mRNA_Ecto-sp13_S_contig15263.3958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15263.3958.1
Unique NamemRNA_Ecto-sp13_S_contig15263.3958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: D8LI12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI12_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 4.250e-56
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGIAR 294
            LREITTGLKEIRVSPWNLNLLAKLVRGLPV EA+AQLLFCKKKHTTTVAKAIQNALNLADMR+GLAAEELEVGEIFVTKGK+VKR+RIMGRGRAGIAR
Sbjct:   43 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIAR 140          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A6H5KPA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA6_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.120e-55
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGIAR 294
            LREITTGLKEIRVSPWNLNLLAKLVRGLPV EA+AQLLFCKKKHTTTVAKAIQNALNLADMR+GLAAEELEVGEIFVTKGKMVKR+RIMGRGRAGIAR
Sbjct:  142 LREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKMVKRLRIMGRGRAGIAR 239          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A024G8V2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8V2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 4.130e-24
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            R + T  K+IRVSP  L  LA+ VRGLP  EA  Q+ F +K+  T V   +QNA+NLAD+R+ +  E L++ E FVTKGK +KR+RIMGRGR+GI
Sbjct:   62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRATIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGI 156          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A1V9ZLD6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLD6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.320e-24
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            R + T  KEIRVSP  L+LLA+ +RGLPV EA  Q+ F  K+    V K +QNA+NLAD+ +G+    L+V E FV KG  +KR++IMGRGRAGI
Sbjct:   47 RTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAAIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGI 141          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: F0WBS2_9STRA (Uncharacterized protein AlNc14C53G4113 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBS2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.060e-24
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            R + T  K+IRVSP  L  LA+ VRGLPV EA  Q+ F +K+    V   +QNA+NLAD+R+ +  E L+V E FVTKGK +KR+RIMGRGR+GI
Sbjct:   61 RTVKTIKKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRAGIVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGI 155          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A8J9SQV9_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SQV9_PHATR)

HSP 1 Score: 94.0 bits (232), Expect = 8.470e-23
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAG 285
            K IR SPW LNL+ +L  GLP+ EA  QL FCKK     V + ++   NLA +RHGL   +LEV E F TKG  +KRIRIMGRGR+G
Sbjct:   12 KNIRHSPWRLNLVCQLAAGLPLQEALTQLEFCKKGKAPLVQEVLKRTSNLASIRHGLQISQLEVAECFATKGVPLKRIRIMGRGRSG 98          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A1V9Z481_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z481_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.490e-22
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    4 REITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            R + T  KEIRVSP  L LLA+ +RGLP  EA  Q+ +  K+    V K +QNA+NLAD+ +G+    L++ E FV KG  +KR++IMGRGRAGI
Sbjct:   47 RTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKAAIVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGI 141          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A7R9ZLM4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLM4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.160e-20
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            KEIR SPW LN + +L  GL + EA  QL FC  K+   VAK ++   NLAD+R GL   +LEV E F TKG M+KRI+IMGRGR GI
Sbjct:  172 KEIRQSPWKLNRVCQLAAGLTLEEALTQLRFCDIKNADLVAKILKRTSNLADIRDGLQMSQLEVAECFTTKGMMLKRIKIMGRGRNGI 259          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: K8YXM3_NANGC (Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXM3_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 4.610e-20
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKK-KHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGI 288
            +RE+ +    IR+SPW +NLL + VRGLPV EA  QL F +K K    VAK IQNA NLA++RH L  E+L V E FV +  + K I  MG+GR G+
Sbjct:   74 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGL 170          
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Match: A0A6U3UCW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UCW5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.800e-20
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   25 KEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAKAIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAG 285
            K IR SPW +NL+ +   GL V EA  QL+FC+K     VAK I+   NLAD+R G    +LEV E F T G  +KR++IMGRGR+G
Sbjct:    9 KNIRHSPWRMNLVCQFAHGLTVPEALKQLMFCQKVKAPLVAKVIRRTANLADIRDGFQPSQLEVSECFTTHGTHLKRLKIMGRGRSG 95          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15263.3958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI12_ECTSI4.250e-5694.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPA6_9PHAE2.120e-5595.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024G8V2_9STRA4.130e-2453.68Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1V9ZLD6_9STRA6.320e-2453.68Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
F0WBS2_9STRA8.060e-2454.74Uncharacterized protein AlNc14C53G4113 n=1 Tax=Alb... [more]
A0A8J9SQV9_PHATR8.470e-2355.17Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1V9Z481_9STRA1.490e-2250.53Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7R9ZLM4_9STRA1.160e-2055.68Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
K8YXM3_NANGC4.610e-2050.52Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxI... [more]
A0A6U3UCW5_9STRA7.800e-2050.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15263contigEcto-sp13_S_contig15263:2663..3741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score181.8
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D8LI12
Model size309
KEGG koko:K02890
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0091@1,KOG1711@2759
Cds size309
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.6730964-CDS-Ecto-sp13_S_contig15263:2662..28211681462811.6730964-CDS-Ecto-sp13_S_contig15263:2662..2821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15263 2663..2821 +
1681462811.692092-CDS-Ecto-sp13_S_contig15263:3591..37411681462811.692092-CDS-Ecto-sp13_S_contig15263:3591..3741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15263 3592..3741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15263.3958.1prot_Ecto-sp13_S_contig15263.3958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15263 2663..3741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15263.3958.1

>prot_Ecto-sp13_S_contig15263.3958.1 ID=prot_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
LREITTGLKEIRVSPWNLNLLAKLVRGLPVAEASAQLLFCKKKHTTTVAK
AIQNALNLADMRHGLAAEELEVGEIFVTKGKMVKRIRIMGRGRAGIARCV
GR*
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mRNA from alignment at Ecto-sp13_S_contig15263:2663..3741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15263.3958.1 ID=mRNA_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15263:2663..3741+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAGGGAGATCACGACGGGGCTGAAGGAGATCAGGGTCAGCCCCTGGAA CCTGAACCTCCTGGCGAAGCTCGTGAGAGGCCTTCCGGTCGCGGAGGCGA GCGCGCAGCTTCTCTTCTGCAAGAAGAAGCACACAACCACCGTCGCGAAA GCCATCCAGGTACTGTATGTACTTAGAGTAAGGCAGGTGGGTGGCGCTCT CTCCCTCTCGCTCTCGCTGGTCGTGAGATGATTGATGGCAATCATCCTCC TCTCTGTAAATGGGTAGATCCCATCGCGGGGTTCGAAGTGAACCGAGAGC AGGAGAGACGCAAAGCCCATCCCCTCTTTTTTGCTTTCTTGCTGATTTCC CTTGGAAAAGGTCTGTACTCGACAACGGATGCGCGCACCCTCGTTTTGTT GTGTTGTTGCTCCCTGTGGAACAAGTCTGCAACGACGATATTCCGGGGAA GGAGTGCAAGGGATGAAGGGGACATCGGGGACCAAACTCTCCGCCGTTCA TCCGGAGCCCTTTTCTGTCCTCCTCGTCCATGTGATGCCAGCGGCAGTAA CATAAAACAGGAACCAACCGCAAGCCGTGTGCGCCCAGCCCCTCCGGAAC ACACCCCACTTCAAGTACTTCGGCGGTACCTCTGTTTTCGTGGGTATAAT GCTGTACTTTACCCCCCCCCTCCATCTAACAGTAGTACGACAACTCACCA ACAGCCTATAATATTGCTACAGCAGCAGTCCATCCCGGACTCTTGATCTG TGGAAGAGATGAATTTTCGAGTGTTTCTAACAAAAGCAAATACTCCCCAA ATATACAAATAAAGCAATCGCGTGTGCGCACGCATTACTCCCCCACCCCA CCCACCGTTGCACCATCTCACTTCCACCCTCGTTCCCAACCCCCCCCCAA AAAAAAAAATGCCTATATTAAAAAAAAAGAACGCCCTTAACCTGGCCGAC ATGAGGCACGGGCTAGCCGCAGAAGAATTGGAGGTGGGCGAGATCTTCGT CACGAAGGGGAAGATGGTGAAGCGTATCCGGATCATGGGCAGAGGCCGCG CAGGGATCGCGAGGTGCGTCGGTCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15263:2663..3741+

>mRNA_Ecto-sp13_S_contig15263.3958.1 ID=mRNA_Ecto-sp13_S_contig15263.3958.1|Name=mRNA_Ecto-sp13_S_contig15263.3958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15263:2663..3741+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAGGGAGATCACGACGGGGCTGAAGGAGATCAGGGTCAGCCCCTGGAA
CCTGAACCTCCTGGCGAAGCTCGTGAGAGGCCTTCCGGTCGCGGAGGCGA
GCGCGCAGCTTCTCTTCTGCAAGAAGAAGCACACAACCACCGTCGCGAAA
GCCATCCAGAACGCCCTTAACCTGGCCGACATGAGGCACGGGCTAGCCGC
AGAAGAATTGGAGGTGGGCGAGATCTTCGTCACGAAGGGGAAGATGGTGA
AGCGTATCCGGATCATGGGCAGAGGCCGCGCAGGGATCGCGAGGTGCGTC
GGTCGGTAA
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