prot_Ecto-sp13_S_contig15237.3944.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15237.3944.1
Unique Nameprot_Ecto-sp13_S_contig15237.3944.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 1.030e-143
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0
Query:    6 KQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 248
            K+AKSENSKIYLRGLPWDT DDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAA KA+ELDGQELGGRWLKIMMSFEKPDHARNGE KVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD
Sbjct:  275 KKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNARAKQGIQSFQGTKKSFD 517          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 244 bits (623), Expect = 6.810e-75
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 0
Query:   14 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 196
            K++++GLPW+T +  +KDFFK  G I +++QP N DGR+SGTAYV FDS  +A KA+ELDG  +G RW+K++++ + P   + GE   KP GC TVFIGNLSW IDEDT+RQTFG+CGDIKSVRFAEDRETG FRGFG+V+FYDG+  D AMKL  SD+MGR +R+DY+APR      FGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPGE---KPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGG 486          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.580e-69
Identity = 107/186 (57.53%), Postives = 139/186 (74.73%), Query Frame = 0
Query:   13 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNG--EAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 196
            +KIY+RGLPW   +++V+DFFK CG+I + + P + +GR+SGTA+V F  + AA K+ E        RWLKI+++ E+      G  + K KP GCTTVFIGNLSW +DED +R  FGECG+I SVRFA DRETG+F+GFGHVEF DGE VDAA+ +A +++ GRP+RVDYAAPRAPR+ SFGGGG
Sbjct:  100 TKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAPDKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 217 bits (553), Expect = 4.460e-64
Identity = 105/184 (57.07%), Postives = 131/184 (71.20%), Query Frame = 0
Query:   14 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 197
            +I+++GLPW   DD+VK+FFK CG I+  + PK+ +GR+SGTAYV+F +     KA ELDG   G RWLKI  + E+P  A+ GE   +P GC TVF GNLSW IDE+++R+ F +CGDI SVRFAEDRETG+FRGFG+V FYDG   D AMKL    V GR IR+DY+APR    D  GGGGR
Sbjct:  332 RIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPGE---RPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR----DRSGGGGR 508          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 6.970e-64
Identity = 94/173 (54.34%), Postives = 128/173 (73.99%), Query Frame = 0
Query:   13 SKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 185
            SKI++RGLPW   +D++++ F  CG+I  VEQP N DGRSSGTA + F SA++A  AVE++G + GGRWL I ++ +KP       ++ KP GC T+FIGNLSW IDED++R+ F ECG+I +VRFAED+ETG+FRGFGHVEF + +    A+ +A +D+MGR +RVDYA  R
Sbjct:  204 SKIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERAPSE-KPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.830e-63
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 0
Query:   14 KIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPR 185
            K+Y+RGLPW   DD+++++F +CG+IV+ E P   DGRSSGTA + F +  A  K + L+G++ GGRWL I  + +KP  A   E   KP  C TVF GNLSW++DEDT+R+TF ECG+I S+RFA DRETGEF+GFGH+EF+  +  DAA+ +A +D+MGR +RVDYAA +
Sbjct:  207 KMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFAAR-ETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 205 bits (521), Expect = 1.810e-59
Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 0
Query:   10 SENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYA 182
            +E +K+Y+RGLPW   + +V++FF ACG I + E P   DGRSSGTA + F++   A  A+EL+G +  GRWL I  S  KP  +   E   K  GC TVF+GNL+W +DEDT+RQ FGECG+I SVRFA DRETGEF+GFGH+EF D E  D A+ +A +D++GR +RVDYA
Sbjct:  272 TEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILSAR-EPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A7S1DDH5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDH5_CYCTE)

HSP 1 Score: 192 bits (488), Expect = 2.240e-58
Identity = 96/178 (53.93%), Postives = 124/178 (69.66%), Query Frame = 0
Query:   21 PWDTPDDDVKDFF-KACGK---IVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGG 194
            PW   +++V+++F  +CG    I+T E P   DGRSSGTA + F S  AA KAVEL+G++  GRWL I  S  KP  A   E   K  GC TVF+GNLSW+IDEDT+++ FGECG+IK VRFA D+ET +F+G+GH+EFY+ E  D AM+LA +D+MGRP+RVDYA  R     SFGG
Sbjct:    1 PWRASEEEVREYFASSCGGVECILTCELPLMNDGRSSGTAIIEFASVEAAAKAVELNGEDFQGRWLNIKYSTPKPIMAPR-EPTQKQDGCVTVFVGNLSWNIDEDTLKEVFGECGEIKMVRFATDKETEDFKGYGHIEFYETEATDKAMELAGTDIMGRPVRVDYANDRRK---SFGG 174          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: A0A485LH77_9STRA (Aste57867_21298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LH77_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.520e-58
Identity = 95/189 (50.26%), Postives = 132/189 (69.84%), Query Frame = 0
Query:    8 AKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGG 196
            A SEN +I++ GLPW   +D++K  F  CG+I ++  P++ +GRS+GT ++TF +AAAA  A+ LDG + GGRW+KI  S EK +H  +     KP GC ++FIGNLSW+IDEDT+R TF  CG I+SVR A DRETG+FRGFGH++F   E VD A+K+  +DV+GR IRV+++  +      F GGG
Sbjct:  186 ATSENCEIFIAGLPWVCDEDELKAVFADCGEITSLRLPQDANGRSTGTGFMTFSTAAAAEAAIALDGSDFGGRWMKIR-SAEKKNHVED-----KPEGCQSIFIGNLSWNIDEDTLRSTFEHCGAIESVRLATDRETGDFRGFGHIDFESSEAVDEAVKMNGTDVLGRAIRVNFSEKK-----QFNGGG 363          
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Match: D0MWU0_PHYIT (Nucleolin, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0MWU0_PHYIT)

HSP 1 Score: 198 bits (504), Expect = 4.080e-57
Identity = 99/183 (54.10%), Postives = 126/183 (68.85%), Query Frame = 0
Query:   15 IYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGR 197
            I++ GLPW   +D+VK+ F  CG++     P   +GRSSGTA+VTF ++ AA  A+ +DGQ+ GGRW+KI  + +K           KP GCT+VFIGNLSW +DE+T+R+TFGECG+I S R A DRETGEFRGFGHV+F   E VD A+KLA S V GR IRV+YA  R    D+ GGGGR
Sbjct:  251 IFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQ-NGRSSGTAFVTFATSEAAEAALAMDGQDFGGRWMKIRTAEKK------NMFDEKPEGCTSVFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYAKSR----DNNGGGGR 422          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15237.3944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI1.030e-14397.94Protein for assembly of pre-ribosomal particles co... [more]
A0A7S2V571_9STRA6.810e-7561.20Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAT4_9STRA1.580e-6957.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UY59_HETAK4.460e-6457.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RIH6_9STRA6.970e-6454.34Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3Q248_9STRA1.830e-6353.49Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KL43_FISSO1.810e-5953.76Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
A0A7S1DDH5_CYCTE2.240e-5853.93Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A485LH77_9STRA4.520e-5850.26Aste57867_21298 protein n=1 Tax=Aphanomyces stella... [more]
D0MWU0_PHYIT4.080e-5754.10Nucleolin, putative n=9 Tax=Phytophthora TaxID=478... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 14..85
e-value: 1.5E-20
score: 84.2
coord: 108..180
e-value: 5.3E-25
score: 99.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..82
e-value: 6.2E-17
score: 61.2
coord: 109..178
e-value: 1.7E-16
score: 59.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 107..184
score: 17.575
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..89
score: 16.33
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..95
e-value: 1.1E-24
score: 89.2
coord: 96..191
e-value: 6.2E-28
score: 99.8
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 11..90
coord: 100..224
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 102..216
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15237contigEcto-sp13_S_contig15237:2458..3948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15237.3944.1mRNA_Ecto-sp13_S_contig15237.3944.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15237 2458..3948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15237.3944.1 ID=prot_Ecto-sp13_S_contig15237.3944.1|Name=mRNA_Ecto-sp13_S_contig15237.3944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
DAKKKKQAKSENSKIYLRGLPWDTPDDDVKDFFKACGKIVTVEQPKNPDG
RSSGTAYVTFDSAAAATKAVELDGQELGGRWLKIMMSFEKPDHARNGEAK
VKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGF
GHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRGGG
RGGGRGGGRGGGRGGGRGGGRGGGGGGGFNARAKQGIQSFQGTKKSFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf