prot_Ecto-sp13_S_contig15262.3957.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig15262.3957.1
Unique Name	prot_Ecto-sp13_S_contig15262.3957.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	409

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: D7FK76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK76_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 4.680e-35
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0

Query:  309 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVRAK 409
            MPTAV+GSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH XXXXXXXXXXXXXXXXXXXXXXX   GTVRAK
Sbjct:    1 MPTAVVGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHRXXXXXXXXXXXXXXXXXXXXXXXSTGGTVRAK 101

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BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: A0A6H5KCR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.470e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query:  309 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 376
            MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH
Sbjct:    1 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 68

[Close]

BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.010e-20
Identity = 91/111 (81.98%), Postives = 93/111 (83.78%), Query Frame = 0

Query:  186 DGEDVEMEDAKDAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXLALLVNKWTHAGVACRWLLQHLLTSEQSHALVAAXXXXXXXXXXXXGALPGQGGVCSDRGRVAGNRNDK 296
            DGEDVEMEDA D AGD XXXXXXXXXXXXXXXXXXX      LALLVNKWTHAGVACRWLLQHLLTSEQS ALV  XXXXXXXXXXX  A PGQGGVC DRGRV GNR ++
Sbjct: 3790 DGEDVEMEDANDVAGDAXXXXXXXXXXXXXXXXXXXECRRKRLALLVNKWTHAGVACRWLLQHLLTSEQSQALVXXXXXXXXXXXXX--APPGQGGVCWDRGRVGGNRREQ 3898

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FK76_ECTSI	4.680e-35	95.05	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KCR7_9PHAE	5.470e-33	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FK75_ECTSI	1.010e-20	81.98	Ubiquitin domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037794	Transcription initiation factor TFIID subunit 12	PANTHER	PTHR12264	FAMILY NOT NAMED	coord: 63..158
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 247..257
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 258..278
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 279..409
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..227
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 228..246
None	No IPR available	SUPERFAMILY	81995	beta-sandwich domain of Sec23/24	coord: 63..113

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15262	contig	Ecto-sp13_S_contig15262:545..3116 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15262.3957.1	mRNA_Ecto-sp13_S_contig15262.3957.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig15262 540..3116 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig15262.3957.1 ID=prot_Ecto-sp13_S_contig15262.3957.1|Name=mRNA_Ecto-sp13_S_contig15262.3957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
MGSGGKRARGEGVARVPAVGGGSGGGGVDGSEPAVTATGAAAPAEAQVGG
EEEGSVERGLRGQQQPQQQPQQQPQPQQQLQQQQQPQQQQQQQQQRQQQQ
QPVAATAAAPPPPAAASAAAAAAAGAKVAGDGDDHDCGAVPPEGGNSNRS
APGKGKSSFSVSVTVGGDKGGGRGRGRRRRASAREDGEDVEMEDAKDAAG
DAAEAEAEARLGEEKEQQRRRDRRRKRLALLVNKWTHAGVACRWLLQHLL
TSEQSHALVAAAAAAAAAAAAAAGALPGQGGVCSDRGRVAGNRNDKGRSR
PSTASVLAMPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAES
ILQETAKRVTRMTQIHIHRRNDYELHRHENEGNGSPTTATAAAAGGGGGT
GTGGTVRAK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR037794	TAF12