mRNA_Ecto-sp13_S_contig15259.3956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15259.3956.1
Unique NamemRNA_Ecto-sp13_S_contig15259.3956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.790e-112
Identity = 179/207 (86.47%), Postives = 180/207 (86.96%), Query Frame = 2 
Query:  134 PPACRKEPSR*KAHVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 754
            PP  R+        VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKV               WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQ  L
Sbjct:  476 PPGLRQ--------VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKV---------------WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNEL 659
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 1.810e-108
Identity = 176/207 (85.02%), Postives = 178/207 (85.99%), Query Frame = 2 
Query:  134 PPACRKEPSR*KAHVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 754
            PP  R+        VLEKKEGLFRKHMMGKRVNYACRSVISPDPY+GTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLS PGQKV               WRHL DGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQ  L
Sbjct:  477 PPGLRQ--------VLEKKEGLFRKHMMGKRVNYACRSVISPDPYLGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSIPGQKV---------------WRHLKDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNEL 660
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.900e-86
Identity = 137/193 (70.98%), Postives = 157/193 (81.35%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 754
            +LEKKEGLFRKHMMGKRVN++CRSVISPDPY+GTTEIGIP RFAK L +PQPVA WNVE +R LVENG   YPGAN++ED++G++++L R S ++R+G+AARLLS PGQKV               WRHL D D MLVNRQPTLHKPGIMAH  R+LRNP YQTIRMHYANCNTYNADFDGDEINCHLPQ  +
Sbjct:  393 ILEKKEGLFRKHMMGKRVNHSCRSVISPDPYIGTTEIGIPERFAKVLCFPQPVAAWNVEHLRTLVENGADFYPGANYIEDAAGKLINLRRQSAVQRKGMAARLLSEPGQKV---------------WRHLQDRDAMLVNRQPTLHKPGIMAHHARILRNPTYQTIRMHYANCNTYNADFDGDEINCHLPQNEV 570
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A6A5A090_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A090_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.470e-78
Identity = 120/196 (61.22%), Postives = 144/196 (73.47%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPV---WRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 754
            ++EKKEGLFRKHMMGKRVNYA RSVISPDPY+ T+EIG+PL+FAK LT PQ V  WNVE MRQLVENG  ++PGANFVE+  G+++ L + +  +R  +   LL+       +  SA  +  +H V   WRHL  GD +L+NRQPTLHKP +MAH  RVL NP  QTIRMHYANCNTYNADFDGDE+N H PQ  L
Sbjct:   28 LIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSEIGVPLKFAKTLTLPQAVTPWNVEEMRQLVENGPDIHPGANFVENERGQLIDLSKRTHHQRVAIGKTLLT-------RSASAHGAHQEHKVKRVWRHLHSGDVVLMNRQPTLHKPSMMAHVTRVLTNPAMQTIRMHYANCNTYNADFDGDEMNMHFPQNEL 216
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 265 bits (678), Expect = 1.200e-77
Identity = 135/228 (59.21%), Postives = 157/228 (68.86%), Query Frame = 2 
Query:   71 DTGAKLGEVQVGTAIEEAGFLPPACRKEPSR*KAHVLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRL 754
            D  A+LG           G L P  R+         LEKKEGLFR HMMGKRVN+ACRSVISPDPY+GT+EIG+PLRFAK LTY QPV  +N   +R+ VE G   +PGAN+VED+ GR++ L R+   +RR +AARLL+ PGQ                VWRHL DGD +L+NRQPTLHKPGIMAHR RVLR+P  QTIRMHYANCNTYNADFDGDE+NCH PQ  L
Sbjct:  440 DANARLG----------GGNLTPGIRQG--------LEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGRLIDLRRMDAGRRRALAARLLTPPGQ---------------TVWRHLQDGDMVLMNRQPTLHKPGIMAHRARVLRSPAQQTIRMHYANCNTYNADFDGDEMNCHFPQDEL 634
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A484E7B9_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B9_BRELC)

HSP 1 Score: 254 bits (650), Expect = 6.850e-74
Identity = 122/198 (61.62%), Postives = 144/198 (72.73%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 769
            V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  ++PGANFVE  SGR++ L + +  +R  ++  LL+     +    + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  458 VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDMHPGANFVESESGRLIDLSKRTPHQREAISKTLLTRSASALGTSKNRVKR-----VWRHLKTGDVVLMNRQPTLHKPSIMAHTTRVLTNPNMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 650
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A7S1FLV4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLV4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 9.190e-74
Identity = 123/198 (62.12%), Postives = 149/198 (75.25%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 769
            +LEKKEG+FRKHMMGKRVNYACRSVISPDPY+GT EIG+PL+FA++LTYP  V  +NV  MR+LV NGT+ YPGA +V+D  G+ + L  + D+KR  +A RLLS  GQ V              V R + +GD +L+NRQPTLHKPGIMAH+VR+L NP  QTIRMHYANCNTYNADFDGDE+NCHLPQ ++    A
Sbjct:  319 LLEKKEGMFRKHMMGKRVNYACRSVISPDPYIGTNEIGLPLKFAQKLTYPCHVTAFNVAEMRKLVANGTARYPGAVWVQDPHGKRMMLTHMIDVKREAIANRLLSGEGQYV--------------VGRQIQNGDMVLMNRQPTLHKPGIMAHQVRILYNPLQQTIRMHYANCNTYNADFDGDEMNCHLPQDQISRSEA 502
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: H3H1S7_PHYRM (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3H1S7_PHYRM)

HSP 1 Score: 254 bits (648), Expect = 1.270e-73
Identity = 123/198 (62.12%), Postives = 143/198 (72.22%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 769
            V+EKKEGLFRKHMMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  V+PGANFVE  +GR++ L + S  +R  ++  LL+          + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  449 VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESENGRLIDLSKRSPHQREAISKTLLTRSASAQGTSKNRVKR-----VWRHLKTGDVVLMNRQPTLHKPSIMAHTTRVLTNPKMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 641
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A0N7L4X0_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4X0_PLAHL)

HSP 1 Score: 253 bits (646), Expect = 2.350e-73
Identity = 121/198 (61.11%), Postives = 144/198 (72.73%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 769
            ++EKKEGLFRKHMMGKRVNYA RSVISPDPY+GT++IG+PLRFAK LTYPQPV  WNV+ MRQLV NG  V+PGANFVE  +GR++ L + +  +R  ++  LL+          + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  448 IIEKKEGLFRKHMMGKRVNYAARSVISPDPYIGTSQIGVPLRFAKTLTYPQPVTPWNVKEMRQLVINGPDVHPGANFVESENGRLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKR-----VWRHLMTGDVVLMNRQPTLHKPSIMAHTTRVLTNPKMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 640
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BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Match: A0A662Y848_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y848_9STRA)

HSP 1 Score: 253 bits (645), Expect = 3.140e-73
Identity = 121/198 (61.11%), Postives = 143/198 (72.22%), Query Frame = 2 
Query:  176 VLEKKEGLFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVRKKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNA 769
            ++EKKEGLFRKHMMGKRVNYA RSVISPDPY+ T++IG+PLRFAK LTYPQPV  WNVE MRQLV NG  V+PGANFVE  +GR++ L + +  +R  ++  LL+          + +       VWRHL  GD +L+NRQPTLHKP IMAH  RVL NP  QTIRMHYANCNT+NADFDGDE+N H PQ  L    A
Sbjct:  216 IIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDVHPGANFVESEAGRLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKR-----VWRHLKTGDVVLMNRQPTLHKPSIMAHTTRVLTNPKMQTIRMHYANCNTFNADFDGDEMNMHFPQNELARSEA 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15259.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY1_ECTSI1.790e-11286.47DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KJ16_9PHAE1.810e-10885.02DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA2.900e-8670.98DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A6A5A090_9STRA1.470e-7861.22DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]
K8YRY5_NANGC1.200e-7759.21DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A484E7B9_BRELC6.850e-7461.62DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A7S1FLV4_9STRA9.190e-7462.12DNA-directed RNA polymerase (Fragment) n=1 Tax=Cor... [more]
H3H1S7_PHYRM1.270e-7362.12DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A0N7L4X0_PLAHL2.350e-7361.11DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A662Y848_9STRA3.140e-7361.11DNA-directed RNA polymerase (Fragment) n=2 Tax=Not... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15259contigEcto-sp13_S_contig15259:591..3025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score337.4
Seed ortholog evalue4.2e-90
Seed eggNOG ortholog2880.D7FNY1
Model size775
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.negative regulation of protein localization to nucleolus
EggNOG OGsCOG0086@1,KOG0262@2759
EC2.7.7.6
Cds size564
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.5045319-CDS-Ecto-sp13_S_contig15259:590..8151681462811.5045319-CDS-Ecto-sp13_S_contig15259:590..815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15259 591..815 -
1681462811.5177317-CDS-Ecto-sp13_S_contig15259:1264..14191681462811.5177317-CDS-Ecto-sp13_S_contig15259:1264..1419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15259 1265..1419 -
1681462811.5274022-CDS-Ecto-sp13_S_contig15259:1731..19151681462811.5274022-CDS-Ecto-sp13_S_contig15259:1731..1915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15259 1732..1915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.5363874-UTR-Ecto-sp13_S_contig15259:1915..19511681462811.5363874-UTR-Ecto-sp13_S_contig15259:1915..1951Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15259 1916..1951 -
1681462811.5490332-UTR-Ecto-sp13_S_contig15259:2850..30251681462811.5490332-UTR-Ecto-sp13_S_contig15259:2850..3025Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15259 2851..3025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15259.3956.1prot_Ecto-sp13_S_contig15259.3956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15259 591..1915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15259.3956.1

>prot_Ecto-sp13_S_contig15259.3956.1 ID=prot_Ecto-sp13_S_contig15259.3956.1|Name=mRNA_Ecto-sp13_S_contig15259.3956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMR
QLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQKVR
KKDSALPSFFQHPVWRHLTDGDCMLVNRQPTLHKPGIMAHRVRVLRNPGY
QTIRMHYANCNTYNADFDGDEINCHLPQVRLLGDNAI*
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mRNA from alignment at Ecto-sp13_S_contig15259:591..3025-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15259.3956.1 ID=mRNA_Ecto-sp13_S_contig15259.3956.1|Name=mRNA_Ecto-sp13_S_contig15259.3956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15259:591..3025- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCGTTTCCACTCTCTACTCGTCGTGAGTATTCACATATGCATCCTGGG
AAATGAAGGCTCGTTTCTGGGATACTGGTGCCAAGCTGGGCGAGGTCCAG
GTTGGCACTGCTATCGAAGAGGCGGGCTTTCTACCACCGGCTTGCCGAAA
GGAACCCTCGCGATAGAAAGCACATGTACGGACACGTAACTCCTTTGTTG
TTCTTCTGCTCAGTGTACGGTACTCGTGTCTCTTTGCTTCACGCATATTC
CCGTTTATGATGGCAAGTTTCGCGTGTAAACAGAAGTCACGAATGTGTTG
TTACTAGTGTAGCACCTGTGTGGCTCCTTCATTCTAGTGGAATTCTTGCT
TTCATGCGTGCAACGATCGTTTGCAGCACCACAGATGGTGTTCGGCAGGG
CAGTTATTTGTTTATGTTGGAAGTTTTTCCCTGAATCGGCTCTTCAGCGT
CGTCGGTGAGACTAACTCTATTATCCGGCCTGGAGGCATTCTTCTCTTAC
TTCGCGCCAGAGCTTAATTGCTACGGTGTGATGGTATCCGTCGGTCCGTC
AGCACGTTTCGAAGCCGTACAAGTCTAACAAAAGTGGCTTGTCGCGGTCA
AATATTCGCTGCAAGAGCAACAGTCCCAAAACGGGATGGCTAGAAGTTTT
GGGTGGGAGGGGTTTGCGAGAGGCCTGCACGGTGTCCTCTCTGGAGCCGC
TGCACGTGCCCGCTCTGGTCGAACTTAACTCTCAATAACTTCGCGTGCAT
TCTTTCCGATGAGCTCGACACCTGTACACGTCGTCGTCATTAAGCGGCTG
CGACGCGTGCAAATGCGTTCTTGACGACGATCTGTTTTCCGTCATGAACT
TTCACAGAAACGTTGTGGGCGATACCCGTCATCATGATGGCGTATTGCGG
CTTTGGTAGCCGTACTTGTCGTTTTTTGGGCGTGGTGCCTCAGCCGTCGT
GCATCCTGTGATGCACTGCGCTCGCGTGAATTGCGTGGGTTTGAAATCAG
GCTGTCGGCGTTTTTTCCTCAACCGGGCTGGGTGTTCACATTTTCTCGTG
TACGTCATCTCTTGTACCACCTAGGTCCTGGAGAAAAAGGAAGGCTTGTT
CCGCAAGCATATGATGGGGAAGCGGGTCAACTACGCTTGCCGCTCCGTGA
TCTCCCCCGATCCGTACGTCGGCACCACCGAGATCGGCATCCCCCTGCGG
TTCGCCAAGGAGCTCACGTACCCGCAGCCCGTTGCGGACTGGAATGTGGA
GGCAATGCGACAGCTGGTGGAGAATGGGACGAGCGTTTATCCCGGTGGGT
TGCTTTTTTGCGTTGGTTGTTTGGTGTGGGTGGCACACGTGTTGCGTGTG
TTTTCTACATATCGGATCTTTTGTGGGATTGTTTGTGCTGCCAGTATCAA
ACGCGTTTGATGTGCCCGCAGGATTTTCACGTATCCCGTCAGTGTGGGAT
TATTTGTGCTTCACCTACTGCAGTTGACTGAGGCCTATTTGGGTACATGC
TTTTTTGGTCATATGTACGGGTTGCTCTCGTTCCCTAGCAGAGTGTCACA
GACAAGTGTTATTGATTTGGTTTGTTTTTCTTGCCATTTTTATGCTTGTC
CTTCAGGAGCAAATTTCGTTGAAGACTCTTCAGGTCGGATGCTTCACCTC
GACAGACTGTCCGACCTGAAGAGGAGAGGCGTGGCGGCCCGGCTGCTCTC
CAGCCCGGGTCAAAAGGTGCGCAAGAAGGACTCTGCGTTGCCGTCTTTCT
TCCAGCACCCCGTGTGATTATGTCGTCTCCCCTAACAACCGCTCCACATA
AGAACTGTATGTGGCTCACGTGAAGAACACGAAATTCGCGCCGTCAAAAC
CGTATCCAAGACCTCGATGAGTGTTTTGAATGCGGAAACATCCGCTCGGG
GACCTCGCCTATTTTTTTCCGTCTAACGGACAACAGCGCCAGTCATGTGG
TCGCGAAGTTTCGCAGGGTTTTCTGGTCATATTTGGATGACCGCGCCAAT
CATTTTAGCGCGGGCGCTTCACAAGCTGGTGGTAACAGCGTTGTTGCTGT
CCAAGCCCTACGAACGAGCTTTTTTGGACGTCTAAAATGACCTCGGGTAA
AATGCTGTTGATGCACCTGCTCGTCACCTGGAATTTCTCTGTACTGACGA
CTCCCAAATTTCATTTGTTGCCCGGTCAAACCAACTTTGATGTTTGGTCG
TGCTGTGAAGGTGTGGAGGCATTTGACGGACGGGGACTGCATGCTTGTGA
ACCGTCAGCCGACCCTCCACAAGCCCGGCATCATGGCACACCGTGTCCGC
GTTCTCCGCAACCCGGGGTACCAGACGATCCGGATGCACTACGCCAACTG
CAACACGTACAACGCCGATTTCGACGGGGACGAGATTAACTGCCACCTGC
CGCAGGTGCGCTTGCTCGGAGACAACGCTATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15259:591..3025-

>mRNA_Ecto-sp13_S_contig15259.3956.1 ID=mRNA_Ecto-sp13_S_contig15259.3956.1|Name=mRNA_Ecto-sp13_S_contig15259.3956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15259:591..3025- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGGGAAGCGGGTCAACTACGCTTGCCGCTCCGTGATCTCCCCCGA
TCCGTACGTCGGCACCACCGAGATCGGCATCCCCCTGCGGTTCGCCAAGG
AGCTCACGTACCCGCAGCCCGTTGCGGACTGGAATGTGGAGGCAATGCGA
CAGCTGGTGGAGAATGGGACGAGCGTTTATCCCGGAGCAAATTTCGTTGA
AGACTCTTCAGGTCGGATGCTTCACCTCGACAGACTGTCCGACCTGAAGA
GGAGAGGCGTGGCGGCCCGGCTGCTCTCCAGCCCGGGTCAAAAGGTGCGC
AAGAAGGACTCTGCGTTGCCGTCTTTCTTCCAGCACCCCGTGTGGAGGCA
TTTGACGGACGGGGACTGCATGCTTGTGAACCGTCAGCCGACCCTCCACA
AGCCCGGCATCATGGCACACCGTGTCCGCGTTCTCCGCAACCCGGGGTAC
CAGACGATCCGGATGCACTACGCCAACTGCAACACGTACAACGCCGATTT
CGACGGGGACGAGATTAACTGCCACCTGCCGCAGGTGCGCTTGCTCGGAG
ACAACGCTATATGA
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