mRNA_Ecto-sp13_S_contig15250.3951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15250.3951.1
Unique NamemRNA_Ecto-sp13_S_contig15250.3951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 2.600e-63
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 VNLTWGDDADGHHYDCTCDFCPRYKIPCRHVIAVAKWTETANRALELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGELN 336
            VNLTWGDDADGHHYDCTCDFCPR+KIPCRHVIAVAK TETANR LELIS GYSL T+RAAANDS YRIIPPVWDDLTVNP+HRPPL V+G AGRP SGPR +KRIQSNGE+N
Sbjct:  485 VNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSGPRKKKRIQSNGEMN 596
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.800e-35
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  112 TETANRALELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGELN 336
            T TANR+LELIS GYSLETFRAAANDS+Y IIPPVWDD TVNP+H PPLHVQGTAGRP SGPR RKRIQSNG+LN
Sbjct:  180 TGTANRSLELISKGYSLETFRAAANDSTYCIIPPVWDDFTVNPQHSPPLHVQGTAGRPRSGPRKRKRIQSNGKLN 254
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5KIV6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.890e-32
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    1 VNLTWG-DDADGHHYDCTCDFCPRYKIPCRHVIAVAKWTETANRALELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGE 330
            V LT+  DD   HHY CTC FC R++IPCRHV+AVAK      + LEL+  GY L+  RAAA+D  YR+ PPVW  L+VNP H+PPL V G AGR  +  + R++I SNGE
Sbjct:   39 VELTFDEDDPTKHHYTCTCGFCKRWRIPCRHVVAVAKARHQPAKLLELLDEGYRLDKVRAAASDERYRVTPPVWAALSVNPNHKPPLPVDGQAGRRKTKRQTRRKI-SNGE 148
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5KDX5_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.570e-31
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:   22 DADGHHYDCTCDFCPRYKIPCRHVIAVAKWTETANRALELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGE 330
            D  GHH+ CTC FC R++IPCRHVIAVAK      R LELI +GY L+  RAAA+D  YRI PPVW DL VNP H+ PL V+G AGR  +  R  KR +S GE
Sbjct:  103 DPSGHHHTCTCGFCQRWRIPCRHVIAVAKARNEQQRLLELIDDGYRLDRVRAAASDERYRITPPVWADLVVNPNHKAPLRVEGQAGRKKTK-RVTKRRKSVGE 204
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.640e-25
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:    1 VNLTWG-DDADGHHYDCTCDFCPRYKIPCRHVIAVAKW----TETANRA--------------LELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGE 330
            V LT+  DD   HHY CTC FC R++IPCRHV+AVAK      +T ++A               EL+  GY L+  RAAA D  YR+ PPVW  L+VNP H+PPL V G AGR  +  + R+++ SNGE
Sbjct:  146 VELTFDEDDPTKHHYTCTCGFCKRWRIPCRHVVAVAKGGPPQDQTPDQAQDEQRQVRDDLAELXELLDEGYRLDKVRAAAWDERYRVTPPVWAALSVNPNHKPPLPVDGQAGRRKTKRQTRRKM-SNGE 273
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BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.100e-12
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  112 TETAN--------RALELISNGYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPRPRKRIQSNGE 330
            +ETAN        + LEL+  GY L+  RAAA+D  YR+ PPVW   +VNP H+PPL V G AGR  +  + R+++ SNGE
Sbjct:   58 SETANNMIGPDPAKLLELLDEGYRLDKVRAAASDERYRVTPPVWAAFSVNPNHKPPLPVDGQAGRRKTKRQTRRKM-SNGE 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15250.3951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE2.600e-6386.61SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQC0_9PHAE1.800e-3585.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIV6_9PHAE9.890e-3254.05SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KDX5_9PHAE2.570e-3158.25SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN60_9PHAE4.640e-2546.51SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KPK8_9PHAE2.100e-1246.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15250contigEcto-sp13_S_contig15250:141..1375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.1747093-CDS-Ecto-sp13_S_contig15250:140..2491681462811.1747093-CDS-Ecto-sp13_S_contig15250:140..249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15250 141..249 +
1681462811.1866393-CDS-Ecto-sp13_S_contig15250:1146..13731681462811.1866393-CDS-Ecto-sp13_S_contig15250:1146..1373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15250 1147..1373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15250.3951.1prot_Ecto-sp13_S_contig15250.3951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15250 141..1373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15250.3951.1

>prot_Ecto-sp13_S_contig15250.3951.1 ID=prot_Ecto-sp13_S_contig15250.3951.1|Name=mRNA_Ecto-sp13_S_contig15250.3951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
VNLTWGDDADGHHYDCTCDFCPRYKIPCRHVIAVAKWTETANRALELISN
GYSLETFRAAANDSSYRIIPPVWDDLTVNPEHRPPLHVQGTAGRPNSGPR
PRKRIQSNGELN
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mRNA from alignment at Ecto-sp13_S_contig15250:141..1375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15250.3951.1 ID=mRNA_Ecto-sp13_S_contig15250.3951.1|Name=mRNA_Ecto-sp13_S_contig15250.3951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15250:141..1375+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACCTGACTTGGGGCGACGACGCTGATGGCCACCACTACGACTGCAC
GTGCGACTTTTGCCCGAGGTACAAGATCCCCTGCCGCCACGTCATCGCGG
TAGCGAAATGTGAGGCAACTTTTAGGGATAGTGGCTCACGAAGGGTTGTT
GCTTGAATCAGGGTCAGGGCGCGTTCTTTTCGGGACACAATCGTTCCATG
TGAAAACAACCGTTTGCGCTGGTTGATGTTGAGGCATTGTCGTCCAGGTG
TTGTTCATGTGTTCGTTGCTTTTGGGCAGTTATCGTGGGTGTGCCCCATA
TCGCAGATAGAGATGGGGACCGTTTGAAAAACAACCTGTAAATAATATGC
GGTCATTTGGAAACCCACAGGCGTTTATGAGTAAAGCGTATCATACAAAA
AGGAGGCGTTGTACAGTCGGTCATCCCCGGTTAACCGGCGCCAAAATACC
CGGTTATGCGGTTTTGGATTTGAGAGTAGCGCCTCCTGCCCGGTTATTGC
TCATTGGTTGTTCCCTTGTCGTGCCCATCTCTTTTTTGACACCAGGGCAG
TAGATCGTGTGCGTGAAATACACCGGCAGACACCGACTGCGTGATTGAAA
GCAGGCGTGTATACCATAAACTCACATAACATACCCAAGTTTGAGACCTA
ACCCTGCGGCGTTTCCTTAAATGATGCGGTTAACCGGGGCTGAAAATAAA
AGTTAGTGGGTTTGAGAATAGCGCCTCCTAACCGGTTACTAGTTATGCTT
GTCACGCCCGGTGCCCATTTCTAGTCCTAGAACCCGCCGCTTGGTTGTCA
ACCGTGCCTCCGTCTGCCGCTGGCGTATCACACATTTATCCCTCAACTGC
ATGCAGGCGTCGACGATATTGCTGTTTCTTGACTTCCAACAAGTTTTGGA
GTGTTTTCTCCATCGCACGACGTGGCCAAAGCTATCCAGCTCACTAATGT
CACTCTCTTGTTTGTTCACCCCTCCTCGCCCGCACTGCTTCGTGCACCCA
TCACAGGGACCGAGACTGCTAACCGAGCGTTAGAGCTTATCTCCAACGGG
TACTCCCTCGAAACGTTCCGCGCGGCCGCGAACGATTCGAGCTACCGCAT
CATCCCGCCCGTATGGGACGACCTCACCGTCAACCCCGAGCACCGCCCAC
CGCTACACGTTCAAGGGACGGCAGGTCGGCCGAACAGCGGACCACGCCCG
AGAAAGCGCATCCAGTCCAACGGCGAGCTGAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15250:141..1375+

>mRNA_Ecto-sp13_S_contig15250.3951.1 ID=mRNA_Ecto-sp13_S_contig15250.3951.1|Name=mRNA_Ecto-sp13_S_contig15250.3951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15250:141..1375+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACCTGACTTGGGGCGACGACGCTGATGGCCACCACTACGACTGCAC
GTGCGACTTTTGCCCGAGGTACAAGATCCCCTGCCGCCACGTCATCGCGG
TAGCGAAATGGACCGAGACTGCTAACCGAGCGTTAGAGCTTATCTCCAAC
GGGTACTCCCTCGAAACGTTCCGCGCGGCCGCGAACGATTCGAGCTACCG
CATCATCCCGCCCGTATGGGACGACCTCACCGTCAACCCCGAGCACCGCC
CACCGCTACACGTTCAAGGGACGGCAGGTCGGCCGAACAGCGGACCACGC
CCGAGAAAGCGCATCCAGTCCAACGGCGAGCTGAAC
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