mRNA_Ecto-sp13_S_contig15257.3955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15257.3955.1
Unique NamemRNA_Ecto-sp13_S_contig15257.3955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15257.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15257contigEcto-sp13_S_contig15257:876..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size319
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.4417465-CDS-Ecto-sp13_S_contig15257:875..10091681462811.4417465-CDS-Ecto-sp13_S_contig15257:875..1009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15257 876..1009 +
1681462811.4512084-CDS-Ecto-sp13_S_contig15257:1561..17451681462811.4512084-CDS-Ecto-sp13_S_contig15257:1561..1745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15257 1562..1745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15257.3955.1prot_Ecto-sp13_S_contig15257.3955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15257 876..1745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15257.3955.1

>prot_Ecto-sp13_S_contig15257.3955.1 ID=prot_Ecto-sp13_S_contig15257.3955.1|Name=mRNA_Ecto-sp13_S_contig15257.3955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MQFDIRLPRRSALPRERWLRGGQPSHQSQGGVRVQPMHRRVRLCSGVLEL
LATIPRHWDGSSFGSGRGEDTHVAWTRPGRVKSYARKSRGNAAKGVSVDH
LHLSVQ
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mRNA from alignment at Ecto-sp13_S_contig15257:876..1745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15257.3955.1 ID=mRNA_Ecto-sp13_S_contig15257.3955.1|Name=mRNA_Ecto-sp13_S_contig15257.3955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15257:876..1745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTTCGACATCCGCCTACCCAGACGCTCTGCTTTGCCTCGAGAACG
CTGGCTGCGAGGGGGACAACCTTCACACCAATCTCAAGGAGGAGTGCGTG
TTCAACCTATGCACCGAAGAGTTCGCCTGTGTAGGTGAGGGAAAGCCCTC
TTATCCCAGGCGACTATTTCAAGCGAAGGTGTTTGCCCACGGTTCAGAAG
GAGGGAGCCACCGCCCGGCACGCAAGCAGCTCAACAAGCATGTCACCTGT
CGGTACAGGCTCAATCGACACGCTACTCTTACAATCGCTGCTACAGGGGC
GGGACGGGTCTGTAAGGAGTAATTTGTGCTGCTATCAGCCCCGCCGTAAC
CCCTTCGCTGGTTTGTACCGCACTGTGTAGCCATGCCGGTCTATTTGGTT
CCTCCAGAGCGGGGTTGTTGTACGGGCAGCACGCCAACCGGCTCGTGTGT
AGCTGTGGCACTCGCCAGCCGCAATGGAGATACCCCCCCCGGATCAGTTA
TTCCCCGAACAGGAGGGGTGGCAAAGACCGGGCCAAGCCATTTCTGTGGG
GAAGAGGTTGTCGAACTTCGCGCAGTGGTGTCATGATTGTTGCTTGCACA
TGGCGCACAGAGCCTTTCTTTCCTAAGGTCTTCGACTAATAAGTACCATT
TTTGCGTCAAACACATCCCAAACGAAACATTGACAGCGGCGTACTCGAGC
TCTTGGCGACGATCCCCCGCCATTGGGACGGCAGTAGTTTTGGCTCTGGC
CGTGGCGAAGATACCCACGTCGCTTGGACTCGGCCCGGGAGGGTGAAAAG
CTACGCACGAAAAAGTCGGGGAAACGCAGCAAAAGGCGTGTCTGTCGACC
ACCTACACCTCTCTGTCCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15257:876..1745+

>mRNA_Ecto-sp13_S_contig15257.3955.1 ID=mRNA_Ecto-sp13_S_contig15257.3955.1|Name=mRNA_Ecto-sp13_S_contig15257.3955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15257:876..1745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTTCGACATCCGCCTACCCAGACGCTCTGCTTTGCCTCGAGAACG
CTGGCTGCGAGGGGGACAACCTTCACACCAATCTCAAGGAGGAGTGCGTG
TTCAACCTATGCACCGAAGAGTTCGCCTGTGTAGCGGCGTACTCGAGCTC
TTGGCGACGATCCCCCGCCATTGGGACGGCAGTAGTTTTGGCTCTGGCCG
TGGCGAAGATACCCACGTCGCTTGGACTCGGCCCGGGAGGGTGAAAAGCT
ACGCACGAAAAAGTCGGGGAAACGCAGCAAAAGGCGTGTCTGTCGACCAC
CTACACCTCTCTGTCCAA
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