mRNA_Ecto-sp13_S_contig15242.3948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15242.3948.1
Unique NamemRNA_Ecto-sp13_S_contig15242.3948.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.170e-42
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASKM 258
            MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELND N  D++EILRAVTAQQ ALL+AAKPAMPK+FYQHVAG+QRAYGKA KM
Sbjct:  105 MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDDN--DDNEILRAVTAQQTALLKAAKPAMPKSFYQHVAGRQRAYGKARKM 188          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 7.850e-41
Identity = 76/86 (88.37%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNE-QDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASK 255
            +EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGE ND+ E QDESEILRAVTAQQ ALLQAAKPA PKTFYQHV GQQRAYGK  K
Sbjct:   95 VEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGEPNDNKEEQDESEILRAVTAQQTALLQAAKPATPKTFYQHVVGQQRAYGKDEK 180          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 7.820e-40
Identity = 72/84 (85.71%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    4 EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASK 255
            EWE RCPPGA MLLAEKRRGGCRAAGCVAVGGELND+N+ DE EILR VTAQQ ALLQAAKP MPKTFYQHVAGQQRAY K  K
Sbjct:   52 EWEDRCPPGAIMLLAEKRRGGCRAAGCVAVGGELNDNNKDDEWEILRVVTAQQTALLQAAKPTMPKTFYQHVAGQQRAYAKDEK 135          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: A0A6H5KGK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.550e-38
Identity = 70/105 (66.67%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    4 EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELND----------------------SNEQDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKAS 252
            EWE RCPPGATMLL EKRRGGCRAAGC+A GGELND                      +NE DE EILRAVTAQQ ALLQAAKP +PKTFYQHVAGQQRA G  S
Sbjct:   52 EWEDRCPPGATMLLVEKRRGGCRAAGCIAAGGELNDVRDGSAFPLAVLVCYALVDHGQNNEDDEWEILRAVTAQQTALLQAAKPTLPKTFYQHVAGQQRACGXVS 156          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D8LCE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.760e-20
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQD---ESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASK 255
            +EWE+RCPPGATMLL+ K+RGGC AAGCVA   + + +  QD   ++ ILRAVT Q  A L+A KP +P++FY HV G +RA+ K  K
Sbjct:  102 VEWEQRCPPGATMLLS-KKRGGCPAAGCVAATAQESVNVGQDVGDDAAILRAVTGQVTARLRAEKPDLPRSFYWHVRGLRRAFDKGPK 188          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: A0A6H5JU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU04_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-16
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    4 EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELND 111
            EWE RCPPGATMLLAEKRRGGCRAAGC+A GGELND
Sbjct:   55 EWEDRCPPGATMLLAEKRRGGCRAAGCIAAGGELND 90          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D7G532_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G532_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.480e-15
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    4 EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASK 255
            EWE RCPP +TMLLA +  G C A GCV    E      +DE E+LR +T++    LQA K  M K+FY HV G +R++GKA K
Sbjct:   99 EWEGRCPPSSTMLLASRMAGSCIAEGCVH--RETQSMAGEDEDELLRVITSEVTQRLQAEKRNMTKSFYAHVRGLRRSFGKAQK 180          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D7FRR6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.220e-13
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 EWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQDESEILRAVTAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKAS 252
            EWE RCPP +TMLLA +  G C AAGCV        S    + E+LR +T++    LQA KP + ++FY HV G +R + K++
Sbjct:   97 EWEGRCPPSSTMLLASRMGGSCIAAGCVH---RETQSMVGGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSN 176          
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.880e-8
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVG--GELNDSN-EQDESEILRAVT 153
            +EWE+RCPPGATMLL+ K+RGGCRAAGCVA    GEL     + DE    R +T
Sbjct:  106 LEWEQRCPPGATMLLS-KKRGGCRAAGCVAAAMEGELTAQLIDVDEKRFTRKLT 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15242.3948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KMQ6_9PHAE9.170e-4288.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D4_ECTSI7.850e-4188.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FRE6_ECTSI7.820e-4085.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGK1_9PHAE9.550e-3866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCE6_ECTSI5.760e-2054.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU04_9PHAE2.180e-1691.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G532_ECTSI1.480e-1548.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRR6_ECTSI5.220e-1343.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3D5_ECTSI1.880e-859.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15242contigEcto-sp13_S_contig15242:3317..4214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462811.0132322-CDS-Ecto-sp13_S_contig15242:3316..34661681462811.0132322-CDS-Ecto-sp13_S_contig15242:3316..3466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15242 3317..3466 -
1681462811.0214884-CDS-Ecto-sp13_S_contig15242:4103..42141681462811.0214884-CDS-Ecto-sp13_S_contig15242:4103..4214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15242 4104..4214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15242.3948.1prot_Ecto-sp13_S_contig15242.3948.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15242 3317..4214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15242.3948.1

>prot_Ecto-sp13_S_contig15242.3948.1 ID=prot_Ecto-sp13_S_contig15242.3948.1|Name=mRNA_Ecto-sp13_S_contig15242.3948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGELNDSNEQDESEILRAV
TAQQIALLQAAKPAMPKTFYQHVAGQQRAYGKASKM*
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mRNA from alignment at Ecto-sp13_S_contig15242:3317..4214-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15242.3948.1 ID=mRNA_Ecto-sp13_S_contig15242.3948.1|Name=mRNA_Ecto-sp13_S_contig15242.3948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=898bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15242:3317..4214- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATGGGAGAAAAGGTGCCCGCCCGGGGCCACCATGCTTTTGGCGGA GAAGCGGAGGGGCGGGTGCCGCGCAGCCGGCTGCGTTGCAGTTGGCGGCG AGCTCAACGACGTGAGAGGTTTTGAGCATTTTTTTCTCGCCCGATGTGTG TACAGCAAGTGTAATGATGTTTTTTTTGTTTCGCTCTGTGACATCTTTAC ATTGAAAGATCTTTCTGTGTAGCATTGTAGACAACCGCAGTTCTATAGCA GTACTACTACTACATGTTGACGTTGCAGACGGCTTGTGTGGTGGGTGGCA TGGTGCCTGCTCAACATGAGAGTGTACTAAACTAAGCCTCGTTTGCGTCG ACGCCTGATGATGCTCGGTCTGCTTAAAGTGTCACCGCTGAAGAAATACT GGGTTTGCTCCTTGCACCACAACAAGGACAAAAAAATTGAAGTCTGCACA GTTTCACGAGCAAATCAACATACCGCGATTGGTATATCTCGAATGGGTAG TCTTTCTGTAGGTGTATTTATTTCTCCTTAATATACCGCGATTGCCGAGG GTTATTGGTCGGGAGTTTTTTCACCCGTTGCCTGTTTAACTCTCCGATCG ATTGTGTGAATTGATTGTCCGGAAGTTGAACGGACGAAACGGACATTTAT TTTGCAGAGGCATTTATTTGTGAGTTCGCTCTCTCATGAAGTCTTTCCGC TGACTCTGTGCGCGGCTTTGCTATGTCTGCGACTTGACAAACGGGCAGAG CAATGAACAAGACGAATCAGAGATCCTGCGGGCGGTCACGGCCCAACAGA TCGCGCTCCTTCAGGCCGCGAAGCCCGCAATGCCCAAGACGTTCTACCAG CACGTCGCGGGCCAGCAGCGGGCGTACGGAAAGGCGAGTAAAATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15242:3317..4214-

>mRNA_Ecto-sp13_S_contig15242.3948.1 ID=mRNA_Ecto-sp13_S_contig15242.3948.1|Name=mRNA_Ecto-sp13_S_contig15242.3948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15242:3317..4214- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATGGGAGAAAAGGTGCCCGCCCGGGGCCACCATGCTTTTGGCGGA
GAAGCGGAGGGGCGGGTGCCGCGCAGCCGGCTGCGTTGCAGTTGGCGGCG
AGCTCAACGACAGCAATGAACAAGACGAATCAGAGATCCTGCGGGCGGTC
ACGGCCCAACAGATCGCGCTCCTTCAGGCCGCGAAGCCCGCAATGCCCAA
GACGTTCTACCAGCACGTCGCGGGCCAGCAGCGGGCGTACGGAAAGGCGA
GTAAAATGTAA
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