prot_Ecto-sp13_S_contig15267.3960.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15267.3960.1
Unique Nameprot_Ecto-sp13_S_contig15267.3960.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length269
Homology
BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: D7FNZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ4_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 3.130e-141
Identity = 230/268 (85.82%), Postives = 238/268 (88.81%), Query Frame = 0
Query:    1 MDAVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGFGSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPASPAKDPVCAIMGMVQEEEV 268
            MDAVILKAS ALAHPVGRCLTF+ VSIGAV LIFLT IA TGQGYKIAAIAY+VVTV+RILLIV+CSRSMINIIDGSMARDIASQ+AQ A  G SV  GDSTS KKIKADPKL AAKRTILSALFFCITLTS+ASA LIFAL TEYG DNPIVFLALPLAYGPLIALSFHVQLHSKRNK LL RV VQNPIAT  E  GFGSGDGFKK S SVGTTTSAKS RNNTTGGRVVP QGTAEE G+GGQ PASPAKDPVC I+GMVQEEEV
Sbjct:  145 MDAVILKASAALAHPVGRCLTFSSVSIGAVFLIFLTFIAWTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMARDIASQKAQGAQRGRSVLSGDSTSFKKIKADPKLAAAKRTILSALFFCITLTSIASAFLIFALTTEYGTDNPIVFLALPLAYGPLIALSFHVQLHSKRNKALLRRVPVQNPIATKGEVIGFGSGDGFKKASGSVGTTTSAKSGRNNTTGGRVVPTQGTAEEGGEGGQTPASPAKDPVCEIIGMVQEEEV 412          
BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: A0A6H5KF70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF70_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.220e-138
Identity = 224/260 (86.15%), Postives = 238/260 (91.54%), Query Frame = 0
Query:    8 ASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGFGSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPASPAKDPVCAIMGMVQEEE 267
            AS ALAHPVGRCLTF  VSIGAV LIFLTLIASTGQGYKIAAIAY+VVTV+RILLIV+CSRSMINIIDGSM RDIASQRAQDAHSGGSV GGDSTS KKIKADPKL AAKRTILSALFFCITLTS+ASAVLIFAL TEYGN+NPIVFLALPLA+GPLIALSFHVQLHSKRNKVLL RV+VQN IAT  + SGF SGDGF+K SRSVGTT +AKS RNNT+GG VVP QG AE+ G+GGQQPASPAKDPVCAIMGMVQEE+
Sbjct:  149 ASAALAHPVGRCLTFFSVSIGAVFLIFLTLIASTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMERDIASQRAQDAHSGGSVLGGDSTSAKKIKADPKLAAAKRTILSALFFCITLTSIASAVLIFALTTEYGNNNPIVFLALPLAFGPLIALSFHVQLHSKRNKVLLRRVYVQNSIATNGKVSGFVSGDGFEKASRSVGTTFTAKSGRNNTSGGVVVPTQGIAEKGGRGGQQPASPAKDPVCAIMGMVQEEK 408          
BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: D7FNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ3_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.130e-59
Identity = 115/177 (64.97%), Postives = 136/177 (76.84%), Query Frame = 0
Query:    3 AVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNK 179
            A +LK S AL HPVGR  +F+ VSIGAV LI+LTL+A TGQGYK+AAI+YV+V  + IL+ V+CSRSMI IID S+A+D A QRA    +  S     S   + +  DPKL  AK+TI+SA+FFCITLT +AS VLIFAL TEYG DNPIVFLA PLA+GPLIALSFHVQLHSKRNK
Sbjct:  144 ATVLKVSAALTHPVGRYTSFSAVSIGAVCLIWLTLMARTGQGYKVAAISYVLVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQTTSSACSAGSGHNRTMTVDPKLAGAKKTIISAMFFCITLTGIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNK 320          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNZ4_ECTSI3.130e-14185.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF70_9PHAE2.220e-13886.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNZ3_ECTSI4.130e-5964.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 263..268
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 172..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 141..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 66..119
NoneNo IPR availableTMHMMTMhelixcoord: 152..171
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 47..66
NoneNo IPR availableTMHMMTMhelixcoord: 120..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15267contigEcto-sp13_S_contig15267:424..1230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15267.3960.1mRNA_Ecto-sp13_S_contig15267.3960.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15267 394..1230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15267.3960.1 ID=prot_Ecto-sp13_S_contig15267.3960.1|Name=mRNA_Ecto-sp13_S_contig15267.3960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MDAVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAI
AYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGD
STSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDN
PIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGF
GSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPAS
PAKDPVCAIMGMVQEEEV*
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