mRNA_Ecto-sp13_S_contig15267.3960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15267.3960.1
Unique NamemRNA_Ecto-sp13_S_contig15267.3960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: D7FNZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ4_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 1.940e-147
Identity = 239/278 (85.97%), Postives = 247/278 (88.85%), Query Frame = 1 
Query:    1 ITSVDPRLLKMDAVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGFGSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPASPAKDPVCAIMGMVQEEEV 834
            I SVDPRLLKMDAVILKAS ALAHPVGRCLTF+ VSIGAV LIFLT IA TGQGYKIAAIAY+VVTV+RILLIV+CSRSMINIIDGSMARDIASQ+AQ A  G SV  GDSTS KKIKADPKL AAKRTILSALFFCITLTS+ASA LIFAL TEYG DNPIVFLALPLAYGPLIALSFHVQLHSKRNK LL RV VQNPIAT  E  GFGSGDGFKK S SVGTTTSAKS RNNTTGGRVVP QGTAEE G+GGQ PASPAKDPVC I+GMVQEEEV
Sbjct:  135 IRSVDPRLLKMDAVILKASAALAHPVGRCLTFSSVSIGAVFLIFLTFIAWTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMARDIASQKAQGAQRGRSVLSGDSTSFKKIKADPKLAAAKRTILSALFFCITLTSIASAFLIFALTTEYGTDNPIVFLALPLAYGPLIALSFHVQLHSKRNKALLRRVPVQNPIATKGEVIGFGSGDGFKKASGSVGTTTSAKSGRNNTTGGRVVPTQGTAEEGGEGGQTPASPAKDPVCEIIGMVQEEEV 412
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BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: A0A6H5KF70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF70_9PHAE)

HSP 1 Score: 406 bits (1044), Expect = 1.630e-138
Identity = 224/260 (86.15%), Postives = 238/260 (91.54%), Query Frame = 1 
Query:   52 ASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGFGSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPASPAKDPVCAIMGMVQEEE 831
            AS ALAHPVGRCLTF  VSIGAV LIFLTLIASTGQGYKIAAIAY+VVTV+RILLIV+CSRSMINIIDGSM RDIASQRAQDAHSGGSV GGDSTS KKIKADPKL AAKRTILSALFFCITLTS+ASAVLIFAL TEYGN+NPIVFLALPLA+GPLIALSFHVQLHSKRNKVLL RV+VQN IAT  + SGF SGDGF+K SRSVGTT +AKS RNNT+GG VVP QG AE+ G+GGQQPASPAKDPVCAIMGMVQEE+
Sbjct:  149 ASAALAHPVGRCLTFFSVSIGAVFLIFLTLIASTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMERDIASQRAQDAHSGGSVLGGDSTSAKKIKADPKLAAAKRTILSALFFCITLTSIASAVLIFALTTEYGNNNPIVFLALPLAFGPLIALSFHVQLHSKRNKVLLRRVYVQNSIATNGKVSGFVSGDGFEKASRSVGTTFTAKSGRNNTSGGVVVPTQGIAEKGGRGGQQPASPAKDPVCAIMGMVQEEK 408
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BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Match: D7FNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ3_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.790e-64
Identity = 123/189 (65.08%), Postives = 144/189 (76.19%), Query Frame = 1 
Query:    1 ITSVDPRLLKMDAVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAIAYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGDSTSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDNPIVFLALPLAYGPLIALSFHVQLHSKRNK 567
            I S DPRLLK  A +LK S AL HPVGR  +F+ VSIGAV LI+LTL+A TGQGYK+AAI+YV+V  + IL+ V+CSRSMI IID S+A+D A QRA    +  S     S   + +  DPKL  AK+TI+SA+FFCITLT +AS VLIFAL TEYG DNPIVFLA PLA+GPLIALSFHVQLHSKRNK
Sbjct:  132 IRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLIWLTLMARTGQGYKVAAISYVLVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQTTSSACSAGSGHNRTMTVDPKLAGAKKTIISAMFFCITLTGIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNK 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15267.3960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNZ4_ECTSI1.940e-14785.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF70_9PHAE1.630e-13886.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNZ3_ECTSI1.790e-6465.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15267contigEcto-sp13_S_contig15267:394..1230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categorysignal anchor
Exons1
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.7680948-UTR-Ecto-sp13_S_contig15267:393..4231681462811.7680948-UTR-Ecto-sp13_S_contig15267:393..423Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15267 394..423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.7788339-CDS-Ecto-sp13_S_contig15267:423..12301681462811.7788339-CDS-Ecto-sp13_S_contig15267:423..1230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15267 424..1230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15267.3960.1prot_Ecto-sp13_S_contig15267.3960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15267 424..1230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15267.3960.1

>prot_Ecto-sp13_S_contig15267.3960.1 ID=prot_Ecto-sp13_S_contig15267.3960.1|Name=mRNA_Ecto-sp13_S_contig15267.3960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MDAVILKASTALAHPVGRCLTFTGVSIGAVVLIFLTLIASTGQGYKIAAI
AYVVVTVVRILLIVLCSRSMINIIDGSMARDIASQRAQDAHSGGSVSGGD
STSPKKIKADPKLVAAKRTILSALFFCITLTSVASAVLIFALATEYGNDN
PIVFLALPLAYGPLIALSFHVQLHSKRNKVLLGRVHVQNPIATTRENSGF
GSGDGFKKVSRSVGTTTSAKSARNNTTGGRVVPIQGTAEEEGKGGQQPAS
PAKDPVCAIMGMVQEEEV*
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mRNA from alignment at Ecto-sp13_S_contig15267:394..1230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15267.3960.1 ID=mRNA_Ecto-sp13_S_contig15267.3960.1|Name=mRNA_Ecto-sp13_S_contig15267.3960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15267:394..1230+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAACCAGCGTTGATCCGCGACTCCTGAAGATGGACGCCGTCATCCTCAA
AGCGTCGACCGCCCTGGCGCACCCGGTGGGGCGGTGCCTTACCTTCACCG
GCGTGTCCATCGGGGCAGTAGTCTTGATTTTCCTGACATTGATCGCGTCG
ACAGGGCAGGGCTACAAGATTGCCGCCATCGCGTACGTAGTTGTTACCGT
TGTACGCATCCTGCTCATTGTCTTGTGCAGCCGTTCAATGATCAACATTA
TTGACGGCTCGATGGCGCGTGATATCGCCAGTCAAAGGGCGCAGGACGCT
CACAGCGGCGGCAGTGTCTCGGGCGGCGACAGTACTAGCCCGAAAAAGAT
AAAGGCTGACCCTAAGCTTGTGGCGGCGAAGAGAACGATCCTGTCGGCGC
TGTTCTTCTGCATCACCCTGACGAGCGTCGCTTCAGCTGTCCTCATCTTC
GCGCTCGCGACAGAGTATGGAAACGATAACCCGATCGTGTTCCTGGCTTT
GCCGTTGGCGTACGGCCCCCTGATCGCGCTGTCGTTTCACGTACAGCTGC
ACTCGAAGAGAAACAAGGTGCTCCTGGGGCGGGTTCATGTGCAGAACCCT
ATCGCCACTACACGAGAAAATAGTGGCTTCGGCAGTGGTGATGGGTTCAA
GAAAGTCTCCAGATCCGTGGGAACCACCACCAGCGCCAAGTCCGCCCGGA
ACAACACAACAGGCGGTCGTGTCGTGCCGATCCAGGGTACAGCAGAAGAA
GAGGGAAAAGGAGGGCAACAGCCGGCCTCTCCGGCCAAAGATCCAGTTTG
CGCAATAATGGGCATGGTGCAGGAGGAGGAGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15267:394..1230+

>mRNA_Ecto-sp13_S_contig15267.3960.1 ID=mRNA_Ecto-sp13_S_contig15267.3960.1|Name=mRNA_Ecto-sp13_S_contig15267.3960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15267:394..1230+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCGTCATCCTCAAAGCGTCGACCGCCCTGGCGCACCCGGTGGG
GCGGTGCCTTACCTTCACCGGCGTGTCCATCGGGGCAGTAGTCTTGATTT
TCCTGACATTGATCGCGTCGACAGGGCAGGGCTACAAGATTGCCGCCATC
GCGTACGTAGTTGTTACCGTTGTACGCATCCTGCTCATTGTCTTGTGCAG
CCGTTCAATGATCAACATTATTGACGGCTCGATGGCGCGTGATATCGCCA
GTCAAAGGGCGCAGGACGCTCACAGCGGCGGCAGTGTCTCGGGCGGCGAC
AGTACTAGCCCGAAAAAGATAAAGGCTGACCCTAAGCTTGTGGCGGCGAA
GAGAACGATCCTGTCGGCGCTGTTCTTCTGCATCACCCTGACGAGCGTCG
CTTCAGCTGTCCTCATCTTCGCGCTCGCGACAGAGTATGGAAACGATAAC
CCGATCGTGTTCCTGGCTTTGCCGTTGGCGTACGGCCCCCTGATCGCGCT
GTCGTTTCACGTACAGCTGCACTCGAAGAGAAACAAGGTGCTCCTGGGGC
GGGTTCATGTGCAGAACCCTATCGCCACTACACGAGAAAATAGTGGCTTC
GGCAGTGGTGATGGGTTCAAGAAAGTCTCCAGATCCGTGGGAACCACCAC
CAGCGCCAAGTCCGCCCGGAACAACACAACAGGCGGTCGTGTCGTGCCGA
TCCAGGGTACAGCAGAAGAAGAGGGAAAAGGAGGGCAACAGCCGGCCTCT
CCGGCCAAAGATCCAGTTTGCGCAATAATGGGCATGGTGCAGGAGGAGGA
GGTATAG
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