prot_Ecto-sp13_S_contig15270.3964.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15270.3964.1
Unique Nameprot_Ecto-sp13_S_contig15270.3964.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length428
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 5.920e-50
Identity = 222/428 (51.87%), Postives = 224/428 (52.34%), Query Frame = 0 
Query:    1 REAHQQFVREGEQQLAKEMSFRDVNERARNAHTLGTATLTNKIERMHRRGRERQQARQMLKWNEEEAFQERQQQERKKGKSAAYQLRKSSSRGRTVPRGDTPDHRHRTVATMEQEQTQATPSSSQQLLADSVLTGDRPSAKKPQGGSPGDKKPTKRLITTDLETRHTQHTVDSAGQPLENHQEEAGVGIGAKDRDGARRKRKGGGSAGDSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLRTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNMPQLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD 428
            REAHQQF REGEQQLAKEMSFRDVNERA+NAHTLGTATLTNKIERMHRRGRERQ                                                                                                                                                                                                       INMPRNSLELLIS RNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSL+T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNNMP LAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD
Sbjct:  130 REAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD 358
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BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Match: A0A836CM02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM02_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.960e-11
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 0 
Query:  209 DSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTM--------------------QLGTLSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLRTL 306
            D+ ++   +R+L T G LD  QQG   +P ++  TL +                    QLG L ++N+PRN L+ L++  N   SCAH RSV ++NLSGN L  LP E  R  +L+TL
Sbjct:  161 DAAQLLHGVRRLLTAGVLDLPQQGLAALPPDVSTTLALXXXXXXXXXXXXXXPCSDLQQLGGLRRVNLPRNELKQLLTVDNAALSCAHFRSVTDMNLSGNGLTALPAEMGRCVALQTL 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE74_ECTSI5.920e-5051.87Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CM02_9STRA8.960e-1137.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 323..345
e-value: 0.73
score: 18.9
coord: 300..322
e-value: 0.5
score: 19.4
coord: 277..299
e-value: 17.0
score: 11.4
coord: 346..369
e-value: 0.14
score: 21.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 224..426
e-value: 1.7E-31
score: 110.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 325..381
e-value: 1.9E-8
score: 33.9
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 348..369
score: 7.242
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 371..392
score: 6.156
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 325..347
score: 6.788
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 279..300
score: 5.941
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 302..324
score: 7.412
NoneNo IPR availablePANTHERPTHR45752FAMILY NOT NAMEDcoord: 250..381
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 244..390

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15270contigEcto-sp13_S_contig15270:190..4211 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15270.3964.1mRNA_Ecto-sp13_S_contig15270.3964.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15270 190..4211 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15270.3964.1 ID=prot_Ecto-sp13_S_contig15270.3964.1|Name=mRNA_Ecto-sp13_S_contig15270.3964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
REAHQQFVREGEQQLAKEMSFRDVNERARNAHTLGTATLTNKIERMHRRG
RERQQARQMLKWNEEEAFQERQQQERKKGKSAAYQLRKSSSRGRTVPRGD
TPDHRHRTVATMEQEQTQATPSSSQQLLADSVLTGDRPSAKKPQGGSPGD
KKPTKRLITTDLETRHTQHTVDSAGQPLENHQEEAGVGIGAKDRDGARRK
RKGGGSAGDSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGT
LSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRL
TSLRTLRLDNNKLSGLPEGLLNLTSLTHLSLRHNNFSNLPNRFGDLHRLE
KLDLGENMLKTLPPTMGLLTSLKHLKLDGNNMPQLAVPPLLKTSNGKDQC
ASWVKRWNRDKKREMWVNDVTGETSDVD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt