mRNA_Ecto-sp13_S_contig15270.3964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15270.3964.1
Unique NamemRNA_Ecto-sp13_S_contig15270.3964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 5.920e-50
Identity = 222/428 (51.87%), Postives = 224/428 (52.34%), Query Frame = 1 
Query:    1 REAHQQFVREGEQQLAKEMSFRDVNERARNAHTLGTATLTNKIERMHRRGRERQQARQMLKWNEEEAFQERQQQERKKGKSAAYQLRKSSSRGRTVPRGDTPDHRHRTVATMEQEQTQATPSSSQQLLADSVLTGDRPSAKKPQGGSPGDKKPTKRLITTDLETRHTQHTVDSAGQPLENHQEEAGVGIGAKDRDGARRKRKGGGSAGDSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLRTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNMPQLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD 1284
            REAHQQF REGEQQLAKEMSFRDVNERA+NAHTLGTATLTNKIERMHRRGRERQ                                                                                                                                                                                                       INMPRNSLELLIS RNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSL+T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNNMP LAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD
Sbjct:  130 REAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVD 358
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BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Match: A0A836CM02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM02_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.960e-11
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  625 DSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTM--------------------QLGTLSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLRTL 918
            D+ ++   +R+L T G LD  QQG   +P ++  TL +                    QLG L ++N+PRN L+ L++  N   SCAH RSV ++NLSGN L  LP E  R  +L+TL
Sbjct:  161 DAAQLLHGVRRLLTAGVLDLPQQGLAALPPDVSTTLALXXXXXXXXXXXXXXPCSDLQQLGGLRRVNLPRNELKQLLTVDNAALSCAHFRSVTDMNLSGNGLTALPAEMGRCVALQTL 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15270.3964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE74_ECTSI5.920e-5051.87Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CM02_9STRA8.960e-1137.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15270contigEcto-sp13_S_contig15270:190..4211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score193.7
Seed ortholog evalue1.7e-46
Seed eggNOG ortholog2880.D8LE74
Model size1284
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-00_001180.3
Cds size1284
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15270.3964.1prot_Ecto-sp13_S_contig15270.3964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15270 190..4211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462812.087917-CDS-Ecto-sp13_S_contig15270:189..3511681462812.087917-CDS-Ecto-sp13_S_contig15270:189..351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 190..351 +
1681462812.1010332-CDS-Ecto-sp13_S_contig15270:609..12061681462812.1010332-CDS-Ecto-sp13_S_contig15270:609..1206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 610..1206 +
1681462812.1110442-CDS-Ecto-sp13_S_contig15270:1464..16161681462812.1110442-CDS-Ecto-sp13_S_contig15270:1464..1616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 1465..1616 +
1681462812.1203983-CDS-Ecto-sp13_S_contig15270:2254..24411681462812.1203983-CDS-Ecto-sp13_S_contig15270:2254..2441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 2255..2441 +
1681462812.1297178-CDS-Ecto-sp13_S_contig15270:2582..27261681462812.1297178-CDS-Ecto-sp13_S_contig15270:2582..2726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 2583..2726 +
1681462812.1437538-CDS-Ecto-sp13_S_contig15270:4169..42111681462812.1437538-CDS-Ecto-sp13_S_contig15270:4169..4211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15270 4170..4211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15270.3964.1

>prot_Ecto-sp13_S_contig15270.3964.1 ID=prot_Ecto-sp13_S_contig15270.3964.1|Name=mRNA_Ecto-sp13_S_contig15270.3964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
REAHQQFVREGEQQLAKEMSFRDVNERARNAHTLGTATLTNKIERMHRRG
RERQQARQMLKWNEEEAFQERQQQERKKGKSAAYQLRKSSSRGRTVPRGD
TPDHRHRTVATMEQEQTQATPSSSQQLLADSVLTGDRPSAKKPQGGSPGD
KKPTKRLITTDLETRHTQHTVDSAGQPLENHQEEAGVGIGAKDRDGARRK
RKGGGSAGDSNEIAFMLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGT
LSKINMPRNSLELLISQRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRL
TSLRTLRLDNNKLSGLPEGLLNLTSLTHLSLRHNNFSNLPNRFGDLHRLE
KLDLGENMLKTLPPTMGLLTSLKHLKLDGNNMPQLAVPPLLKTSNGKDQC
ASWVKRWNRDKKREMWVNDVTGETSDVD
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mRNA from alignment at Ecto-sp13_S_contig15270:190..4211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15270.3964.1 ID=mRNA_Ecto-sp13_S_contig15270.3964.1|Name=mRNA_Ecto-sp13_S_contig15270.3964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4022bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15270:190..4211+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAAGCACATCAGCAGTTCGTCCGAGAAGGCGAGCAGCAACTCGCGAA
GGAAATGTCATTTCGGGATGTGAACGAGAGAGCCAGGAACGCGCACACTC
TTGGCACGGCTACGCTCACCAATAAAATCGAGCGGATGCATAGGCGTGGA
CGAGAGCGACAGGTAAAATGCGTGTATTTCGTGTTAATTCCGCGCGTTCG
ACCTAGCCACGTCGCCGTAAAGAGAGTCAAGCAAGCAAAATATAGTGCAA
ATTCAACGAGAACAACAAGGAGAAACAAAACGAATCTTGCATTGCACGGA
CAACTATCAAAGGTGCGGTAACCAGATATCTCCAATATTGTCTAAGATCT
ACCAGACTAGAAACGCTGCAGCGGTGGACATATTGAAGTTGGGTCATCGG
CTATCGGCTGCTCTTGATAGCAGGCAAGGCAAATGCTGAAGTGGAACGAA
GAAGAAGCTTTCCAGGAGCGGCAGCAGCAGGAAAGGAAGAAGGGAAAAAG
CGCTGCTTACCAGCTCCGGAAGAGTTCAAGCAGAGGCAGGACAGTTCCTA
GAGGGGATACCCCCGATCATAGACATCGTACGGTGGCAACGATGGAACAA
GAACAAACCCAGGCTACCCCTTCCTCTTCGCAACAGCTCCTAGCCGACTC
CGTCCTGACGGGCGACCGCCCTTCGGCCAAGAAGCCGCAGGGTGGTTCTC
CAGGCGATAAAAAACCCACCAAGCGCCTTATAACCACGGATCTTGAAACG
AGGCATACACAGCACACGGTGGATTCCGCAGGGCAACCGTTGGAAAACCA
TCAGGAGGAAGCAGGGGTAGGCATAGGTGCCAAGGACAGAGACGGGGCAA
GGAGGAAACGCAAGGGAGGAGGCTCCGCGGGCGACTCGAACGAAATAGCC
TTTATGCTAAGAAAGCTGTATACAGGTGGCGGGCTGGACGCGCAACAGCA
GGGGTGGAAGTGCATGCCCACCAACTTGTTCAACACGCTTACGATGCAGT
TGGGAACGCTGAGCAAGGTTCGTATCGAGCTAAGGTGCTTCTTTTCCCCT
TTTCCATGAACATGTATCCAGTTGGCCTCCCGTCCCTCTGGGTGCACACT
GGGCCATGGTGGAGTGTCTGTTGCCGATCAACAACCTTCTATCAACTATG
AAAAATCTAGTGATGGTCGAAACGGCGACAGTTTTCCACAGACCCATCGA
TGCTATGTTGTTGCGATCGCGTAAATGGATCGTATGTGACTCTTGTCCCG
CTCTCCGCCCGTTTGTGTCGATCAGATCAACATGCCTCGCAACAGCCTTG
AGCTCTTGATCTCCCAGCGGAACCCCAACTTCTCCTGCGCACACATGCGT
TCGGTCGGGGAAATCAATCTCAGCGGGAACAAGCTGAGAGAGCTCCCCGA
GGAAGCACAAAGGCTTACCAGTCTTAGGTGAGACTCCGCCGCAATAATCT
GCGTCTAGATTGCACACTGACGCTCAACGAAACATGTGCCGCGATAAGTC
TTACTAGTAGTGCAGGTGCAGAGCACTCAATGTCAATGAACTCATCGCTT
CCCTAAGTACCATACGAGACACATGGACATGACAACGCAGGAAGTGTAGA
GAGATTGCTTGTCTCTTGATGTGCATGAAGGCTGGTTTGCTAGATGGTTG
TGTTGCTTGCTAATTGGGTGGGTGCTATCCGGGGCAAAATACATCGTGAC
ACCTACGGTAGATGGGAGGGTTGCTAGGTAGATGAACATGCTCCAATCTG
TACAGCTTTTGTCTCTCTCCTCGTTGGTCAAGGGATTAATTATTCTACAC
GGCCAATTAGAGGACTTGTCAAGTTTACTGATCACCTCTGATGTGCTCAC
CAGCTAGCCCCTCTGACCCCTACCCCAACCCTTCCCCCGTGCGCGGCGCT
CACAGCTTCGTGTGACCGCAGGGCCGTCTTTGGATACCCATCCTTCAAGC
TGACTGCGGTACACCGACGACACGCCTTTGTTTCAAAAAGCCTCCGTCTA
CAGCAATGTTCAAAGTTCCACAACCTGGCCATGCTATGCCCGTTTGAACG
CTCCGTTTCCTGCAGAACGCTTCGCCTAGACAACAACAAGCTTAGCGGGT
TACCAGAAGGGCTGCTGAACCTAACGTCCCTCACGCACCTGAGCCTGCGA
CATAACAACTTCTCCAACCTGCCCAACCGCTTCGGCGACCTCCACCGCCT
TGAAAAGCTGGATTTGGGCGAGAACATGCTCAAAACGCTTCCACCCACTA
TGGTACACCTGCACAACGAGTGGAAAGTCTTCGTCTATTTGAAAACTCAA
TTGATTTTGCTTCGCAGAGTATTGGTGAACAATCCGATTCTCTTCATCGC
AAGTTAATTTGTCGCATTTTTCGACGCTGAAATTGGCAATTAGGGTCTTC
TGACATCGCTAAAGCACCTCAAGCTGGACGGGAACAACATGCCCCAGTTG
GCTGTGCCCCCCCTCCTCAAGACGTCGAACGGGAAGGACCAGTGCGCCAG
CTGGGTCAAGCGGTGGAACAGGGACAAGAAAAGAGAGGTCAGTAGGTCGT
CGAATGCTATCCCATCTCACGTGATGTTCCTTCACTACACCTGTTCGCGC
TGCCGTATTCATTGCTGAACTCCTTGATTGACCAACCTCTGCAAACACTT
CATCTCCGACCTCTTTGAAAGATACTCACTGGGGGCTAGCTTTTTGAATT
GGTTAACATTGGCTGAACAACCGCGGTCTGGAGCCGACCTCTTCATTTCT
TTGCCACGCACATGGAATCAATCACAATGCGTTTGATTGATGGGACGCTT
TGAAGACGTATTCAGAGGCTACTGATGCTGGTCACAACCTCTCGTTCGTC
CTCCTCCACTCTCTTCCTTTCGTGCAGTGCCTTGTGCTCTGACAACCAAT
GTCAACGCATTTTCTCCATATATGCATATGTAGGATTTCAACTTTTTTGG
TGCTCGGGTCGCACTTTCTTCTGCATGGCACGCAGAGGACCCGTCGGTAC
ATTACCCGTTATGTGTGGGGATCGCGAGACACTGGTGGTGCGCGTGAGGG
CCGCCTCAAGTCGCTGGAGCTGGCTCTTTTTTCAGAGGTTGGGAATCCGA
ACCCATAAGGCCTCCTCGAACGGCATGAAAACTGAAAACACAACTTCCTT
TTGCCCCGCGCCACGCGCCACGCGCCCACGCGCCCACACAGCTTCTGTGA
TTGTTGTGTACACACTTGCCACACAGCAACTGGCGCATGCGTACCCGCAG
CAGGGACCAAGAATCTTGGTGTTGCTCTCATCATGGAAAAAAACCTCGCC
GTACAGAGGTCCTCAAGCACAACTCACTCTGGCAGCGCGGTCATTTGAAT
TTCAACTTCGAAAAATCGAAAAATTCGAATACATACTAAAGTTTTGGTAC
TACTGTAGCAGTCTACGTCTGTCTGTCTGTGGCTGTTCTTGTGCACGTTG
AGCGTCTCTTCGGTCCGTTGTTGGTGTTTGCGTGAAATTTTTTTCACAGA
ACATGGGAAACACGATCACACAGAAGAGTAAGTGATCAAACGCAGCGGCT
TCCAGCAGTAGGACCTGCAGCAAATACAGCGCGAGCCTGCCTAAAAAGAG
CACACACTTGCGCAAAAGCAAAAAGTCTGGGCGAGAGAAAACAGAATACC
CCGCACATGATGTACATTCCTGGCAAATCAGAACGAAAACAGGTTGCACG
TAAACCGGCACTACCGAACGTCTCGACGACCAACCATGCGACCGCGATGA
CATTGATCGGCCATGTTCTCTTGCGTCGCCCCCGGGAGGCAAATCGCCAA
ACTCCCACAGGGGAACCATGTATTCAATGTAGTTTTCGTTCGCTAGTCAA
TCCACATTTCGACCGGCGAACTGAAATACCCCTTTTCTCGATTTAGAAAA
GTTCCTAACCTACATTTCCCTTAACGACACGCCGTTGGGGTGCTACGGGG
TGCTTCAACGCTACAAACTCCGTCGTCCAGATGTGGGTGAATGATGTTAC
CGGGGAGACTTCAGACGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15270:190..4211+

>mRNA_Ecto-sp13_S_contig15270.3964.1 ID=mRNA_Ecto-sp13_S_contig15270.3964.1|Name=mRNA_Ecto-sp13_S_contig15270.3964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15270:190..4211+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAAGCACATCAGCAGTTCGTCCGAGAAGGCGAGCAGCAACTCGCGAA
GGAAATGTCATTTCGGGATGTGAACGAGAGAGCCAGGAACGCGCACACTC
TTGGCACGGCTACGCTCACCAATAAAATCGAGCGGATGCATAGGCGTGGA
CGAGAGCGACAGCAGGCAAGGCAAATGCTGAAGTGGAACGAAGAAGAAGC
TTTCCAGGAGCGGCAGCAGCAGGAAAGGAAGAAGGGAAAAAGCGCTGCTT
ACCAGCTCCGGAAGAGTTCAAGCAGAGGCAGGACAGTTCCTAGAGGGGAT
ACCCCCGATCATAGACATCGTACGGTGGCAACGATGGAACAAGAACAAAC
CCAGGCTACCCCTTCCTCTTCGCAACAGCTCCTAGCCGACTCCGTCCTGA
CGGGCGACCGCCCTTCGGCCAAGAAGCCGCAGGGTGGTTCTCCAGGCGAT
AAAAAACCCACCAAGCGCCTTATAACCACGGATCTTGAAACGAGGCATAC
ACAGCACACGGTGGATTCCGCAGGGCAACCGTTGGAAAACCATCAGGAGG
AAGCAGGGGTAGGCATAGGTGCCAAGGACAGAGACGGGGCAAGGAGGAAA
CGCAAGGGAGGAGGCTCCGCGGGCGACTCGAACGAAATAGCCTTTATGCT
AAGAAAGCTGTATACAGGTGGCGGGCTGGACGCGCAACAGCAGGGGTGGA
AGTGCATGCCCACCAACTTGTTCAACACGCTTACGATGCAGTTGGGAACG
CTGAGCAAGATCAACATGCCTCGCAACAGCCTTGAGCTCTTGATCTCCCA
GCGGAACCCCAACTTCTCCTGCGCACACATGCGTTCGGTCGGGGAAATCA
ATCTCAGCGGGAACAAGCTGAGAGAGCTCCCCGAGGAAGCACAAAGGCTT
ACCAGTCTTAGAACGCTTCGCCTAGACAACAACAAGCTTAGCGGGTTACC
AGAAGGGCTGCTGAACCTAACGTCCCTCACGCACCTGAGCCTGCGACATA
ACAACTTCTCCAACCTGCCCAACCGCTTCGGCGACCTCCACCGCCTTGAA
AAGCTGGATTTGGGCGAGAACATGCTCAAAACGCTTCCACCCACTATGGG
TCTTCTGACATCGCTAAAGCACCTCAAGCTGGACGGGAACAACATGCCCC
AGTTGGCTGTGCCCCCCCTCCTCAAGACGTCGAACGGGAAGGACCAGTGC
GCCAGCTGGGTCAAGCGGTGGAACAGGGACAAGAAAAGAGAGATGTGGGT
GAATGATGTTACCGGGGAGACTTCAGACGTGGAC
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