mRNA_Ecto-sp13_S_contig1528.3967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI) HSP 1 Score: 628 bits (1619), Expect = 2.950e-222 Identity = 329/347 (94.81%), Postives = 334/347 (96.25%), Query Frame = 1
Query: 1 MIVKPCIAVSAAVGLTSSALVGALHASGPGGLPRGARGTATRGGQGMEATGSGFDLGGWLKQAFTPQTAAAVKKKAGTSAAKEKKAPSGRGCTDAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDASTPGLFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGEEGSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
MIVKPCIAVSAAVGLTSSALVGALHASGPGGLPRGARGTATRGGQGMEATGSGFDLG W KQAFTPQTAAAVKKKAGTS AK+ KAPSGRGCTDAVLVLGGTGKTG+KVVEALLKQKRDVVVASRSKESAAELYDASTPGLFVQ+G VDVRDEATLKNKALF+GVTQVVSALGPRFGEEGSSSEAVDFQGVQS IEAAEAFLEQGDGS PGD ERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEW+EV
Sbjct: 1 MIVKPCIAVSAAVGLTSSALVGALHASGPGGLPRGARGTATRGGQGMEATGSGFDLGDWFKQAFTPQTAAAVKKKAGTSTAKKAKAPSGRGCTDAVLVLGGTGKTGQKVVEALLKQKRDVVVASRSKESAAELYDASTPGLFVQSG----VDVRDEATLKNKALFDGVTQVVSALGPRFGEEGSSSEAVDFQGVQSAIEAAEAFLEQGDGSSAAPGDQERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWIEV 343
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A836CBF4_9STRA (NADH:ubiquinone oxidoreductase complex I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF4_9STRA) HSP 1 Score: 187 bits (474), Expect = 6.560e-51 Identity = 121/254 (47.64%), Postives = 149/254 (58.66%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAE-LYDAS-TPGLFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGEEGSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWV 1035
DAVLV+G +G+ GR+VV+ LL R VV A R++ E L DA+ GL+V+ G+DV E + FEGVTQVVS LGP F + ++EAVD++G +V+ A E G S L D S P W PLDDVIMGG+SSSAW G + F RW+G LVT+GGGFCGTV+K + FD GYDGIR+ VRGDGSR+KFRLKP + E QYQA FDTV G WV
Sbjct: 64 DAVLVIGASGRAGREVVKELLASGRSVVAAGRTQSKITEALGDAAGARGLWVK----EGLDVTAEEI--PETFFEGVTQVVSCLGPSFSDPALNAEAVDYRGNAAVLRACE---RAGLASTAAAAAASAPLC---DFASGASLP--EWAPLDDVIMGGKSSSAWDAAAGD--------RDFARWSGELVTDGGGFCGTVVKKLNFDTAGYDGIRLVVRGDGSRFKFRLKP-ADMAQANEYQYQASFDTVDGAWV 294
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A383VFN0_TETOB (Uncharacterized protein n=3 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VFN0_TETOB) HSP 1 Score: 158 bits (399), Expect = 1.250e-39 Identity = 114/280 (40.71%), Postives = 151/280 (53.93%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDAS---------------TPGLFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDG-ERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTV-KGEWVEV 1041
+AVLV G +GK GRKVVE L++ R V+ A RS + AAE+++A+ + G+ + A GVDV + ATL + LFEGVTQVVSALGP G +G S E V+ QG+ +++ A L + + G G + P S D AW+ LDDVIMGG SSSA LE + + W G LV EGGGFCG K + D +GYDG+++RV+GDG +KF +K D D T E YQA FDT +G+W V
Sbjct: 106 NAVLVFGASGKLGRKVVERLVRSGRTVIAAVRSADKAAEVFEAAGLKEGYQQPSGNGSGSGGILITAA---GVDVTNPATLSAE-LFEGVTQVVSALGPVAGRLPDGSFGYIDGMSPERVETQGMANIV----AALAKHAPGIASAGSGISSSSILPMASAEDLA----AWERLDDVIMGGNSSSA---------LEAAADGSGAVWKGDLVVEGGGFCGARTKALDMDLSGYDGLQLRVKGDGQIFKFNIKTDQ--DATPESTYQATFDTSPEGDWTTV 362
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A7S3QMA4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QMA4_DUNTE) HSP 1 Score: 151 bits (381), Expect = 2.800e-37 Identity = 104/276 (37.68%), Postives = 146/276 (52.90%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDASTPGLF--VQAGKPN------GVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSVIEAAEAFLEQGDG----SLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKD-MPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
+AVLV+G G+TGR+ V+ LL+ R VV A R+ + AA + G+ VQAG GVDV TL+ L++GVTQVV+ LG +FG++ G + EAV+ GVQ+++ A + + G +++ GE+V + W +DDVIMGG+SSS W+ G RW G L+ EGGGFCG K M D + YDGI +RV+GDG +K +K ++D T E YQA FDTV G+W +V
Sbjct: 113 NAVLVIGAAGRTGRQAVQQLLQSGRTVVAALRTADKAAAAEAMGSMGIQEGVQAGGKGILFYETGVDVTKPETLRRPELWKGVTQVVTCLGGKFGKQPDGSMGYIDGCTPEAVEALGVQNLVAAMSEQVPKQTGVQYQAMMPEAAGEQVAM---------------WDRMDDVIMGGQSSSLWEPAP-------DEGPHVARWKGDLIVEGGGFCGARTKPLMQTDWSAYDGIALRVKGDGQIFKLNIKTLEQVD-TPESTYQATFDTVDGQWHDV 365
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A7S1SQV2_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQV2_9CHLO) HSP 1 Score: 147 bits (371), Expect = 8.050e-36 Identity = 105/279 (37.63%), Postives = 147/279 (52.69%), Query Frame = 1
Query: 256 APSGRGCTDAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDASTPGLFVQAGKPN--------GVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
A +G+ DAVLV+G GK G +V ALL R VV A R + +A + GL A GVD+ TL ++ LF GV QVV+A+GPRFG++ GSS VD +GV +++ AA+A L +G +++ +R W+PL+DVIMGG+SSS + G + G W+GT++ EGGGFCG + +DGIR+RV+G G R+K LK + ++D E YQA F+TV+GEWVEV
Sbjct: 132 AAAGKEKRDAVLVVGSAGKLGAEVTAALLAAGRCVVAAGRQSDESALEAALAEAGLKAGAASVGDGYLHLAPGVDISRPETL-SRELFRGVAQVVAAVGPRFGKQADGSMGFGAGSSPAEVDAEGVAALVAAAQAHLPS-----VGTRRSAAEVLSLATEEDVQR-----WRPLNDVIMGGQSSSGMELLTNG-----EDGSAV--WSGTVIVEGGGFCGLRTEPADLKLDDFDGIRLRVKGGGQRFKLNLKTEEQMD-VPESTYQACFNTVEGEWVEV 391
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A0D2N0U4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0U4_9CHLO) HSP 1 Score: 143 bits (361), Expect = 1.020e-34 Identity = 112/276 (40.58%), Postives = 145/276 (52.54%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDA-------STPG-----LFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVK-GEWVEV 1041
+AVLVLG TG+ GR +V+ LL+ R VV A R+ + A+E++ A G LFVQAG VDV DE+TL LF GVTQVVSALG G +G + EAV+ +G+ +V+ A + L P V P + D AW+ LDDVIMGG SSS LE SG W G LV EGGGFCG + + D + +DG+R+RV+GDG +KF +K + D T E YQA FDT + G+W V
Sbjct: 27 NAVLVLGATGRAGRLIVQELLRSGRTVVAAVRTADKASEVFSALELQEGRQAEGKGDGILFVQAG----VDVTDESTL-TPDLFAGVTQVVSALGGVTGRLPDGTFGYLDGMTPEAVEAKGMANVVAAMKQHLA--------PQIRTTQEVLPMRTAEDLE----AWERLDDVIMGGSSSSGLT------ALEDGSGAA---WKGDLVVEGGGFCGARTRKLGLDLSQFDGLRMRVKGDGQTFKFNIKTADQED-TPESTYQATFDTSEEGDWTTV 275
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A2V0P7E0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7E0_9CHLO) HSP 1 Score: 144 bits (363), Expect = 1.030e-34 Identity = 105/271 (38.75%), Postives = 139/271 (51.29%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELY----------DASTPGLFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVK-GEW 1032
DAVLVLG TG+ GR +V+ LL+ R VV A RS + A E++ + S LFV AG VDV E TL + LF GVTQVVSALG G +G + EAV+ +G+ +V+ A F+ P +V + D AW+ LDDVIMGG SSS GG E W G L+ EGGGFCG + + D +G+DG+++RV+ DG +K +K + D T E YQA FDT + G+W
Sbjct: 117 DAVLVLGATGRAGRAIVQQLLRDGRTVVAAVRSADKATEVFSSLGVAEGRQEGSGGILFVDAG----VDVTKEETLTEE-LFRGVTQVVSALGGVAGRLPDGGFGYLDGMTPEAVEAKGIANVVAAMARFMA--------PAKRASEVVLSMRTAEDLE----AWERLDDVIMGGSSSSGLGPAADGGGAE---------WKGDLIVEGGGFCGARTRKLGLDLSGFDGLQLRVKSDGQTFKLNVKTADQED-TPESTYQATFDTAEDGDW 360
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A5J4Y258_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y258_9CHLO) HSP 1 Score: 142 bits (358), Expect = 5.090e-34 Identity = 101/273 (37.00%), Postives = 144/273 (52.75%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYDAST---PG-LFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSVIEAAEAFLEQGDGSLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQK-----GVGGGVLERQSGKTFGR-WAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
DAVLV G +G+ G++VV L+ R VV S + + + T PG L+ + N VD+ D A L +K L++G++QVV+ +GP FG + +SE VD +G+ ++ +AAE FL P + E+VL S +D W+ LDD IMGG+S S Q G G ++Q G W G +T+GGGFCG K + + +DGI +RV+GDG YKF LK ++ N E YQA +DT+ GEWV V
Sbjct: 124 DAVLVFGASGRLGKQVVAELVGAGRHVVATSHKADKLEQAFAGETAEGPGHLYFE----NCVDITDSAALMSKELWQGISQVVTTVGPAFGRQPDGGMGYIDNMTSERVDAEGISNIAKAAEHFLPA---QRFQP-EVEQVLSMR--SAADLE----VWEKLDDTIMGGKSGSYLQTAEDLHGFQGDYKDKQPYDFEGSVWRGETITDGGGFCGARTKMLDLNLQRFDGISLRVKGDGQTYKFNLKTADQM-NVPESTYQAQYDTIDGEWVTV 381
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A7S0RVS8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RVS8_9CHLO) HSP 1 Score: 141 bits (355), Expect = 1.180e-33 Identity = 101/279 (36.20%), Postives = 143/279 (51.25%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESA------AELYDASTPG----LFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGE---------EGSSSEAVDFQGVQSVIEAAEAFLEQGDG----SLIGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMP--FDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
+AVLVLG +G+ GR+VVE L+K R VV A+RS ++A A L + + PG LF +A VD +LK L++GVTQVV +G + G +G + E V+ G+ +++ L + +L+ G + V V W+ +DDVIMGG SSS + L + G RW G L+ EGGGFCG K M D +GYDG+ +RV+GDG +K +K +LD+ E YQA FDTV G+W +V
Sbjct: 128 NAVLVLGASGRVGRRVVERLIKMGRTVVAATRSTDTAKAALGEAGLVEGAQPGGKGILFYEAADVTSVD-----SLKRAGLWKGVTQVVLCVGGKAGPLPGGGFGYIDGLTPEVVEAGGIANLVSVLPEVLPKQASLQYTTLVPMGTTDEVAV---------------WERMDDVIMGGNSSSVIE-------LAPELGAGITRWRGELIVEGGGFCGARTKAMADGADLSGYDGVALRVKGDGQIFKINIKTTDQLDSP-ESVYQATFDTVPGQWTDV 378
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Match: A0A7R9YYX1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YYX1_9CHLO) HSP 1 Score: 137 bits (345), Expect = 2.020e-32 Identity = 103/275 (37.45%), Postives = 142/275 (51.64%), Query Frame = 1
Query: 280 DAVLVLGGTGKTGRKVVEALLKQKRDVVVASRSKESAAELYD--ASTPG--------LFVQAGKPNGVDVRDEATLKNKALFEGVTQVVSALGPRFGEE---------GSSSEAVDFQGVQSVIEAAEAFLEQGDGSL--IGPGDGERVLVAPGDSGSDERGPGGAWQPLDDVIMGGRSSSAWQKGVGGGVLERQSGKTFGRWAGTLVTEGGGFCGTVIKDMPFDATGYDGIRIRVRGDGSRYKFRLKPDTKLDNTAERQYQAPFDTVKGEWVEV 1041
+AV+VLG TG+ GR+VV ALL+ R VV A RS+E A ++Y+ PG LF+ AG VDV + TL L+ GVTQVVS LG FG + G S E V+ G ++ L++ + + P E L W+ +DDVIMGG SSS+++ GGV G T W G L+ +GGGFCG + + +G DG+ +RVRG+GS +K +K +LD+ E YQA FDTV G+W +
Sbjct: 100 NAVMVLGATGRVGRRVVRALLQSGRTVVAAVRSEEKALKVYEEVGVQPGKQKDGKGILFINAG----VDVTRQETLDRADLWSGVTQVVSLLGSVFGPQPDGSMGFIDGMSPERVEAGGSAALAAVLPKHLKKAQMVVKDVLPMVTEEDLAK--------------WERMDDVIMGGISSSSFELLEDGGV----KGAT---WKGDLIMDGGGFCGCRTVRIDTNLSGTDGLALRVRGNGSTFKLNIKTQEQLDSP-ESTYQATFDTVAGQWTNI 348 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1528.3967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1528.3967.1 >prot_Ecto-sp13_S_contig1528.3967.1 ID=prot_Ecto-sp13_S_contig1528.3967.1|Name=mRNA_Ecto-sp13_S_contig1528.3967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp MIVKPCIAVSAAVGLTSSALVGALHASGPGGLPRGARGTATRGGQGMEATback to top mRNA from alignment at Ecto-sp13_S_contig1528:343..4804- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1528.3967.1 ID=mRNA_Ecto-sp13_S_contig1528.3967.1|Name=mRNA_Ecto-sp13_S_contig1528.3967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1528:343..4804- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1528:343..4804- >mRNA_Ecto-sp13_S_contig1528.3967.1 ID=mRNA_Ecto-sp13_S_contig1528.3967.1|Name=mRNA_Ecto-sp13_S_contig1528.3967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1528:343..4804- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |