mRNA_Ecto-sp13_S_contig15263.3958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: D8LI12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI12_ECTSI) HSP 1 Score: 181 bits (458), Expect = 4.250e-56 Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 1
Query: 1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGIAR 294
LREITTGLKEIRVSPWNLNLLAKLVRGLPV EA+AQLLFCKKKHTTTVAKAIQNALNLADMR+GLAAEELEVGEIFVTKGK+VKR+RIMGRGRAGIAR
Sbjct: 43 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIAR 140
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A6H5KPA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA6_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.120e-55 Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1
Query: 1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGIAR 294
LREITTGLKEIRVSPWNLNLLAKLVRGLPV EA+AQLLFCKKKHTTTVAKAIQNALNLADMR+GLAAEELEVGEIFVTKGKMVKR+RIMGRGRAGIAR
Sbjct: 142 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKMVKRLRIMGRGRAGIAR 239
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A024G8V2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8V2_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.130e-24 Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
R + T K+IRVSP L LA+ VRGLP EA Q+ F +K+ T V +QNA+NLAD+R+ + E L++ E FVTKGK +KR+RIMGRGR+GI
Sbjct: 62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRATIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGI 156
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A1V9ZLD6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLD6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 6.320e-24 Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
R + T KEIRVSP L+LLA+ +RGLPV EA Q+ F K+ V K +QNA+NLAD+ +G+ L+V E FV KG +KR++IMGRGRAGI
Sbjct: 47 RTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAAIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGI 141
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: F0WBS2_9STRA (Uncharacterized protein AlNc14C53G4113 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBS2_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 8.060e-24 Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
R + T K+IRVSP L LA+ VRGLPV EA Q+ F +K+ V +QNA+NLAD+R+ + E L+V E FVTKGK +KR+RIMGRGR+GI
Sbjct: 61 RTVKTIKKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRAGIVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGI 155
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A8J9SQV9_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SQV9_PHATR) HSP 1 Score: 94.0 bits (232), Expect = 8.470e-23 Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAG 285
K IR SPW LNL+ +L GLP+ EA QL FCKK V + ++ NLA +RHGL +LEV E F TKG +KRIRIMGRGR+G
Sbjct: 12 KNIRHSPWRLNLVCQLAAGLPLQEALTQLEFCKKGKAPLVQEVLKRTSNLASIRHGLQISQLEVAECFATKGVPLKRIRIMGRGRSG 98
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A1V9Z481_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z481_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.490e-22 Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
R + T KEIRVSP L LLA+ +RGLP EA Q+ + K+ V K +QNA+NLAD+ +G+ L++ E FV KG +KR++IMGRGRAGI
Sbjct: 47 RTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKAAIVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGI 141
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A7R9ZLM4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLM4_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.160e-20 Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
KEIR SPW LN + +L GL + EA QL FC K+ VAK ++ NLAD+R GL +LEV E F TKG M+KRI+IMGRGR GI
Sbjct: 172 KEIRQSPWKLNRVCQLAAGLTLEEALTQLRFCDIKNADLVAKILKRTSNLADIRDGLQMSQLEVAECFTTKGMMLKRIKIMGRGRNGI 259
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: K8YXM3_NANGC (Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXM3_NANGC) HSP 1 Score: 90.1 bits (222), Expect = 4.610e-20 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKK-KHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
+RE+ + IR+SPW +NLL + VRGLPV EA QL F +K K VAK IQNA NLA++RH L E+L V E FV + + K I MG+GR G+
Sbjct: 74 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGL 170
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A6U3UCW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UCW5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 7.800e-20 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAG 285
K IR SPW +NL+ + GL V EA QL+FC+K VAK I+ NLAD+R G +LEV E F T G +KR++IMGRGR+G
Sbjct: 9 KNIRHSPWRMNLVCQFAHGLTVPEALKQLMFCQKVKAPLVAKVIRRTANLADIRDGFQPSQLEVSECFTTHGTHLKRLKIMGRGRSG 95 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15263.3958.1 >prot_Ecto-sp13_S_contig15263.3958.1 ID=prot_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKback to top mRNA from alignment at Ecto-sp13_S_contig15263:2663..3741+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15263.3958.1 ID=mRNA_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15263:2663..3741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15263:2663..3741+ >mRNA_Ecto-sp13_S_contig15263.3958.1 ID=mRNA_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15263:2663..3741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |