mRNA_Ecto-sp13_S_contig15269.3962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15269.3962.1
Unique NamemRNA_Ecto-sp13_S_contig15269.3962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15269.3962.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 3.010e-142
Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 1 
Query:    1 ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGLFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASRSNHAAPIR 708
            ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLG+FQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASR +HAAPIR
Sbjct:  250 ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDSENPLYNGAATMIRPYPLPKSAKAAKAXXXXXXXXXXXXXXXXXXXXXGSDTASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESETRYSHAPSYSDTYSDYGDRPARQQHASRGSHAAPIR 485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15269.3962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX3_ECTSI3.010e-14298.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15269contigEcto-sp13_S_contig15269:346..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size711
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000830.1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.8397338-CDS-Ecto-sp13_S_contig15269:345..4711681462811.8397338-CDS-Ecto-sp13_S_contig15269:345..471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15269 346..471 +
1681462811.8500044-CDS-Ecto-sp13_S_contig15269:879..9961681462811.8500044-CDS-Ecto-sp13_S_contig15269:879..996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15269 880..996 +
1681462811.862208-CDS-Ecto-sp13_S_contig15269:1837..23051681462811.862208-CDS-Ecto-sp13_S_contig15269:1837..2305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15269 1838..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15269.3962.1prot_Ecto-sp13_S_contig15269.3962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15269 346..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15269.3962.1

>prot_Ecto-sp13_S_contig15269.3962.1 ID=prot_Ecto-sp13_S_contig15269.3962.1|Name=mRNA_Ecto-sp13_S_contig15269.3962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
ILFDECWGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGLFQVGLFLLMT
LYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS
ENPLYNGAATMIRPYPLPKSAKAAKAAAVMEEDEATLAAAAAAAAAAGSD
TASSDYEAKDDPEMQDDLSVMQSEYAGPADLEMIVEESEEDRTSSRYESE
TRYSHAPSYSDTYSDYGDRPARQQHASRSNHAAPIR*
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mRNA from alignment at Ecto-sp13_S_contig15269:346..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15269.3962.1 ID=mRNA_Ecto-sp13_S_contig15269.3962.1|Name=mRNA_Ecto-sp13_S_contig15269.3962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15269:346..2305+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTTGTTTGATGAATGCTGGGGCGAGACTGCGGACGATGACGCGGCAGG
TCTTCAAACGTTCTGCCCCGTAAGGCCGTGGACTTTCACAGGGCCCGGCC
TGCCGATGATGTTGGGTCTTTTCCAGGTGAGAGCGGGTTCTCACCATGGT
ATTTTTTATGAACCAGGATAGGAGATGTCCTCAAGGCGCTTGTGCAACAA
GTTAGTTGTTCGAACATGGGCAGAGGAGCGACGTACAAGCACCACGCCTT
CAGCACCTGTAATGGTGCTGACAAGGCAGGGAGCATGATCTTTGGGTTTC
AGAACAATTTTTTACTCGTGGGTGTAGACCTGACCGTGTTTGGTATGTGG
GTGTAACTCGAGGCTGTGGCCGATGTACCTTACAGCAAGGAATGAGGACA
ACTTGTCACACGACGGAACAACACTCCCAGTCAATCGCCCCCCCCATCTG
ATGCTACCGGGTCGAGCCTCATTTTTTTCCCGCTGCACCTCTCTGCTTCC
CCCTTTCTTACACCTTCTCGCACGGCCCAATCAGGTTGGTCTTTTCCTGC
TGATGACGTTGTACATGGTCTGGAAGGCCCCCACCGTGGAAGGCGTGCTG
GACGGATCCATGGACCCTACTGGCGTTGTGCTGAAGCCGAGAGTTGTGGA
GGTGAGAGCTCGGAGACGGTTTACGAGGGACTCACCATGCGGTCTCTCCA
ATATTTGCAGCTTGGTTGTTTGCGTGCGTTCGAGGGACTCATTTAGACGA
TAGGTACATGCGAGACGGACGTTTCCTCCTTCGTCGCCCAAGCTTGTTGC
GTCTCGGGTGGATAGGCCACCGACCACCGACGACCGGCCAATATCGAGCG
GCTTGTGGGGGGCGCTTTGCGTGAGTGTTCGTGAGACAGCAGTGCCTGAC
GGCAACCCTGGGTCAACGCCATGCCTTCGCGTCGTACGTGCTGGCTTCCC
TGAATAGAACAGGGTGGATTATTTCTTCATGGTTCCCTCGGTGTCTCTTT
TTGATTGTCCAGTCGATGGTTTCTACCTGACACGATTGACATAGCCTTGT
TTCCTCGCGCAGCCAGCTTTGGCGCAGAAATACCAAAATCCCGTGGTGGC
GTTGTTCCCACTCCTGATGACGGATCTCATGTTTCGCGGTTGTTGCGGAT
AAGAAGAGGGCGTGCGTGCACGAATTGAGCTGTGGTGTATCCTGCTGTCC
AGTTACACCCAGCAGGGACGACCAGCACAGCCGTAAACATGCCTCAATTA
CGTCGAAACACACACCACTATCTTCATCCGCTGCTCTTTTTGAGCGCCTC
GTTAAGCTCTGCTGTTTTTACACAACAAAATGATGGAACTCCTTTTCATG
AAATGCACAATCCGGCAAGAGGAACTGCGTTTTTCGTAGGCTGCAGCACC
ATGCATCACGGCAGCTCAAAACCCCGCCCCGTCTAAGCCTTTCGACTCCC
CACACATCGCTCTTGCTTGGTTCGTTGTTGCTCTATTCTCAGGTGGAGAT
GGTGGTCGGCAAGGCTCTTGCCACCGACGGCGACCCGGACTACGACTCGG
AGAACCCCCTCTACAACGGCGCCGCCACCATGATCCGACCGTACCCGCTC
CCCAAGTCCGCGAAGGCCGCAAAGGCGGCGGCCGTAATGGAGGAGGACGA
GGCTACCCTTGCCGCGGCTGCGGCGGCGGCGGCAGCGGCGGGCAGCGACA
CCGCCTCGAGCGACTATGAGGCCAAGGACGACCCGGAGATGCAGGACGAC
CTGAGCGTCATGCAGTCGGAGTACGCGGGCCCTGCCGACCTCGAGATGAT
CGTGGAGGAGAGCGAGGAGGACCGAACGTCTTCACGGTACGAGTCGGAGA
CGCGCTACTCGCACGCGCCGTCGTACTCCGACACGTACTCGGACTACGGT
GACCGCCCGGCGAGGCAACAGCACGCCTCGAGAAGCAACCACGCGGCCCC
CATCCGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15269:346..2305+

>mRNA_Ecto-sp13_S_contig15269.3962.1 ID=mRNA_Ecto-sp13_S_contig15269.3962.1|Name=mRNA_Ecto-sp13_S_contig15269.3962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15269:346..2305+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTTGTTTGATGAATGCTGGGGCGAGACTGCGGACGATGACGCGGCAGG
TCTTCAAACGTTCTGCCCCGTAAGGCCGTGGACTTTCACAGGGCCCGGCC
TGCCGATGATGTTGGGTCTTTTCCAGGTTGGTCTTTTCCTGCTGATGACG
TTGTACATGGTCTGGAAGGCCCCCACCGTGGAAGGCGTGCTGGACGGATC
CATGGACCCTACTGGCGTTGTGCTGAAGCCGAGAGTTGTGGAGGTGGAGA
TGGTGGTCGGCAAGGCTCTTGCCACCGACGGCGACCCGGACTACGACTCG
GAGAACCCCCTCTACAACGGCGCCGCCACCATGATCCGACCGTACCCGCT
CCCCAAGTCCGCGAAGGCCGCAAAGGCGGCGGCCGTAATGGAGGAGGACG
AGGCTACCCTTGCCGCGGCTGCGGCGGCGGCGGCAGCGGCGGGCAGCGAC
ACCGCCTCGAGCGACTATGAGGCCAAGGACGACCCGGAGATGCAGGACGA
CCTGAGCGTCATGCAGTCGGAGTACGCGGGCCCTGCCGACCTCGAGATGA
TCGTGGAGGAGAGCGAGGAGGACCGAACGTCTTCACGGTACGAGTCGGAG
ACGCGCTACTCGCACGCGCCGTCGTACTCCGACACGTACTCGGACTACGG
TGACCGCCCGGCGAGGCAACAGCACGCCTCGAGAAGCAACCACGCGGCCC
CCATCCGATAA
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