prot_Ecto-sp13_S_contig15269.3962.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig15269.3962.1
Unique Name	prot_Ecto-sp13_S_contig15269.3962.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	237

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15269.3962.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 3.010e-142
Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0

Query:    1 ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGLFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASRSNHAAPIR 236
            ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLG+FQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASR +HAAPIR
Sbjct:  250 ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASRGSHAAPIR 485

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15269.3962.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15269.3962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LHX3_ECTSI	3.010e-142	98.73	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 56..236
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..55
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..33
None	No IPR available	TMHMM	TMhelix		coord: 33..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15269	contig	Ecto-sp13_S_contig15269:346..2305 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15269.3962.1	mRNA_Ecto-sp13_S_contig15269.3962.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig15269 346..2305 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig15269.3962.1 ID=prot_Ecto-sp13_S_contig15269.3962.1|Name=mRNA_Ecto-sp13_S_contig15269.3962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGLFQVGLFLLMT
LYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS
ENPLYNGAATMIRPYPLPKSAKAAKAAAVMEEDEATLAAAAAAAAAAGSD
TASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESE
TRYSHAPSYSDTYSDYGDRPARQQHASRSNHAAPIR*