mRNA_Ecto-sp13_S_contig15243.3949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15243.3949.1
Unique NamemRNA_Ecto-sp13_S_contig15243.3949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: D8LMZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ8_ECTSI)

HSP 1 Score: 661 bits (1705), Expect = 4.730e-233
Identity = 366/473 (77.38%), Postives = 387/473 (81.82%), Query Frame = 1 
Query:    1 MAIKRIMMLGSLAFIACCPIANSFVFRFSPVQHTFNTNSMLGRKQRGEVGKTIGVPSGETIDGAGVGRTSGAVAIEEKVRIPRVPSALDPEGTTRRVDSPLHLLGKGGDGEGVPMPHGEEFVPVVREREKPQSHNDHDD-THQQQLIQQDEAVEDELERWLHHH--GSRPRGRYRGWTVRWEGFQRHCCTSGLSGLRSTSPTGAGAGDGFCSICDIEHTQHEAAAATTGAVGYPDSAASTSSGISEPWSDTKSVPVESRSIDKYRITSIAESSEVTNNHSRHGLEMAEGSSELPSRAVDARPLLKRVEPIKDDKSSAPTHDGSSPAHTRIAREAASDGQGHDRKWVGRS--HEDTGRSFFSLHLQQFDGPGDFNQGPSLTFPYFPAEIPPPPVQPGATPAATAAAGHGTASRCTPPPQTTDSAAEAPAEEPPDCVDMLTAALHDAWGRGAVRGTSNEPAQDGTTAARQSSAWW 1404
            M IKRIMML + AF+ACCPIANSFV+R S  ++TFNTNSMLGRKQRGEVGKTI VPSG+TIDGAGVGR+SGAVAIEEKVRIPRVPSALDPEG TRRVDSPLH+LGKGGDGEGVP+PH EEFVPVVRE  K  S+ DH D THQQ                      GSRPRGRY GWTVRW+GFQRH   SGLSGLRSTSPTG G GDG CSICD EHT +EAAA TTG VGY D A+ TS GI    SD KSVPVESRS +KY   +I ESSEV NNHSRHGLE A+ S ELPS AVDAR L KRVEPI+DDKSSAPTHDGSSPAHTRIAREA SDGQGHDRK VGRS  HEDTGRSFFSLHLQQFDGP DFNQGPSLTFPYFPAEIPPPPVQ GATPAATAA G+GTASR TPP  TT+S AEAPAEE PD VDMLTAALHDAWGRG +RGTS+ P QDGTTAARQSSAWW
Sbjct:    1 MMIKRIMMLAAWAFVACCPIANSFVYRSSVQRNTFNTNSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDPEGITRRVDSPLHILGKGGDGEGVPVPHEEEFVPVVREGAKSPSNGDHHDVTHQQXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDKEHTPNEAAAPTTGQVGYHDPASETSLGICT--SDMKSVPVESRSTEKYGTATIVESSEVANNHSRHGLEKAKASLELPSCAVDARSLQKRVEPIQDDKSSAPTHDGSSPAHTRIAREAVSDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFNQGPSLTFPYFPAEIPPPPVQSGATPAATAATGYGTASRSTPPDPTTNSPAEAPAEESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTTAARQSSAWW 471
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: D8LMZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ0_ECTSI)

HSP 1 Score: 503 bits (1295), Expect = 2.350e-174
Identity = 279/374 (74.60%), Postives = 297/374 (79.41%), Query Frame = 1 
Query:    1 MAIKRIMMLGSLAFIACCPIANSFVFRFSPVQHTFNTNSMLGRKQRGEVGKTIGVPSGETIDGAGVGRTSGAVAIEEKVRIPRVPSALDPEGTTRRVDSPLHLLGKGGDGEGVPMPHGEEFVPVVREREKPQSHNDHDDTHQQQLIQQDEAVEDELERWLHHH---GSRPRGRYRGWTVRWEGFQRHCCTSGLSGLRSTSPTGAGAGDGFCSICDIEHTQHEAAAATTGAVGYPDSAASTSSGISEPWSDTKSVPVESRSIDKYRITSIAESSEVTNNHSRHGLEMAEGSSELPSRAVDARPLLKRVEPIKDDKSSAPTHDGSSPAHTRIAREAASDGQGHDRKWVGRS--HEDTGRSFFSLHLQQFDGPGDFN 1107
            M IKRIMML + AF+ACCPIANSFV+R S  ++TFNTNSMLGRKQRGEVGKTI VPSG+TIDGAGVGR++GAVAIEEKVRIPRVPSALDPEG TRRVDSPLH+LGKGGDGEGVP+PH EEFVPVVRE  K  S+ D  D  Q                        GSRPRGRY GWTVRW+GFQRH   SGLSGLRSTSPTG G GDG CSICDIEHT +EAAA TTG VGY D A+ TS GI    SD KSVPVESRS +KY   +IAESSEV NNHSRHGLE A+ S ELPS AVDAR L KRVEPI+DDKSSAPTHDGSSPAHTRIAREA SDGQGHDRK VGRS  HEDTGRSFFSLHLQQFDGP DFN
Sbjct:    1 MMIKRIMMLAAWAFVACCPIANSFVYRSSVQRNTFNTNSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSNGAVAIEEKVRIPRVPSALDPEGITRRVDSPLHILGKGGDGEGVPVPHEEEFVPVVREGAKSSSNGDQHDVTQXXXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASETSLGICT--SDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKASLELPSCAVDARSLQKRVEPIQDDKSSAPTHDGSSPAHTRIAREAVSDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFN 372
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 503 bits (1296), Expect = 2.490e-161
Identity = 270/327 (82.57%), Postives = 281/327 (85.93%), Query Frame = 1 
Query:  466 LERWLHHHGSRPRGRYRGWTVRWEGFQRHCCTSGLSGLRSTSPTGAGAGDGFCSICDIEHTQHEAAAATTGAVGYPDSAASTSSGISEPWSDTKSVPVESRSIDKYRITSIAESSEVTNNHSRHGLEMAEGSSELPSRAVDARPLLKRVEPIKDDKSSAPTHDGSSPAHTRIAREAASDGQGHDRKWVGRS--HEDTGRSFFSLHLQQFDGPGDFNQGPSLTFPYFPAEIPPPPVQPGATPAATAAAGHGTASRCTPPPQTTDSAAEAPAEEPPDCVDMLTAALHDAWGRGAVRGTSNEPAQDGTTAARQSSAWWPSEEAGADADDL 1440
            +ER LHHHGSRPRGRY GWTVRWEG QR+CC SGLS LRSTSP GAG GDGFCSICDIEHT HEAAA TTGAVGYPDSAAS+S GIS P SDTKSV VESRS +KY IT+IAESS   NNHS H LE  +GSSELPSR VDAR L KRVEPI+DDKSSAP HDGSSPAH RIAREA SDGQGHDRK VGRS  HEDTGRSFFSL LQQFD P DFNQGPSLTFPYFP EI  PPVQPGA P ATAAAGHGT+SR TPPP+TTDSAAEAPA E PD VD+LTAALHDAWGRGA+RGTSNEPAQDGTTAARQSSAWW  EEAG DADDL
Sbjct:  994 VERRLHHHGSRPRGRYPGWTVRWEGVQRYCCRSGLSRLRSTSPAGAGVGDGFCSICDIEHTPHEAAAPTTGAVGYPDSAASSSLGISGPSSDTKSVAVESRSTEKYGITAIAESSGANNNHSHHALEKTKGSSELPSRVVDARSLQKRVEPIQDDKSSAPMHDGSSPAHIRIAREAVSDGQGHDRKRVGRSYRHEDTGRSFFSLQLQQFDAPEDFNQGPSLTFPYFPEEISRPPVQPGAIPPATAAAGHGTSSRSTPPPRTTDSAAEAPAGESPDYVDILTAALHDAWGRGAIRGTSNEPAQDGTTAARQSSAWWHPEEAGVDADDL 1320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: A0A6H5JPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB1_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 5.820e-61
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 MAIKRIMMLGSLAFIACCPIANSFVFRFSPVQHTFNTNSMLGRKQRGEVGKTIGVPSGETIDGAGVGRTSGAVAIEEKVRIPRVPSALDPEGTTRRVDSPLHLLGKGGDGEGVPMPHGEEFVPV 372
            M IKRIM+LG+ AF+ACCPIANSFV+RFSP+QHTFNTNSMLGRKQRGEVGKTIGVPSG+TIDGAGVGR+SGAVAIEEK+RIPRVPSALDPEG TRRVDSPLH+LGKGGDGE   M  G+E  P 
Sbjct:    3 MMIKRIMILGAWAFVACCPIANSFVYRFSPMQHTFNTNSMLGRKQRGEVGKTIGVPSGKTIDGAGVGRSSGAVAIEEKLRIPRVPSALDPEGITRRVDSPLHILGKGGDGEDEAMEDGDEDAPT 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: A0A6H5JJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF2_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.040e-51
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 MAIKRIMMLGSLAFIACCPIANSFVFRFSPVQHTFNTNSMLGRKQRGEVGKTIGVPSGETIDGAGVGRTSGAVAIEEKVRIPRVPSALDPEGTTRRVDSPLHLLGKGGDGEGV 339
            M IKRIMML + A IACCPIANSF++R S VQHTFNTNSMLGRKQRGEVGKT   PSG+T++GAGVGR+SGAVAIEEKVRIPRVPS LDPE  TRRVDSP H+LGKGGDGE +
Sbjct:    3 MMIKRIMMLAAWALIACCPIANSFIYR-SSVQHTFNTNSMLGRKQRGEVGKTTAAPSGKTVEGAGVGRSSGAVAIEEKVRIPRVPSTLDPERVTRRVDSPFHILGKGGDGEAI 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: A0A6H5JJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.150e-19
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 1 
Query: 1270 EEPPDCVDMLTAALHDAWGRGAVRGTSNEPAQDGTTAARQSSAWWPSEEAGADADDL 1440
            EE PDCVDM TAALHDAWGRGA+ GTS+ P +DGTTAARQSSAWWPSEEAG  ADDL
Sbjct:   34 EESPDCVDMSTAALHDAWGRGAIWGTSHVPPRDGTTAARQSSAWWPSEEAGVHADDL 90
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: D7FQP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.910e-12
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  465 ARALAPPPRFEATGSIPWLDCSLGGVPTALLHEWVVRATLNVTNRGR 605
            ARA APPPRFEATGS+PWL CSL GVP  LL   VVRATLNVTNRGR
Sbjct:  792 ARAPAPPPRFEATGSMPWLGCSLEGVPPTLLQGEVVRATLNVTNRGR 838
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-11
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  465 ARALAPPPRFEATGSIPWLDCSLGGVPTALLHEWVVRATLNVTNRGR 605
            ARA APPPRFEATGS+PWL CSL G+P  LL   VVRATLNVTNRGR
Sbjct: 1197 ARAPAPPPRFEATGSMPWLGCSLEGIPPTLLQGEVVRATLNVTNRGR 1243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15243.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LMZ8_ECTSI4.730e-23377.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMZ0_ECTSI2.350e-17474.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTQ0_9PHAE2.490e-16182.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPB1_9PHAE5.820e-6183.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJF2_9PHAE4.040e-5179.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM1_9PHAE1.150e-1982.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQP4_ECTSI9.910e-1280.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPY7_9PHAE1.380e-1178.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15243contigEcto-sp13_S_contig15243:763..4216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1440
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1440
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.0548205-CDS-Ecto-sp13_S_contig15243:762..10951681462811.0548205-CDS-Ecto-sp13_S_contig15243:762..1095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15243 763..1095 +
1681462811.0654855-CDS-Ecto-sp13_S_contig15243:1734..18641681462811.0654855-CDS-Ecto-sp13_S_contig15243:1734..1864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15243 1735..1864 +
1681462811.075539-CDS-Ecto-sp13_S_contig15243:3239..42161681462811.075539-CDS-Ecto-sp13_S_contig15243:3239..4216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15243 3240..4216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15243.3949.1prot_Ecto-sp13_S_contig15243.3949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15243 763..4216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15243.3949.1

>prot_Ecto-sp13_S_contig15243.3949.1 ID=prot_Ecto-sp13_S_contig15243.3949.1|Name=mRNA_Ecto-sp13_S_contig15243.3949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=480bp
MAIKRIMMLGSLAFIACCPIANSFVFRFSPVQHTFNTNSMLGRKQRGEVG
KTIGVPSGETIDGAGVGRTSGAVAIEEKVRIPRVPSALDPEGTTRRVDSP
LHLLGKGGDGEGVPMPHGEEFVPVVREREKPQSHNDHDDTHQQQLIQQDE
AVEDELERWLHHHGSRPRGRYRGWTVRWEGFQRHCCTSGLSGLRSTSPTG
AGAGDGFCSICDIEHTQHEAAAATTGAVGYPDSAASTSSGISEPWSDTKS
VPVESRSIDKYRITSIAESSEVTNNHSRHGLEMAEGSSELPSRAVDARPL
LKRVEPIKDDKSSAPTHDGSSPAHTRIAREAASDGQGHDRKWVGRSHEDT
GRSFFSLHLQQFDGPGDFNQGPSLTFPYFPAEIPPPPVQPGATPAATAAA
GHGTASRCTPPPQTTDSAAEAPAEEPPDCVDMLTAALHDAWGRGAVRGTS
NEPAQDGTTAARQSSAWWPSEEAGADADDL
back to top

mRNA from alignment at Ecto-sp13_S_contig15243:763..4216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15243.3949.1 ID=mRNA_Ecto-sp13_S_contig15243.3949.1|Name=mRNA_Ecto-sp13_S_contig15243.3949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15243:763..4216+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCAAGCGCATCATGATGTTGGGTTCTTTGGCCTTTATCGCGTG
CTGCCCGATCGCGAACTCCTTCGTCTTCCGTTTTTCGCCGGTACAACACA
CGTTCAACACCAACTCAATGTTGGGCAGGAAACAGAGGGGCGAGGTCGGC
AAGACCATCGGGGTACCCTCAGGCGAGACCATTGACGGGGCTGGCGTTGG
GCGCACCAGCGGCGCGGTCGCCATTGAGGAGAAGGTGCGCATCCCGCGGG
TTCCTTCGGCGCTGGACCCCGAGGGGACTACCCGCAGGGTGGACTCTCCG
CTCCACCTCTTGGGGAAAGGGGGGGATGGGGAGGTGAGCAGGTTAATGTG
TGTCTTTATTGTTAGAATCGACACCGCGCCAATGTGTATTGTGACTCTCG
TATGTTGTTATTCATAGTTCACGGACACACAGACAGACATGCCCACGGAA
ACTCGCTTATAGGACACCTACGCAGCGGGGGTTGGTTCCGGCAGAGCTGT
CTGGTTGTAAGCAAGGAACGACATCCACTTCCTCTGCTGCTGTAGGTGCA
TCATGCGGGGTGACGGTGGGATTTTCTTACATGGAGCAGGCCATTTCTGA
GTATTGGATTTTGAAATGGTTTCCCGTGATGAGTTCTGTACGGACACAAT
AGTAGCTAGACTACAACTTTAGTCTACATACAGTAGATTGTTTTCACACA
AATCATGGTGCAATCCCCGATAACTGAGCAGGGTCACTGGCATCGAGCAT
TTCCTTTGATGTCCCAGTCACATGCGCTCCAGTAGTCATCGCATCTATTG
CAGTACCACATACAGTAGGTCCTGTCGCTTTCCTGCTCAACGTGGGAATG
ACTTTTTTGTTCCGTCGCGATGTACGTGCGTTTACGTGCGTTTTGCGTTT
GATGTGAGTTAGATCTTCACCCCCTTGACCCACATTCTAGATTGACGTTT
CGTTTGCTCTGCTGTTCGGAAGGGTGTGCCGATGCCCCATGGAGAAGAAT
TTGTTCCCGTGGTGAGGGAGAGGGAGAAGCCGCAGAGCCACAACGACCAC
GACGATACCCACCAACAACAACTGATCCAGCAGGATGAAGCAGTGGAAGA
TGGTAAGGCCATTTCGCACCACCTAACTACAGTACTTTTACAGTATTGTA
CCTTTTCTCTTAAAAGAACAACGGTTGGTGGCCGCTGTGCAGGCGATGAG
GACGCCCCCACACCGCTGCTGCTGCCCATGAAGGTGCCGCGGTCGCCTGT
GCTGCTGCTTGCTGCCACTACCAATTTAGAAGTCCAGTACCTCCGGTGTC
GTTGACGCGAACGAGCGGGGAGAAGGTGCTAGGCCGATGCGCCACTCCGA
GCTCCTCTTCCTTGCTTTTCGTGGTAGACATCAAAGTCCGGTGCTGCTCG
CCTGTAGCAATGATTTTGTCGAAGTTGTTGTATTCAGCAGCAGCAGAGGC
GGCTGCGGCGGCACCTTCGTCTACAGCGGCAGCGGTGGGGGCGTCCTCAT
GGCCTGCAGCAGCCTAATGTTGTCGCGGAATTTTCGTATTGGTTATAGTG
TCATTCTAATTTTTATCAGGATGTGGCTCCACCCATGCAGTCGTTTTCAT
CTCTCTCTCGGCCGAATCCACGCTGTTGTTTCACTCGATGCTACATCGGC
TGCGGTAGAACACTCGCAGCGTCAGCAGTGAATCTTAGCCGATGAGATAT
TTATCTACAGTACCTCCTCTCCCAACCTTCAACTTCGCCGTGACCTTCGC
CGTGACCCCCACTATATACTTCACTACAGGTGGTGTTGGTGGTGCGTCGG
TGCCAGAGCACCTGCTGGAACGGTGCGGCAAGATCTGGCGCAACGGCATC
CAGTGGACACACGGCGTCCTCCAACACGACAACTTTATGTCCAAAGTTAG
GCCCCAGTGCCACGCATTATTCAAGCTCTACGCCATCGGCGCCACGAACA
TCCGGCCAGCCCACAACCCCCAAGCCAGAGGCGAGACAAGCCTCCGGCTT
GAGCGTTGTGGGCTTGCTGCCTGCTCGAGCCACTGATGGTGTAGAGATCC
AGAACGGCGTGATACTGGGCCCAAACATTTCGGAGATGAAGTTCTCGTGT
TGGAGGAAGCCGTGTATCCACGGGATGCCGGCACGCCGGATCATCTCGCA
CTCTTCCAGCAGGAAATCTGGCTCCGACGTGCCTACAACACCACCTGTAG
TGAAAGGGTGGGGGTCACGGAGAGGGTGCAGTTTGAAAGGTGCGAAGAGG
CACTCTACGGCATCGCATGAGCGCACGCTCTTGTCTTATCAAACAAAGCT
CTTCATCTACCAATTTTACCGGCCTTGGTCACTTTCCTCGCAATCAAAGC
ACAATCATGCCAACATACGTACGTATTTACCCTCGCTGCTGTATTGTTGG
ACGTATCACTCACATAAATCGCTAGCGGCCTCCTTGTGACCCCCTTCCCC
CCTCCCCGCCCGGCAAACGATAAACAGAGCTCGAGCGCTGGCTCCACCAC
CACGGTTCGAGGCCACGGGGTCGATACCGTGGCTGGACTGTTCGCTGGGA
GGGGTTCCAACGGCACTGTTGCACGAGTGGGTTGTCCGGGCTACGCTCAA
CGTCACCAACAGGGGCAGGTGCGGGGGATGGGTTCTGCTCGATTTGTGAC
ATTGAGCACACGCAGCACGAAGCCGCTGCTGCGACCACCGGAGCAGTTGG
ATATCCCGACTCCGCCGCTTCAACCTCCTCGGGAATTAGTGAACCCTGGA
GCGACACGAAGAGTGTCCCTGTCGAGAGCCGCAGCATTGATAAGTACAGA
ATTACTTCCATCGCAGAGAGCAGCGAGGTGACCAACAATCACAGCCGCCA
CGGCCTGGAGATGGCAGAGGGCTCGTCGGAGCTACCGTCTCGCGCCGTCG
ACGCTCGTCCTTTGCTAAAGCGAGTCGAGCCTATCAAGGACGACAAGAGC
TCCGCCCCGACGCACGACGGGTCGAGTCCTGCCCATACCAGGATCGCGCG
CGAAGCAGCTTCTGATGGTCAAGGTCACGACAGGAAGTGGGTCGGTCGCT
CCCACGAGGACACCGGCCGCTCGTTCTTTAGTCTCCACCTTCAGCAGTTC
GATGGTCCTGGGGACTTCAACCAAGGTCCTTCACTGACCTTTCCCTACTT
TCCGGCCGAGATTCCCCCCCCGCCCGTCCAACCCGGAGCCACTCCCGCCG
CCACCGCCGCCGCCGGGCATGGAACAGCGTCTCGTTGTACACCGCCCCCC
CAGACCACGGACAGCGCTGCCGAAGCCCCTGCCGAAGAACCCCCTGACTG
CGTCGACATGTTGACCGCTGCATTGCATGACGCATGGGGTAGAGGAGCGG
TTCGGGGCACAAGCAACGAGCCTGCCCAGGATGGTACCACTGCCGCTCGC
CAGTCCTCGGCGTGGTGGCCCTCGGAGGAAGCTGGTGCAGACGCTGACGA
CCTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15243:763..4216+

>mRNA_Ecto-sp13_S_contig15243.3949.1 ID=mRNA_Ecto-sp13_S_contig15243.3949.1|Name=mRNA_Ecto-sp13_S_contig15243.3949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15243:763..4216+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCAAGCGCATCATGATGTTGGGTTCTTTGGCCTTTATCGCGTG
CTGCCCGATCGCGAACTCCTTCGTCTTCCGTTTTTCGCCGGTACAACACA
CGTTCAACACCAACTCAATGTTGGGCAGGAAACAGAGGGGCGAGGTCGGC
AAGACCATCGGGGTACCCTCAGGCGAGACCATTGACGGGGCTGGCGTTGG
GCGCACCAGCGGCGCGGTCGCCATTGAGGAGAAGGTGCGCATCCCGCGGG
TTCCTTCGGCGCTGGACCCCGAGGGGACTACCCGCAGGGTGGACTCTCCG
CTCCACCTCTTGGGGAAAGGGGGGGATGGGGAGGGTGTGCCGATGCCCCA
TGGAGAAGAATTTGTTCCCGTGGTGAGGGAGAGGGAGAAGCCGCAGAGCC
ACAACGACCACGACGATACCCACCAACAACAACTGATCCAGCAGGATGAA
GCAGTGGAAGATGAGCTCGAGCGCTGGCTCCACCACCACGGTTCGAGGCC
ACGGGGTCGATACCGTGGCTGGACTGTTCGCTGGGAGGGGTTCCAACGGC
ACTGTTGCACGAGTGGGTTGTCCGGGCTACGCTCAACGTCACCAACAGGG
GCAGGTGCGGGGGATGGGTTCTGCTCGATTTGTGACATTGAGCACACGCA
GCACGAAGCCGCTGCTGCGACCACCGGAGCAGTTGGATATCCCGACTCCG
CCGCTTCAACCTCCTCGGGAATTAGTGAACCCTGGAGCGACACGAAGAGT
GTCCCTGTCGAGAGCCGCAGCATTGATAAGTACAGAATTACTTCCATCGC
AGAGAGCAGCGAGGTGACCAACAATCACAGCCGCCACGGCCTGGAGATGG
CAGAGGGCTCGTCGGAGCTACCGTCTCGCGCCGTCGACGCTCGTCCTTTG
CTAAAGCGAGTCGAGCCTATCAAGGACGACAAGAGCTCCGCCCCGACGCA
CGACGGGTCGAGTCCTGCCCATACCAGGATCGCGCGCGAAGCAGCTTCTG
ATGGTCAAGGTCACGACAGGAAGTGGGTCGGTCGCTCCCACGAGGACACC
GGCCGCTCGTTCTTTAGTCTCCACCTTCAGCAGTTCGATGGTCCTGGGGA
CTTCAACCAAGGTCCTTCACTGACCTTTCCCTACTTTCCGGCCGAGATTC
CCCCCCCGCCCGTCCAACCCGGAGCCACTCCCGCCGCCACCGCCGCCGCC
GGGCATGGAACAGCGTCTCGTTGTACACCGCCCCCCCAGACCACGGACAG
CGCTGCCGAAGCCCCTGCCGAAGAACCCCCTGACTGCGTCGACATGTTGA
CCGCTGCATTGCATGACGCATGGGGTAGAGGAGCGGTTCGGGGCACAAGC
AACGAGCCTGCCCAGGATGGTACCACTGCCGCTCGCCAGTCCTCGGCGTG
GTGGCCCTCGGAGGAAGCTGGTGCAGACGCTGACGACCTT
back to top