mRNA_Ecto-sp13_S_contig15268.3961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15268.3961.1
Unique NamemRNA_Ecto-sp13_S_contig15268.3961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15268.3961.1 vs. uniprot
Match: A0A6H5K507_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K507_9PHAE)

HSP 1 Score: 574 bits (1479), Expect = 1.720e-202
Identity = 311/357 (87.11%), Postives = 322/357 (90.20%), Query Frame = 1 
Query:    1 EDGAGGCGHRGGKVANEAAKGKGDATHVADDTAAAAAGLVRPAPGKNKMTAVTVQLPRPLEGDEASSTTPGGRDVGSVVGNGRGSNSLLSASDSGRLSLLEEARPTTSRVIAKLRASVAREACQSSATANPTTGATAPAGSACSLPLTVLEVHPGDAVIPGRRPPSSPGRRAGPHDGHKRSVGTRGRPRPQSAAGLSLAARTSRRTGVQHHGPAAAGGRTRENHRGLANAAATLGPAAAAITRRRAASCETDENMQGGNSRRPQSAGPGENIGDRRRREVKAQDNYSFFPSTSSAGANAGTECGYDEMGVRMILGGGVMLPGDVSEWEASLCSSTEAMSRAGYALDSPGTWREAVGF 1071
            EDGAGGC H GG+VAN++AKGKGDAT  AD TAAAAAGLV PAPG+N MTAV VQLPRPLEGDEASSTTPGGR VG  VGNGRGSNS+LSASDSGRLSLLEEARPTTSRVIAKLRASVAREACQ S  A    GATA AG AC LPLTVLEV PGDA IPGRRPPSSPGRRAGPHDGHKRSVGTRGRPRPQSAAGLSLAA+TSRR GVQHHG A+AGGRTREN RG  NAAATLGPAAAAITRR A +C+TDEN+QG NSRRPQSAGPGENIGDRRRR+VKAQDNYSFFPS SS G NAGTECGYDEMGVRMILGGGVMLPGDVSEWEASLCSSTEA SRAGYALDSPGTWREAVGF
Sbjct:  135 EDGAGGCCHGGGQVANKSAKGKGDATRAADATAAAAAGLVSPAPGRNNMTAVMVQLPRPLEGDEASSTTPGGRGVGFDVGNGRGSNSVLSASDSGRLSLLEEARPTTSRVIAKLRASVAREACQGSTAAKLAPGATAAAGPACLLPLTVLEVRPGDAAIPGRRPPSSPGRRAGPHDGHKRSVGTRGRPRPQSAAGLSLAAQTSRRIGVQHHGTASAGGRTRENRRGFVNAAATLGPAAAAITRRGATACKTDENVQGANSRRPQSAGPGENIGDRRRRDVKAQDNYSFFPSASSTGENAGTECGYDEMGVRMILGGGVMLPGDVSEWEASLCSSTEATSRAGYALDSPGTWREAVGF 491
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15268.3961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K507_9PHAE1.720e-20287.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15268contigEcto-sp13_S_contig15268:3133..4206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1074
Hectar predicted targeting categoryother localisation
Exons1
Cds size1074
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.8133335-CDS-Ecto-sp13_S_contig15268:3132..42061681462811.8133335-CDS-Ecto-sp13_S_contig15268:3132..4206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15268 3133..4206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15268.3961.1prot_Ecto-sp13_S_contig15268.3961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15268 3133..4206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15268.3961.1

>prot_Ecto-sp13_S_contig15268.3961.1 ID=prot_Ecto-sp13_S_contig15268.3961.1|Name=mRNA_Ecto-sp13_S_contig15268.3961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
EDGAGGCGHRGGKVANEAAKGKGDATHVADDTAAAAAGLVRPAPGKNKMT
AVTVQLPRPLEGDEASSTTPGGRDVGSVVGNGRGSNSLLSASDSGRLSLL
EEARPTTSRVIAKLRASVAREACQSSATANPTTGATAPAGSACSLPLTVL
EVHPGDAVIPGRRPPSSPGRRAGPHDGHKRSVGTRGRPRPQSAAGLSLAA
RTSRRTGVQHHGPAAAGGRTRENHRGLANAAATLGPAAAAITRRRAASCE
TDENMQGGNSRRPQSAGPGENIGDRRRREVKAQDNYSFFPSTSSAGANAG
TECGYDEMGVRMILGGGVMLPGDVSEWEASLCSSTEAMSRAGYALDSPGT
WREAVGF*
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mRNA from alignment at Ecto-sp13_S_contig15268:3133..4206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15268.3961.1 ID=mRNA_Ecto-sp13_S_contig15268.3961.1|Name=mRNA_Ecto-sp13_S_contig15268.3961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15268:3133..4206- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGATGGTGCTGGTGGGTGTGGTCACCGTGGCGGCAAGGTTGCGAACGA
AGCTGCCAAAGGCAAAGGCGACGCCACCCATGTCGCTGATGATACTGCAG
CTGCAGCTGCGGGTCTTGTGCGGCCGGCACCAGGCAAGAACAAGATGACG
GCTGTGACGGTGCAGCTCCCTCGCCCGCTTGAAGGAGACGAGGCGTCGTC
CACGACACCCGGTGGTCGCGATGTCGGCTCTGTTGTCGGGAACGGGCGCG
GCAGCAACAGCTTGCTCTCAGCCTCGGACAGCGGGCGGCTTTCCCTCCTC
GAAGAGGCAAGGCCCACCACGAGCCGAGTAATCGCGAAGCTCCGAGCCTC
GGTGGCACGGGAAGCGTGCCAGTCGTCGGCCACCGCGAATCCGACTACTG
GTGCAACAGCACCAGCAGGGTCAGCTTGTTCGCTCCCTCTGACGGTCCTC
GAGGTTCACCCGGGGGATGCGGTGATTCCAGGCAGGCGGCCCCCTTCTTC
TCCTGGGAGAAGAGCGGGACCACACGATGGGCACAAACGAAGCGTTGGGA
CGAGAGGACGGCCCCGACCGCAGTCGGCAGCAGGGTTGAGCCTAGCGGCA
CGAACGTCGCGTAGAACAGGAGTGCAGCACCATGGACCCGCCGCGGCAGG
TGGGAGAACGCGGGAGAATCATCGTGGTTTGGCGAATGCCGCAGCAACAC
TTGGACCGGCAGCAGCAGCGATAACTCGTCGAAGAGCTGCGTCGTGTGAG
ACTGACGAGAACATGCAAGGCGGCAACTCGCGACGGCCACAGTCTGCCGG
GCCTGGTGAAAATATCGGCGACCGACGAAGGCGCGAGGTGAAGGCGCAAG
ACAACTACTCATTTTTCCCTTCTACCTCCTCTGCTGGTGCGAATGCCGGT
ACCGAATGCGGTTACGACGAGATGGGCGTCAGAATGATTCTGGGAGGAGG
GGTGATGTTGCCAGGCGATGTGAGCGAGTGGGAAGCTTCTCTGTGCTCGA
GCACTGAGGCAATGAGCAGGGCTGGATATGCGTTGGACTCACCGGGAACG
TGGAGAGAAGCTGTTGGGTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15268:3133..4206-

>mRNA_Ecto-sp13_S_contig15268.3961.1 ID=mRNA_Ecto-sp13_S_contig15268.3961.1|Name=mRNA_Ecto-sp13_S_contig15268.3961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15268:3133..4206- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGATGGTGCTGGTGGGTGTGGTCACCGTGGCGGCAAGGTTGCGAACGA
AGCTGCCAAAGGCAAAGGCGACGCCACCCATGTCGCTGATGATACTGCAG
CTGCAGCTGCGGGTCTTGTGCGGCCGGCACCAGGCAAGAACAAGATGACG
GCTGTGACGGTGCAGCTCCCTCGCCCGCTTGAAGGAGACGAGGCGTCGTC
CACGACACCCGGTGGTCGCGATGTCGGCTCTGTTGTCGGGAACGGGCGCG
GCAGCAACAGCTTGCTCTCAGCCTCGGACAGCGGGCGGCTTTCCCTCCTC
GAAGAGGCAAGGCCCACCACGAGCCGAGTAATCGCGAAGCTCCGAGCCTC
GGTGGCACGGGAAGCGTGCCAGTCGTCGGCCACCGCGAATCCGACTACTG
GTGCAACAGCACCAGCAGGGTCAGCTTGTTCGCTCCCTCTGACGGTCCTC
GAGGTTCACCCGGGGGATGCGGTGATTCCAGGCAGGCGGCCCCCTTCTTC
TCCTGGGAGAAGAGCGGGACCACACGATGGGCACAAACGAAGCGTTGGGA
CGAGAGGACGGCCCCGACCGCAGTCGGCAGCAGGGTTGAGCCTAGCGGCA
CGAACGTCGCGTAGAACAGGAGTGCAGCACCATGGACCCGCCGCGGCAGG
TGGGAGAACGCGGGAGAATCATCGTGGTTTGGCGAATGCCGCAGCAACAC
TTGGACCGGCAGCAGCAGCGATAACTCGTCGAAGAGCTGCGTCGTGTGAG
ACTGACGAGAACATGCAAGGCGGCAACTCGCGACGGCCACAGTCTGCCGG
GCCTGGTGAAAATATCGGCGACCGACGAAGGCGCGAGGTGAAGGCGCAAG
ACAACTACTCATTTTTCCCTTCTACCTCCTCTGCTGGTGCGAATGCCGGT
ACCGAATGCGGTTACGACGAGATGGGCGTCAGAATGATTCTGGGAGGAGG
GGTGATGTTGCCAGGCGATGTGAGCGAGTGGGAAGCTTCTCTGTGCTCGA
GCACTGAGGCAATGAGCAGGGCTGGATATGCGTTGGACTCACCGGGAACG
TGGAGAGAAGCTGTTGGGTTCTAG
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