKDKPPYSGWNVKAMARESELIMVRCLAFDPS
VFPGYRHSTTDPQAKKFDAGGARTNVFCRARSELDDNVDESGTFPVIVRR
GGAVSPAKPFATANNTGGSNNSDDSVDGDDRSSEEDNASDNSDLFGWGGC
GSGDPDAGLGSWDDDQGKSERTTASEGAGGDAHGSGGVDQAAADANGRKN
RGKKKTGENGGGGGVPSGKEVGGVVEGKGVASNGASKRGMLQPPVQKKKA
AKRRAQRKRKAAAAKEAVAATAAAAEGAPRGEGFPQDDGVVPANKTKIPK
RKRGKYVVNSAKKRPRD*
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mRNA from alignment at Ecto-sp13_S_contig1528:4970..9585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1528.3968.1 ID=mRNA_Ecto-sp13_S_contig1528.3968.1|Name=mRNA_Ecto-sp13_S_contig1528.3968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1528:4970..9585+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGCGGTGTCCTTGCGTGTGTGATACCGAAGGGTGGAGAGAGAGAGA GAGAGAGAGAGCGCGCGTGTCGCTCACTGGTGAGTGCGTTATGTACCTTG TTCGAGCAAAGCGATGATCCACTTCGGTCGTCGTTTGATGACGGGTCGTA GCTGGCTCCGCGGGACTGTTAGCTTTTCGTGGCAGCAAGAGCAGTACGAG AGTAAGAACGCCCGGTTCTCATGTTTTCTCTATCTCGTCGCGCTAGGGTT TGTAGTTGCCGAAGGCTACCGGATTACACCACATTTAAAAAACCGTGGCT GTACTCATAGAACAGCACTGGGCAACAAGCGCCTGCTCCTCATCCCGATC ATGACCACACCAATGGAGGCAGCAGTGCACTCCTCGAGACTTGCAAGGGT CCAGTAGACCATCCTCACGCGGTGGCGAACAGGCGGCAACAACCGCAGCA CAATTAGCAAATCTGTTGATGGCAGCCCTTGATTATGTTTTTGACCCCCT TGACAAATAAAGCAGACCGGATTTCTCACAGTCGTTTTTCGTAGGCCTCA ACTTTGAAAAGCTGGAGGAGTACGTACCTTGCGCCCCCCGCAGGCAGCGA AGAGTAAACCGATCGGCCTTTGTGAGGCACATGGGGAAGTTCCGAGGGCA CCAGGATAAGAGCCGGAGGGGAAGGGAGAAGAAGCTCCTCAAGAAGAAAG CCGGGGCGGCTGCTGGGGGAATTCGCGCCGTGGCGGCGCAAGCTGAGTCG GCCCTTCCCGGCGGCGACTCTCTGACCAGCAGCAGTCCTGGCCGTCCACA ACAGCGGGGGGTAGTAGGCGCCAAGAGGAAGCTCAAGCACGTGACGTACG CCAAGGAACACTCGGTGCTCATCGTCGGAGACGGCGACTTCAGCTTCACG CGTGGCGTTATCCGGCACCGGGGAACGGGGTGAGTCAAACCGAGCGCTCG CCACTTCCGTACAGCACACATCTCTTGGAACACTTGCCGTACTAAATGTG CGGCGAAATAACAAAACCCAGACGTCAGCGTCAACAACCAAGGTCTCTTT CACCCACGAAGCGACCTGATCTGATGAAGCTAGGTTTGTGAATCCCCTCT TGTTTGACGGAATTCCAAGCTCGTTGTTCAAACTCCTTTGAAACCGTTTC CGTTCATTGGTGCAGAGCTGGTGTCGTGGCGACGTCCCTGGACTCCGAGA AAGCCGTACTCCAGAAGTACCCGCGAGCCGAGACGTGGCTCCCCAAACTT GAAGCAGACGGAGCCCAGGTAAACGAACCACCTGAGACGGGCTATGATTT CTGGTACGGGAAACGTCGAGGGCGTGCGGCCGGCCGAATGTCTGTAAATG CATCCTTGATTGTCTCTTGCGTCGACTCTGCTCCGGTGTACTGCTGCGGT GGTGGACGCGGCGCAGGCGGAAACTAGACCAGGGGAAGACTCCGCCAGGC CTGCCCAAACCACAAGTGACCGCACCATAGATGGTCGGGGGATACTTTCG TTTTGAATGACTGCCGACACTCACAGCCAACACTTTTTGACCGTCTGATA TGATCTTGTGCTAATCATCCAGCATCTTGACCGGGTCTCATCTGCCGTTA CCCTTGCGTTGTGTTTTTTGTTGTGCCAGGTTGCTCACTCTGTAGACGCG ACCAGGCTGGAGGAAACCCTCCTAGGGGCCGGTGAAGGCCGGGGAGATGA CGGGGGTGGAGGCGGAGTTGCTGGAGAGAAGAAGCGAGTTTTGTTCGATC GCGTCGTCTTCAACTTCCCCCACACCGGTGCCCAGAGGACACACCTTAAC CGTAACCTCATCCGAGACTTCTTCGCCAGCACCAAGTGAGTCGCGGCAGC GGCACCGAAAAGCATTCGCAATCAACCACCCAGTGTTGTTATCGATGTTA GCCTTAAGCAGTAGGTGTTAGCCTTGAGCAGTATATCGATGTAAGTCTTA GCAGTAAATCGATGTTACTCTTGGCAGTAAATCGATGTTGGTCTTGAGAT AATAGAGGCCGGCCTAGGCTGCTTGCGTCAGAAAGTGACCCGCCTGCTGT CGTTTGGCCACGGTGGGAAAAGAAAGCTCGGATTTGATGGGCCGTGATTT TCGGTTTCCCACGAGGTCGATCACACGGCTCACGCGGTATACCGCGGGGG ACGGGGTAGAAAGGATTCACCATCGATGTCTCACTCAGTTCGTAAGATTG CAGCGAGGGAGACGAGTAGGATTCCACGCTAGACCTATGCAGGTGGAGCC GAGCGAGGTTTCATGTGGGGGCGACGTGCTGTTTTGTTTTCTTCGTTTCG GCCGTGACATGTCTTGGTCTCCGAACATCTGTGCCGAACGAGCACGTGCG CAAAACGGCGACGACAGACCACGCTCTCGTTTCTTGGCGGGCAGTTCGTG TGCATGCCCTATCCTCTTCCGACGGAATCCCGTGAAACTCTGCCTGGGCC CCTCCCCTCTCTCCTTACGATCGTGAAAAGGGGATTGGTGAAGTGCGCGG CGGCCGGGGGAGAGGTGCATGTTACCCTCAAGGACAAGCCTCCGTACTCG GGCTGGAACGTGAAGTGAGCCGTCCGTTTGTTCTGTTGGTTTTTGTCGCG GCTTTGCTCTGTGCTTTCTTGGTACGGTTTTGACAATCGCGGTCATACTT CGTGTTGAATGTTGTCATTTTGCTTGTTGATGTGGTTTTTCTGTGGCTTT CTCGGTGCTTTGGACTCGCCCTTGTTCTTCGGTTTAATTCGTTTGGACAA CCAAATCATACCTCGTAGCTGGTATCCTTGTTGTCCTCACGTGAAACGTT CCGCTTCTGTGTCCGCAGGGCAATGGCGAGGGAAAGCGAGCTGATCATGG TGAGGTGCCTTGCCTTCGACCCATCCGTGTTTCCCGGCTACCGCCACAGC ACAACCGACCCTCAGGTAAACAAAACGACTGAGTTGTATTCTAGCTCTTT CGTTGATTGACTGAATGTTTGTCAAGAAGCGCGTGGAGCAGCGAAGGGAA TTCTGGCCCCAGGCAAGACGACGCGGAAGAACTTTCGGCCTCTGGCTAAA TTAAGTCACTGAGCTTGCGGTGGTTACCATGGGCTGCGGTGGATGTCTGG CCGATGTAAGCGTTATGGAAATTGTCAAGTCGGAGTGAATACCACAGAAG TTATGAAGCCCAAGTCGATACTACCCGTCGTCCACCGCCATACTTCTATC TCAGTCAACCTTTTTTGCATTTTGTGTTCCTGTGCCCCTGTTTCTTTTCC ACAGGCAAAGAAGTTCGACGCGGGAGGGGCCAGGACGAACGTGTTCTGCC GGGCGAGATCCGAGCTTGACGACAACGTGAGCACCGTTGAAGTTCATTCA TGTTTTCCAGGTGCATGCATACATCCTCCCCAACAGCCAAGAACATTTTC GTTTAATGAACTGGAAGGAACACCCCCATTGTTTTATCCCGTCATCCCGC TGCCTAATTCACACAAGCACATATTTTTTCAAGCTTTGTTAAACCCTTCC ACATGAATTGCGAATCGGTCAGACCAGAACGGGTAAGTGACGATGTGTCT CCCGCGTGCATTCCGGCGGTGCGTGGATGCTGAATGGGCTGCTTGCGCTG TGATCCTTGCCGTGTGCTTGTGAAGCCAACCCGGGAAACGAAGCTCTTGC TGCTGCGATTTGTCACAATATCAGCTCGAGACGCGTCGGTTCACGCACGC CTGATGTCTCTATTTACAACGTTGCGCGTGGATTGACTGTTGTACCCAGG TGGATGAGTCAGGCACCTTCCCGGTGATTGTGCGACGGGGGGGGGCAGTC TCCCCTGCGAAACCGTTTGCGACTGCCAACAATACCGGCGGCAGCAACAA TTCCGACGACAGCGTCGACGGTGATGACCGCAGCAGTGAAGAAGACAACG CTAGCGACAACAGTGACTTGTTCGGCTGGGGCGGCTGCGGGAGCGGGGAC CCCGACGCCGGCCTGGGGTCTTGGGACGACGACCAAGGAAAAAGCGAAAG GACAACCGCCTCGGAGGGTGCGGGCGGTGACGCCCACGGCAGCGGCGGTG TTGATCAGGCGGCCGCTGATGCTAATGGCAGGAAGAACCGAGGGAAGAAG AAAACTGGTGAAAACGGCGGTGGCGGCGGTGTTCCCAGTGGCAAGGAAGT TGGGGGGGTTGTTGAGGGGAAGGGGGTGGCATCGAATGGGGCGTCGAAAC GCGGCATGCTTCAGCCTCCTGTGCAGAAGAAGAAGGCCGCGAAGCGTAGA GCACAGCGCAAGCGAAAGGCCGCCGCTGCTAAAGAAGCAGTAGCCGCTAC AGCCGCTGCGGCAGAAGGGGCGCCGAGAGGAGAGGGTTTCCCTCAGGACG ACGGCGTGGTGCCTGCCAACAAGACAAAGATTCCCAAGCGAAAGCGAGGG AAGTACGTCGTCAATTCGGCGAAGAAGCGGCCGAGAGATTGATTCATTAG TTTGCGGCTCCGAGAACCGGCAAATTGTTTTTTGGTCACTGCTGTGGCTC CTTGCAAGGTTATTTTGTTTTGTGATGTGATTGAGACACATAAACCCTTG CGATGCAAGCTGGGAAACAACAACCGTGAGAGCTGGGAAACAACTTGTTG CCGTGCTTCGCGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1528:4970..9585+

>mRNA_Ecto-sp13_S_contig1528.3968.1 ID=mRNA_Ecto-sp13_S_contig1528.3968.1|Name=mRNA_Ecto-sp13_S_contig1528.3968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1528:4970..9585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGTTCCGAGGGCACCAGGATAAGAGCCGGAGGGGAAGGGAGAA
GAAGCTCCTCAAGAAGAAAGCCGGGGCGGCTGCTGGGGGAATTCGCGCCG
TGGCGGCGCAAGCTGAGTCGGCCCTTCCCGGCGGCGACTCTCTGACCAGC
AGCAGTCCTGGCCGTCCACAACAGCGGGGGGTAGTAGGCGCCAAGAGGAA
GCTCAAGCACGTGACGTACGCCAAGGAACACTCGGTGCTCATCGTCGGAG
ACGGCGACTTCAGCTTCACGCGTGGCGTTATCCGGCACCGGGGAACGGGA
GCTGGTGTCGTGGCGACGTCCCTGGACTCCGAGAAAGCCGTACTCCAGAA
GTACCCGCGAGCCGAGACGTGGCTCCCCAAACTTGAAGCAGACGGAGCCC
AGGTTGCTCACTCTGTAGACGCGACCAGGCTGGAGGAAACCCTCCTAGGG
GCCGGTGAAGGCCGGGGAGATGACGGGGGTGGAGGCGGAGTTGCTGGAGA
GAAGAAGCGAGTTTTGTTCGATCGCGTCGTCTTCAACTTCCCCCACACCG
GTGCCCAGAGGACACACCTTAACCGTAACCTCATCCGAGACTTCTTCGCC
AGCACCAAGGGATTGGTGAAGTGCGCGGCGGCCGGGGGAGAGGTGCATGT
TACCCTCAAGGACAAGCCTCCGTACTCGGGCTGGAACGTGAAGGCAATGG
CGAGGGAAAGCGAGCTGATCATGGTGAGGTGCCTTGCCTTCGACCCATCC
GTGTTTCCCGGCTACCGCCACAGCACAACCGACCCTCAGGCAAAGAAGTT
CGACGCGGGAGGGGCCAGGACGAACGTGTTCTGCCGGGCGAGATCCGAGC
TTGACGACAACGTGGATGAGTCAGGCACCTTCCCGGTGATTGTGCGACGG
GGGGGGGCAGTCTCCCCTGCGAAACCGTTTGCGACTGCCAACAATACCGG
CGGCAGCAACAATTCCGACGACAGCGTCGACGGTGATGACCGCAGCAGTG
AAGAAGACAACGCTAGCGACAACAGTGACTTGTTCGGCTGGGGCGGCTGC
GGGAGCGGGGACCCCGACGCCGGCCTGGGGTCTTGGGACGACGACCAAGG
AAAAAGCGAAAGGACAACCGCCTCGGAGGGTGCGGGCGGTGACGCCCACG
GCAGCGGCGGTGTTGATCAGGCGGCCGCTGATGCTAATGGCAGGAAGAAC
CGAGGGAAGAAGAAAACTGGTGAAAACGGCGGTGGCGGCGGTGTTCCCAG
TGGCAAGGAAGTTGGGGGGGTTGTTGAGGGGAAGGGGGTGGCATCGAATG
GGGCGTCGAAACGCGGCATGCTTCAGCCTCCTGTGCAGAAGAAGAAGGCC
GCGAAGCGTAGAGCACAGCGCAAGCGAAAGGCCGCCGCTGCTAAAGAAGC
AGTAGCCGCTACAGCCGCTGCGGCAGAAGGGGCGCCGAGAGGAGAGGGTT
TCCCTCAGGACGACGGCGTGGTGCCTGCCAACAAGACAAAGATTCCCAAG
CGAAAGCGAGGGAAGTACGTCGTCAATTCGGCGAAGAAGCGGCCGAGAGA
TTGA
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