mRNA_Ecto-sp13_S_contig15264.3959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15264.3959.1
Unique NamemRNA_Ecto-sp13_S_contig15264.3959.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15264.3959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15264contigEcto-sp13_S_contig15264:1546..1979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size434
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.7305193-UTR-Ecto-sp13_S_contig15264:1545..15501681462811.7305193-UTR-Ecto-sp13_S_contig15264:1545..1550Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15264 1546..1550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.7405553-CDS-Ecto-sp13_S_contig15264:1550..19791681462811.7405553-CDS-Ecto-sp13_S_contig15264:1550..1979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15264 1551..1979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15264.3959.1prot_Ecto-sp13_S_contig15264.3959.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15264 1551..1979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15264.3959.1

>prot_Ecto-sp13_S_contig15264.3959.1 ID=prot_Ecto-sp13_S_contig15264.3959.1|Name=mRNA_Ecto-sp13_S_contig15264.3959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MVTAGHRSSHHVKSDVKTLATGSTATSSCADRITHAAVHNTTTPDSRASL
DPCDGLKRDSNRKRILCLPRTRGHEASQQADSAEYGQSSDASRDPLVRSS
TTTAHGSKRHQQQQLQKQQENKQRQPKKDDSKKQTPKNHHQQE
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mRNA from alignment at Ecto-sp13_S_contig15264:1546..1979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15264.3959.1 ID=mRNA_Ecto-sp13_S_contig15264.3959.1|Name=mRNA_Ecto-sp13_S_contig15264.3959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15264:1546..1979+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATATGGTCACAGCGGGGCATCGTTCCAGCCATCATGTGAAGAGCGAT
GTCAAGACCTTAGCAACTGGCTCTACAGCCACGTCTTCGTGTGCCGACCG
GATCACCCATGCCGCCGTGCACAACACCACGACACCAGACAGTAGGGCGT
CACTGGATCCTTGTGATGGTCTCAAGCGAGACTCCAACCGGAAGAGAATT
CTGTGCTTGCCCAGAACTCGGGGACATGAGGCTTCTCAGCAGGCCGACAG
CGCTGAGTACGGCCAATCGTCGGATGCCAGCAGAGATCCCCTCGTACGGT
CGTCGACGACAACGGCGCATGGATCCAAGCGACATCAGCAGCAGCAGCTT
CAGAAACAGCAGGAAAATAAACAGCGACAGCCGAAAAAAGATGACTCAAA
GAAACAAACACCAAAGAATCATCATCAGCAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15264:1546..1979+

>mRNA_Ecto-sp13_S_contig15264.3959.1 ID=mRNA_Ecto-sp13_S_contig15264.3959.1|Name=mRNA_Ecto-sp13_S_contig15264.3959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15264:1546..1979+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCACAGCGGGGCATCGTTCCAGCCATCATGTGAAGAGCGATGTCAA
GACCTTAGCAACTGGCTCTACAGCCACGTCTTCGTGTGCCGACCGGATCA
CCCATGCCGCCGTGCACAACACCACGACACCAGACAGTAGGGCGTCACTG
GATCCTTGTGATGGTCTCAAGCGAGACTCCAACCGGAAGAGAATTCTGTG
CTTGCCCAGAACTCGGGGACATGAGGCTTCTCAGCAGGCCGACAGCGCTG
AGTACGGCCAATCGTCGGATGCCAGCAGAGATCCCCTCGTACGGTCGTCG
ACGACAACGGCGCATGGATCCAAGCGACATCAGCAGCAGCAGCTTCAGAA
ACAGCAGGAAAATAAACAGCGACAGCCGAAAAAAGATGACTCAAAGAAAC
AAACACCAAAGAATCATCATCAGCAGGAG
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