mRNA_Ecto-sp13_S_contig1523.3940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1523.3940.1
Unique NamemRNA_Ecto-sp13_S_contig1523.3940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.300e-81
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK 451
            YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK
Sbjct:   25 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK 151
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A835YUN1_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.220e-64
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            YAFKAA   GLTSV+VRGK+  V+VTQKKVPDRLIDP SVTN+F++TD++GCLMTGM AD+R  VQRLRYEAHEFRFKYGYD P   LARR ADI QVYTQQAS+RALACVA+L+AVDDEKGPQ+FKV
Sbjct:   25 YAFKAASSSGLTSVAVRGKDACVVVTQKKVPDRLIDPASVTNLFRVTDRVGCLMTGMTADARASVQRLRYEAHEFRFKYGYDVPVGTLARRFADICQVYTQQASLRALACVALLVAVDDEKGPQVFKV 152
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A067BYZ3_SAPPC (Proteasome subunit alpha type n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYZ3_SAPPC)

HSP 1 Score: 186 bits (473), Expect = 3.500e-55
Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVRRHTVLWTLRGTTS 496
            YAFKA     LTSV+VRG ++ V+VTQKKVPD+LIDP SVTNIFKIT  IGCLMTG+ AD++  VQRLRYEAH+F  KYGY  P HVLA+R+ADI+QVYTQ ASMRAL  V MLI+VD+EKGPQL+K+      W  + T +
Sbjct:   24 YAFKAVKESSLTSVAVRGAKSCVVVTQKKVPDKLIDPDSVTNIFKITPLIGCLMTGLYADAKAQVQRLRYEAHDFEHKYGYPVPCHVLAKRLADISQVYTQHASMRALGVVTMLISVDEEKGPQLYKIDPAGHFWGYKATAA 165
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A4D9D8R2_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8R2_9STRA)

HSP 1 Score: 198 bits (504), Expect = 6.150e-55
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            YAFKAA   GLTSV+VRGKE   +VTQKKVPDRLIDP+SV+NI++ITDK+G +MTGM  DSR  V RLR EAHEFRFKYGYD P HVLA+RIADIAQVYTQQASMRALA V ML+ VDDE+GPQL+KV
Sbjct:   51 YAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKLGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKV 178
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A6G0XHM2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHM2_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.260e-54
Identity = 93/141 (65.96%), Postives = 110/141 (78.01%), Query Frame = 2 
Query:   32 SRFSLPREDCTK*YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            SR  L    C + YAFKA    GLTSV+VRG ++ V+VTQKKV D+LIDP SVTNIFKIT  IGCLMTG+ AD++  VQRLRYEAHEF  K+GY  P HVLA+R+ADI+QVYTQ ASMRAL  V +LI +D+EKGPQLFK+
Sbjct:   19 SRLQLHPLICLEEYAFKAVKESGLTSVAVRGAKSCVVVTQKKVADKLIDPDSVTNIFKITPAIGCLMTGLYADAKAQVQRLRYEAHEFENKFGYAVPVHVLAKRLADISQVYTQHASMRALGVVTILIGIDEEKGPQLFKI 159
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: K8YP06_NANGC (Proteasome subunit alpha type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YP06_NANGC)

HSP 1 Score: 185 bits (469), Expect = 1.400e-54
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            YAFKAA   GLTSV+VRGKE   +VTQKKVPDRLIDP+SV+NI++ITDK+G +MTGM  DSR  V RLR EAHEFRFKYGYD P HVLA+RIADIAQ    QASMRALA V ML+ VDDE+GPQL+KV
Sbjct:   26 YAFKAANSEGLTSVAVRGKECVAVVTQKKVPDRLIDPSSVSNIYQITDKVGAVMTGMTTDSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQ----QASMRALATVCMLVGVDDERGPQLYKV 149
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A7S2WQZ1_9STRA (Proteasome subunit alpha type n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQZ1_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.170e-54
Identity = 89/128 (69.53%), Postives = 106/128 (82.81%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            YA KAA   GLT+V+VRG  +  MV QKKVPDRLIDP+SVT +++IT+KIGCLMTG+ AD RV V RLR EAHEF+F YGYD P HVLA+RIADI+QVYTQ+AS+R LAC  +L +VDDEKGPQLFK+
Sbjct:   26 YAIKAAENTGLTAVAVRGANSCAMVIQKKVPDRLIDPSSVTYVYQITEKIGCLMTGLTADCRVQVTRLRQEAHEFKFNYGYDMPVHVLAKRIADISQVYTQEASLRMLACNVILSSVDDEKGPQLFKI 153
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: F0W2W5_9STRA (Proteasome subunit alpha type n=2 Tax=Albugo TaxID=65356 RepID=F0W2W5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.810e-54
Identity = 90/142 (63.38%), Postives = 110/142 (77.46%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVRRHTVLWTLRGTTS 496
            YAFKA  G GLTSV+VRG ++ V +TQKKV D+LIDP SVT+IF+IT +IGCLMTGM AD++  VQRLRYEA+EF FK+GY  P +VLA+R ADIAQVYTQ ASMRA   V MLI +DDEKGPQL+K+      W  + T++
Sbjct:   24 YAFKAVQGSGLTSVAVRGMDSCVFITQKKVQDKLIDPESVTHIFQITAEIGCLMTGMYADAKAQVQRLRYEANEFAFKFGYSVPCYVLAKRAADIAQVYTQHASMRAFGVVTMLIGIDDEKGPQLYKIDPAGHFWGYKATSA 165
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: A0A7S2XVL7_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVL7_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.140e-54
Identity = 86/128 (67.19%), Postives = 107/128 (83.59%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKV 454
            YA KAA   GLTS++VRG ET  +VTQKKVPDRLIDP SVT+++++ +KIGCLMTGM AD+RV+VQRLRYEA E+RFK+GYD P HVLARR+AD++QVYTQ A +RA+A   +L  VDDEKGP LF++
Sbjct:   26 YAKKAANSSGLTSIAVRGAETCALVTQKKVPDRLIDPESVTSLYQVNNKIGCLMTGMTADARVVVQRLRYEAAEYRFKHGYDVPVHVLARRLADLSQVYTQHAGIRAMAATTILAGVDDEKGPMLFRI 153
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BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Match: H3G9M2_PHYRM (Proteasome subunit alpha type n=26 Tax=Oomycota TaxID=4762 RepID=H3G9M2_PHYRM)

HSP 1 Score: 183 bits (464), Expect = 7.940e-54
Identity = 88/142 (61.97%), Postives = 112/142 (78.87%), Query Frame = 2 
Query:   71 YAFKAAMGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFKVRRHTVLWTLRGTTS 496
            YAF+AA    LTSV+VRGK+++V VTQKKV D+LI+P SVTN+F+IT +IGCLMTG+ ADS+  VQRLR+EAHEF  K+GY  P HVLA+RIAD+AQVYTQ ASMRA   + ML++VD+EKGPQLFK+      W  + T++
Sbjct:   24 YAFRAAKESTLTSVAVRGKDSAVFVTQKKVQDKLIEPDSVTNVFQITPEIGCLMTGLYADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLVSVDEEKGPQLFKIDPAGHFWGYKATSA 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1523.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPB2_ECTSI1.300e-81100.00Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A835YUN1_9STRA3.220e-6478.13Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A067BYZ3_SAPPC3.500e-5564.79Proteasome subunit alpha type n=4 Tax=Saprolegniac... [more]
A0A4D9D8R2_9STRA6.150e-5576.56PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A6G0XHM2_9STRA1.260e-5465.96Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K8YP06_NANGC1.400e-5473.44Proteasome subunit alpha type n=2 Tax=Nannochlorop... [more]
A0A7S2WQZ1_9STRA2.170e-5469.53Proteasome subunit alpha type n=2 Tax=Rhizochromul... [more]
F0W2W5_9STRA2.810e-5463.38Proteasome subunit alpha type n=2 Tax=Albugo TaxID... [more]
A0A7S2XVL7_9STRA6.140e-5467.19Proteasome subunit alpha type n=1 Tax=Fibrocapsa j... [more]
H3G9M2_PHYRM7.940e-5461.97Proteasome subunit alpha type n=26 Tax=Oomycota Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1523contigEcto-sp13_S_contig1523:3250..8742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score242.3
Seed ortholog evalue1.5e-61
Seed eggNOG ortholog2880.D7FPB2
Preferred namePSMA6
Model size779
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
Exons8
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0182@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-15_004060.2
EC3.4.25.1
Cds size453
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1523.3940.1prot_Ecto-sp13_S_contig1523.3940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1523 5425..7790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.4540908-UTR-Ecto-sp13_S_contig1523:3249..33191681462810.4540908-UTR-Ecto-sp13_S_contig1523:3249..3319Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1523 3250..3319 +
1681462810.4654446-UTR-Ecto-sp13_S_contig1523:5406..54241681462810.4654446-UTR-Ecto-sp13_S_contig1523:5406..5424Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1523 5407..5424 +
1681462810.5239332-UTR-Ecto-sp13_S_contig1523:7790..78421681462810.5239332-UTR-Ecto-sp13_S_contig1523:7790..7842Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1523 7791..7842 +
1681462810.5410736-UTR-Ecto-sp13_S_contig1523:7989..80791681462810.5410736-UTR-Ecto-sp13_S_contig1523:7989..8079Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1523 7990..8079 +
1681462810.5527408-UTR-Ecto-sp13_S_contig1523:8646..87421681462810.5527408-UTR-Ecto-sp13_S_contig1523:8646..8742Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1523 8647..8742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.4745502-CDS-Ecto-sp13_S_contig1523:5424..54991681462810.4745502-CDS-Ecto-sp13_S_contig1523:5424..5499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1523 5425..5499 +
1681462810.4839416-CDS-Ecto-sp13_S_contig1523:5902..59841681462810.4839416-CDS-Ecto-sp13_S_contig1523:5902..5984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1523 5903..5984 +
1681462810.494025-CDS-Ecto-sp13_S_contig1523:6589..67051681462810.494025-CDS-Ecto-sp13_S_contig1523:6589..6705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1523 6590..6705 +
1681462810.506385-CDS-Ecto-sp13_S_contig1523:7208..73181681462810.506385-CDS-Ecto-sp13_S_contig1523:7208..7318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1523 7209..7318 +
1681462810.5144846-CDS-Ecto-sp13_S_contig1523:7720..77901681462810.5144846-CDS-Ecto-sp13_S_contig1523:7720..7790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1523 7721..7790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1523.3940.1

>prot_Ecto-sp13_S_contig1523.3940.1 ID=prot_Ecto-sp13_S_contig1523.3940.1|Name=mRNA_Ecto-sp13_S_contig1523.3940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MGPGLTSVSVRGKETSVMVTQKKVPDRLIDPTSVTNIFKITDKIGCLMTG
MIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMR
ALACVAMLIAVDDEKGPQLFKVRRHTVLWTLRGTTSLTRPRLRAARSRRP
*
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mRNA from alignment at Ecto-sp13_S_contig1523:3250..8742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1523.3940.1 ID=mRNA_Ecto-sp13_S_contig1523.3940.1|Name=mRNA_Ecto-sp13_S_contig1523.3940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5493bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:3250..8742+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTAGGGACTCGAACTATGACCACCAGATCACGGTTTTCTCTCCCCA
GGGAAGATTGTACCAAATAGGTGAGGAGAGGACGCGCACTGTGCGTTGCT
TGGAAGATCGCGCTTGGGGAGCAGCAGATGGTCCAAGGCCTGAAGCAGCA
GCACGTCGACGATGATGTTTACTGGCTTGCAGTGATGGAAGACGGCGGGG
CATTGCTATTGCATCAATGGTACTTTGCCGAAGGTCTATACAGATTATGC
TGGTAATGACAGCTTGTTTCATGCTGGTGTCCTCCTATCGAAAGAACCCT
CGGTATTTGTCTTGCCTCGGTATTTGTCTTGGTTTTAGTATGCAGGGTTG
CCCGCGGTTGCTTCATCCGACGCGCACCGGCTCTCGGGTGTAGGTCATGA
TATTTAATATTCCTGTCGTGTCAGATGTCCACAAGAACAGACAACCCGGG
ACGCGTACGTTGGGCAAAGAAACAAGATAGAGGCCACCAACCCAGGGTAA
GAGGAAGCAGTGGTTCAGCGCACTGCTGCCTGTTGCCGACAAACACTGCC
AGACAACCTCGGCCTCCCCACGCTCCACCGCCGTATGTAGCCACCTGTGG
AAGCACACGCCACCATTGGGTAATCGATGAAGCGACGTAACAGCACCGTT
GAATCCAGCGTTCTTTCTAGAGCCGCCGGCAGTCGTGGGACTTCGGGGTT
GCTTCGCGCCACAAGCCACCAGCGCAAACATCATTAATAGTACGGCGCCA
TTCCCAACTAAATACGCACCATGTGTCGTACGCACGCACTCCGGTGCCAT
CTCCCCGACCGGTACGGTAGTAGTGATACTAGTGTAGGCATACCCACACA
CACGGTCTTCTTCACACAATATTTGACAATGTTATTGATCAGTACAGCAT
CACACCGTTGTCAGCGGTAGTCGCGGTTCCGATGTGAGAGGGTTACACGT
TGCCAAGAGGAGGTGCTCCCACGTAAGGGGGGTCGCAAGTGGATGTCACG
GACTCGACGCGCTGTTGGGAAAGTAGGGTATTCCCTTATTCGGGTGTAAG
AGGGGGGCTCCGATATAGTAAGAGGGCCGAGGGCTTTCGTCGCGCCACCC
TCCTTGCCCCCGGCCCTCCTATTATGTCGGAGCCACGAGTGTACTGTACT
CTGTATCCCCGCGTGGAAAAACTGCTGTCCACGATCGCAGCGATCACCGA
GTTGTACAGTCGTAGGTCCTCTATGAGGCGGGCTACAATACAAGGCGAGT
TAACCCGCTGTAGCGCTTTCGTCGCGCCACAATCCTTGCCCCCGGCCCTC
CTTTTATGTCGGAGCCACGAGTGTACTTACTCTGTATCCCCGCGTGGTAA
ACTGCTGTCCACGATCGCAGCGATCACCGAGTTGTACAGTCGTAGGTCCT
CTATGAGGCGGGCAACAATACAAGGCGAGTTAACCCGCTGTAGCGCAGGT
GAAATTGGCTGGCACAGACGGAATATCCAAGTTGTAGTTACACATCGTAT
AATGCGGCTGCCATGTAAGGGCGGGTGAATCGGTCTGGCGTACCCCCGCC
TAGTAGCGGGCCTACGACTGTACACAAGTTAGCAGGAGCAGCCGGCACCC
ACCACTAGCAGTCCCGCTTGTGCTTGACCCACCTCGGAGATTCTCGAGCG
TCTTCGTGTCCGCCTGGCACGCCGCCGCGGGCAAGTAGAGTGTGGTGAAA
ATCTTAATCTTGGCTTGCTCTTGCCTCTCTACTCGAAAGGCGCAAACCAA
ATTTGGCACCTGCGGCACGCCAGAGTGCGTTATACCTTGGATGTCGATCA
TCTCTCCCTCCAGACATGCCTCTATCGGTTGTCCTTCTTTAGAAAACAAC
GCAGCATCACAGGAAGACACCCGCTCAAAATAATTCTTGGAGACGACGTG
TTGGAAAGTCTTTGCGACAGTGAGAATTGGGGGCAAGCTGTTGGATACTC
GACATGTGGAGTCTGTGAATGTCTTTACACTGAGAAACCATGGTTGCTAG
CCTGTATTGCTTGACTTTCTTGCTCTCTTCATCATCTCATTATTTTCCTC
TCTCCACCACCGTGTCTCTGTCCGCCTGTTTTTTGTCTCTTGTGTCCCTT
AACGCCCCGCTCTCTCTCCCGCTCTGCATTGCGTTCTCTTTTGACATCCG
AGTAGAGTATGCGTTCAAGGCGGCGATGGGGCCGGGCTTGACGTCAGTGT
CCGTGAGGGGAAAGGAGACGAGCGTCATGGTTACCCAGAAAAAAGTGCCG
GTGAGAAACCGACACATTTTTTTTCAAAGCATGACAACCGACATACGAAG
TGGGTGGTACAAATGCTGTGATTGTTGATATGAAATGGAAAAAAAAAGGA
TACATAGCCGATAACGCCCCGTCCTTTTGAAGAAAACAGCCCCGGTGAGT
AACGGAAAACTACATCGAAGTAATTGCATAGTAACCGATAACGTCCCTTC
CTCTGAAACCCCGTTTTTATTGCCGGATTCCTCCGCCGTGTACATTTTGT
CGATGGTGCTCCTTGCGGCGTTAGAAGCGCTGTGTGGCATGGCTGCGAGC
CTTTGAAATCATCCAACAGTTTACAACGTACCGTGTTCGTACATAAACCT
CTCTTTGTACAACTTTTCCCTCGCGGCGTCCTCGAAATCGTCTCCTCGCC
CAGGATCGGTTGATCGACCCTACCTCGGTGACGAACATCTTTAAGATCAC
CGACAAGATTGGCTGTCTCATGACAGGCATGATCGGTGAGGGCTCGATTT
AGTTTTGGTTGTGGCGTGTACGGTGCTCTGCCGCGATACCGTTCGGACGC
GCGAGGCCTGACGACAGCTTCGCCGCGCCGCCGTGGCACACCCACCCGCC
TGTCGCACCTTGGTGCCTGCGCAGCCTGTCCCTCTGTGTTTTTCTCCCAC
ATGTCGTCGTACGGAATGGGCCGATCCATTGGGCTTGTTCGTCGTAGCAG
CCGGGACGGATGCACCTCTGGCTGTCTCGTAGCTGGTGATATCACGCTTC
GTCCGTTTTTGTCCGCAACGGACGGATTAATGGTGTGAATAGATACCCTT
GGACGGAAACACCTGAAACGTCTCCTCAACATAGGGCACGCCTGCCTGGA
CGCATGTTGAATCGTTGGCCCGGTTGCCCGTCGGCTGTCTCAGACTGCTC
TTTGCTGAACAAGCCTTTATTTATTACGGAAGCACCGCGCCACTTTCTTC
GTTGCTGCTGCTACTCCTGCTGCTACTGCTCCTGCTGCTGCTGATGATTA
CTACTGCTGCTGCTGTTGATGATTATTACAGTTGGTGCTGTTGCTGCTGC
TGTTGCTGCTGATAATGATTATGAAAATGATGATGCACAGCCGACTCGAG
AGTGTTGGTGCAGCGGCTGCGGTACGAGGCCCACGAGTTCCGGTTCAAGT
ACGGCTACGACTGCCCGGCGCACGTGCTGGCCAGGCGCATCGCCGACATC
GCGCAGGTGCCAACCGTGGTCTTTGACCACCGCTGCATGACGGTGACTGT
TATGACTGTCGGTGGCGACGTGCGTGAACGGTGGCGGATGGCTGCTGTAG
ACGGTGATGACCGCACTTAAGCACCTCAAGTTTTTGCCAAGGCTGGGGTT
CTTCTTTCCTAGGGTTATGCTACGAACGGCCGCTACATGGGCTTTTGGGC
TTCTTAATCGAGCTCACAAACCCTAACCCTAACCCTAGGTCAAGTTCTAG
ATATTGAGTTTTTTGAGGCTATACAAGTATTGATTTCTGGACTGACAAGT
TCCTAAGTGCTTTCATAGCGCTAACGATGGACTTTTGGCGCGCGTGGCTG
TGGGCACGTTACGCGGAGCCGGTCTTGACTCGGCAGTGAGCGGGTAACAT
GTTCGATCTTCTTTCGTTCAACTCCCTCCCTCCCAACCACCTTGTGTTTG
TGCTGTGACTGACCTGTTTTTTTTTTTTTTTTTCGGCCATCGCCTCGATT
CTCGCGCAGGTGTACACTCAGCAGGCGTCCATGCGCGCCCTCGCGTGTGT
AGCGATGCTGATCGCCGTCGACGACGAGAAGGGACCTCAGCTCTTCAAGG
TGCGTCGGCATACAGTACTGTAATTTTTGGCAGTCTAGTAGGTGTACGTT
TAGCCGGCAAAATGCAGCGAAAATAATTTGAGAAAGGGTTGCGGGGGGGG
GGAGGATACGGAGGTGCTCCTGCGAGATCAATAGTAGGGGGGTGCAGTCG
GAGGTGGTGTTCCTGATAAGGGCGTGTTTCGTTCCTTGCCTCCGAGCAGG
GCAGAGGCCGAGATTGAAGTCAGTGCCCTTGTTGAGATGTTCGTGCCTCG
CTCCGTTGCGTACGTGGGGATATGTTCCCGGTCGCTTCGCCCAACCGCTC
CTCTTGTCTCATTATCTCATGCGACCCGTGTTCCGCGTGGTGCTCTGACG
TGTGTGTATGTGCCATGTCAACCCATCCTCTGTCGTGACCCTTGCCGTGT
CCTGACGTGCAAAAAAAATAGGTGGACCCTGCGGGGCACTACTTCCCTTA
CAAGGCCACGTCTTCGGGCAGCAAGGAGCAGGAGGCCATGAACTGGTTGG
AAAAGAAGGCGAGCTTAGGCATAGCAACAATTGCATGAAACAAGTGCTGT
TCGGGTTCTTGTGGCGTTCATTATTTTTCATGTCCTAACCGCTCGCTCTT
GCTGGTCGCTTTAAAGATTGTATGCGTGTGGTGCTGCTGCTGACGGTCCT
CTTCTTCTCTTGCGATGCTGTCTTTCGCTTTTTTTGTCAGGTGGATGGGT
TGATGGAGATGGACGAAGATGCTACGATACGCTGTGCCATCCAGTGCCTT
CAGGCCGTCACCGACTTCAGGGGGAACGAGGTACGCATGGGTTGTGTTTT
GTATGCGTGCGTATTTCTTTGATTACAGCCCCGCGCTACATGCAACATCC
GACTTGGCCAAATACGAGGCTGCAGTTTTCGCGGGTAAAGTAGGCTAGGT
TTTCTGTTTAGTTTGCCCCCTCCCCCCCTGACGGAGGAGACTCGGTTCAG
CCTGCGACTTTACACTCGAAGAGTACCCAAGGGTCCTCCAGTGGGAGGTA
TCCGCTCGCCTTCATCAGGCCTGTGCATGTGTTCTTTCTTGTGTTGTTCC
GATTGTAACGGTGGTGGTTTTGGTTGTTGCACTGCACTGCTTTATACCCG
TCTGAGTGCTGTTGTTGTTGCTCCAAAGCATCACGTTTGCTCGGAGAAAA
CATTTTTTTCTTCTTTATGTCGCTGTCGGCGTACCTACTACTTCGGGTCC
GGCCACAGCAACGCATCTACTGCCGTGGAGCTCATATCTTTAGTCCTAAG
AGAAAGCAACGAATACAAATCTACTTTGATTGGCGAGACCCCCCATTTGA
CCCCCTCCTCTTCCTTTCTTTTGGCGTACGTTTGTGGGTGGTTACAGGTG
GAGGTGGGGGTGGTGTCTGGCAAGGGGCGGTTCAAGACTCTGGATGAGGA
CTCCATCGAGGCGCACCTTGTCGCCATCAACGAAATGGAGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1523:3250..8742+

>mRNA_Ecto-sp13_S_contig1523.3940.1 ID=mRNA_Ecto-sp13_S_contig1523.3940.1|Name=mRNA_Ecto-sp13_S_contig1523.3940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1523:3250..8742+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCCGGGCTTGACGTCAGTGTCCGTGAGGGGAAAGGAGACGAGCGT
CATGGTTACCCAGAAAAAAGTGCCGGATCGGTTGATCGACCCTACCTCGG
TGACGAACATCTTTAAGATCACCGACAAGATTGGCTGTCTCATGACAGGC
ATGATCGCCGACTCGAGAGTGTTGGTGCAGCGGCTGCGGTACGAGGCCCA
CGAGTTCCGGTTCAAGTACGGCTACGACTGCCCGGCGCACGTGCTGGCCA
GGCGCATCGCCGACATCGCGCAGGTGTACACTCAGCAGGCGTCCATGCGC
GCCCTCGCGTGTGTAGCGATGCTGATCGCCGTCGACGACGAGAAGGGACC
TCAGCTCTTCAAGGTGCGTCGGCATACAGTACTGTGGACCCTGCGGGGCA
CTACTTCCCTTACAAGGCCACGTCTTCGGGCAGCAAGGAGCAGGAGGCCA
TGA
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