mRNA_Ecto-sp13_S_contig15262.3957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15262.3957.1
Unique NamemRNA_Ecto-sp13_S_contig15262.3957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: D7FK76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK76_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 4.770e-35
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 3 
Query:  930 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVRAK 1232
            MPTAV+GSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH XXXXXXXXXXXXXXXXXXXXXXX   GTVRAK
Sbjct:    1 MPTAVVGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELHRXXXXXXXXXXXXXXXXXXXXXXXSTGGTVRAK 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: A0A6H5KCR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.580e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 3 
Query:  930 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 1133
            MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH
Sbjct:    1 MPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAESILQETAKRVTRMTQIHIHRRNDYELH 68
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.020e-20
Identity = 91/111 (81.98%), Postives = 93/111 (83.78%), Query Frame = 3 
Query:  561 DGEDVEMEDAKDAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXLALLVNKWTHAGVACRWLLQHLLTSEQSHALVAAXXXXXXXXXXXXGALPGQGGVCSDRGRVAGNRNDK 893
            DGEDVEMEDA D AGD XXXXXXXXXXXXXXXXXXX      LALLVNKWTHAGVACRWLLQHLLTSEQS ALV  XXXXXXXXXXX  A PGQGGVC DRGRV GNR ++
Sbjct: 3790 DGEDVEMEDANDVAGDAXXXXXXXXXXXXXXXXXXXECRRKRLALLVNKWTHAGVACRWLLQHLLTSEQSQALVXXXXXXXXXXXXX--APPGQGGVCWDRGRVGGNRREQ 3898
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15262.3957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK76_ECTSI4.770e-3595.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCR7_9PHAE5.580e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK75_ECTSI1.020e-2081.98Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15262contigEcto-sp13_S_contig15262:540..3116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.4
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7FK75
Model size1234
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
Cds size1227
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.5830975-UTR-Ecto-sp13_S_contig15262:539..5441681462811.5830975-UTR-Ecto-sp13_S_contig15262:539..544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15262 540..544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.595849-CDS-Ecto-sp13_S_contig15262:544..11981681462811.595849-CDS-Ecto-sp13_S_contig15262:544..1198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15262 545..1198 +
1681462811.606088-CDS-Ecto-sp13_S_contig15262:1482..17061681462811.606088-CDS-Ecto-sp13_S_contig15262:1482..1706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15262 1483..1706 +
1681462811.620764-CDS-Ecto-sp13_S_contig15262:2542..27111681462811.620764-CDS-Ecto-sp13_S_contig15262:2542..2711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15262 2543..2711 +
1681462811.6304257-CDS-Ecto-sp13_S_contig15262:2936..31161681462811.6304257-CDS-Ecto-sp13_S_contig15262:2936..3116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15262 2937..3116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15262.3957.1prot_Ecto-sp13_S_contig15262.3957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15262 545..3116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15262.3957.1

>prot_Ecto-sp13_S_contig15262.3957.1 ID=prot_Ecto-sp13_S_contig15262.3957.1|Name=mRNA_Ecto-sp13_S_contig15262.3957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
MGSGGKRARGEGVARVPAVGGGSGGGGVDGSEPAVTATGAAAPAEAQVGG
EEEGSVERGLRGQQQPQQQPQQQPQPQQQLQQQQQPQQQQQQQQQRQQQQ
QPVAATAAAPPPPAAASAAAAAAAGAKVAGDGDDHDCGAVPPEGGNSNRS
APGKGKSSFSVSVTVGGDKGGGRGRGRRRRASAREDGEDVEMEDAKDAAG
DAAEAEAEARLGEEKEQQRRRDRRRKRLALLVNKWTHAGVACRWLLQHLL
TSEQSHALVAAAAAAAAAAAAAAGALPGQGGVCSDRGRVAGNRNDKGRSR
PSTASVLAMPTAVIGSDCWTLRPGARTAMHDLLVTLVGNSVQCATMVAES
ILQETAKRVTRMTQIHIHRRNDYELHRHENEGNGSPTTATAAAAGGGGGT
GTGGTVRAK
back to top

mRNA from alignment at Ecto-sp13_S_contig15262:540..3116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15262.3957.1 ID=mRNA_Ecto-sp13_S_contig15262.3957.1|Name=mRNA_Ecto-sp13_S_contig15262.3957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15262:540..3116+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCAATGGGTAGTGGAGGCAAGCGAGCGCGAGGGGAGGGGGTTGCCAGG
GTCCCCGCTGTTGGGGGCGGGAGTGGGGGTGGCGGCGTGGATGGGTCTGA
ACCGGCGGTTACAGCGACGGGGGCGGCAGCACCAGCAGAAGCGCAAGTTG
GCGGTGAAGAAGAAGGCTCTGTAGAGAGAGGGTTGCGAGGGCAGCAGCAA
CCGCAGCAGCAACCACAACAGCAACCGCAACCACAGCAGCAATTGCAACA
GCAGCAGCAACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGC
AGCAGCAACCTGTCGCAGCGACAGCGGCAGCGCCGCCGCCGCCAGCAGCA
GCATCTGCAGCAGCAGCAGCAGCAGCCGGGGCAAAGGTCGCGGGCGATGG
TGACGACCACGATTGCGGTGCGGTACCGCCGGAAGGGGGAAACAGCAACC
GATCGGCGCCGGGCAAGGGGAAGAGCAGCTTCAGCGTGAGCGTCACTGTC
GGCGGGGACAAGGGTGGGGGTAGGGGACGGGGGAGGAGAAGACGGGCTTC
CGCTAGAGAGGACGGAGAGGACGTCGAGATGGAAGACGCTAAGGATGCGG
CGGGCGATGCGGCTGAGGCTGAGGCTGAGGCAAGGCTGGGGGAAGAAAAG
GAGCAACAGGTGAGGGGGGGGAATGCCGCGTGAGGGTACCGCTTGAAGCC
TGATTCGAAGTGTGGCAGTTCCTGGGTCAAGGTTTCCCCTACGACTTATT
CTTGTTGCCGAGGAGTCCTCTATTTCTCCCATTTGTGGGAACCGCTGAAT
CACAGCGTTAACTCTGTTGTTGCAGCGGCTTTGGGGACGCAATTCCAAAA
ATAGAATTGGGCATCTGTCTCCTTGGTTGAAGTAGGTGCTGCGTGACGTC
CTGCCCCCCACGTCTGCCGTCTGTTTTGCCTGTTTTTTTCCAGCGCCGAC
GTGATCGTCGTCGCAAGAGGCTGGCCTTGCTGGTGAATAAGTGGACCCAC
GCCGGCGTAGCGTGCCGGTGGCTGTTGCAGCACCTCTTGACTTCGGAACA
GAGTCACGCGCTTGTTGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTG
CTGCGGCTGGCGCACTGCCCGGGCAGGGAGGGGTCTGCTCGGACCGGGGA
CGTGTTGCAGGCAACAGGCGAGAATAGTACGGCCTTGTGTGTCGCCTAGA
CTCCCACCATATGTAGTGGGCTTGAAAGGGGACGAGACACATAGAGAGAG
GGGGTTCTTGCGTGGTCCACACCCACCAACCAAGGCGGGCTTCAGGAAAC
AGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
GGTGGTAGCACAGAGAATAACTGGTAGTGATAAAGGACGACAAGTTAACG
CACGCCTCTCCGTTGGTTCTGGTCCTCCTCTGGGAAGTTAATTCACAAGA
AAATACACACGACTCCTTCTTACACTTTGGTCCGCTCCTCGCCTGTCTTT
TCGGGGATAAACTTCAGAAATGTCTCTTTTCCTTCTTTTCTGGTGGTTTA
ATCATATGGCACCCGGATATCTTTCTTGATTGTCCTCTGGATATCGTTCG
TGCATGTCTGGGAGACGAAAGGCGGGCAGGAGAAATTCGAGGTGTTTCCC
ACCCTTAAACTAGTTGGAGACACAATGTTTAAGAGTACAAGGCGCGCCTT
CGTAGTGGAAGTAGAGCAGGTGTGGATGTGAATCAGCTACCAGCAGCCAT
CAGTGACGTTTCCGAAGCTCAAACAGCTGACGTGTTGTTGACTCGAAGAG
CCCAGCGAACTAAAAGAATAGTATACAAATCTCTATACTGTCTTATTCGG
CAATGAACGCCGGAAGAGCAAGGAGTCGGGGTTTTTCGTGGTTTCCAGTC
GCTTTTATCGGGTCGTTTTTGTTGCTAACCCTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCACCGCTTCTTTAACATCCCTTTTGGCTTGATGTTGGTTT
CAGGAACGACAAAGGCAGGAGTCGACCGTCGACAGCGTCAGTGCTCGCGA
TGCCTACGGCAGTCATCGGGTCGGACTGCTGGACGCTACGGCCGGGCGCC
CGGACGGCTATGCACGACCTCCTCGTGACCCTCGTGGGCAACAGCGTCCA
ATGCGCGACGATGGTAGCCGAGGTAAACGCATGTTGGCAAAGAAAGAAAC
TTAATGAATAAAAACAAGGAAGCCATGGTTTGCGTGCTCCTGTAGAATAC
GTATGCAGTGATGTGCGTGCTAGAATATGTACTGTAATTAGCGACTGCGG
TGAGTGCGGTTTTCGATTTTTCCTCGACAAGTTTCTTTCTAACACGAAGT
TTTTTTTTTGTCCTCTGATTTTTGTGTGTATGCGTGCTGTGTCCCAGTCC
ATCTTGCAGGAGACGGCGAAACGAGTCACCCGCATGACCCAGATTCACAT
CCACCGGCGGAACGACTACGAGCTGCACCGGCACGAGAACGAGGGGAACG
GGTCGCCTACAACAGCAACAGCAGCAGCAGCAGGGGGAGGGGGGGGGACC
GGTACCGGGGGCACCGTGAGGGCGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15262:540..3116+

>mRNA_Ecto-sp13_S_contig15262.3957.1 ID=mRNA_Ecto-sp13_S_contig15262.3957.1|Name=mRNA_Ecto-sp13_S_contig15262.3957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15262:540..3116+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGTGGAGGCAAGCGAGCGCGAGGGGAGGGGGTTGCCAGGGTCCC
CGCTGTTGGGGGCGGGAGTGGGGGTGGCGGCGTGGATGGGTCTGAACCGG
CGGTTACAGCGACGGGGGCGGCAGCACCAGCAGAAGCGCAAGTTGGCGGT
GAAGAAGAAGGCTCTGTAGAGAGAGGGTTGCGAGGGCAGCAGCAACCGCA
GCAGCAACCACAACAGCAACCGCAACCACAGCAGCAATTGCAACAGCAGC
AGCAACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCAGCAG
CAACCTGTCGCAGCGACAGCGGCAGCGCCGCCGCCGCCAGCAGCAGCATC
TGCAGCAGCAGCAGCAGCAGCCGGGGCAAAGGTCGCGGGCGATGGTGACG
ACCACGATTGCGGTGCGGTACCGCCGGAAGGGGGAAACAGCAACCGATCG
GCGCCGGGCAAGGGGAAGAGCAGCTTCAGCGTGAGCGTCACTGTCGGCGG
GGACAAGGGTGGGGGTAGGGGACGGGGGAGGAGAAGACGGGCTTCCGCTA
GAGAGGACGGAGAGGACGTCGAGATGGAAGACGCTAAGGATGCGGCGGGC
GATGCGGCTGAGGCTGAGGCTGAGGCAAGGCTGGGGGAAGAAAAGGAGCA
ACAGCGCCGACGTGATCGTCGTCGCAAGAGGCTGGCCTTGCTGGTGAATA
AGTGGACCCACGCCGGCGTAGCGTGCCGGTGGCTGTTGCAGCACCTCTTG
ACTTCGGAACAGAGTCACGCGCTTGTTGCTGCCGCTGCCGCTGCCGCTGC
CGCTGCCGCTGCTGCGGCTGGCGCACTGCCCGGGCAGGGAGGGGTCTGCT
CGGACCGGGGACGTGTTGCAGGCAACAGGAACGACAAAGGCAGGAGTCGA
CCGTCGACAGCGTCAGTGCTCGCGATGCCTACGGCAGTCATCGGGTCGGA
CTGCTGGACGCTACGGCCGGGCGCCCGGACGGCTATGCACGACCTCCTCG
TGACCCTCGTGGGCAACAGCGTCCAATGCGCGACGATGGTAGCCGAGTCC
ATCTTGCAGGAGACGGCGAAACGAGTCACCCGCATGACCCAGATTCACAT
CCACCGGCGGAACGACTACGAGCTGCACCGGCACGAGAACGAGGGGAACG
GGTCGCCTACAACAGCAACAGCAGCAGCAGCAGGGGGAGGGGGGGGGACC
GGTACCGGGGGCACCGTGAGGGCGAAG
back to top