mRNA_Ecto-sp13_S_contig15228.3938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15228.3938.1
Unique NamemRNA_Ecto-sp13_S_contig15228.3938.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.820e-116
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVGV 609
            DRAAFSQRVREHI+EDLNNMGFALVSYTVNQVLDS GYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVGV
Sbjct:  130 DRAAFSQRVREHIQEDLNNMGFALVSYTVNQVLDSQGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVGV 331          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 1.120e-110
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADA 579
            DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKN+SEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADA
Sbjct:  108 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNMSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADA 299          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A6H5JYR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 5.930e-64
Identity = 128/148 (86.49%), Postives = 129/148 (87.16%), Query Frame = 1
Query:  187 VSEAKKRVAENESSANMAEATYRAEAHVGV------------------AMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKAD 576
            +SEAKKRVAENESSANMAEATYRAEAHVGV                  AMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRA AD
Sbjct:    1 MSEAKKRVAENESSANMAEATYRAEAHVGVGHVAVQGMSPSRGSFNQVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRATAD 148          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A7S1DX43_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DX43_HEMAN)

HSP 1 Score: 160 bits (405), Expect = 8.270e-43
Identity = 106/212 (50.00%), Postives = 137/212 (64.62%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVGVAEAAAILAKG 639
            DRAAFS+RVRE + +DL  MGF LVSYTV  + D  GYME+LGATQT LVKREAAEG ++N +EA+K+VA+ ++ A +A A    EAH+ V  +       DRDL IK+AA++ +VN A A A  A  IEK RQ Q +VR        EA V L++   +    +K+ EG S A L+ EKNKAEA+R  A A+A +I  +G AEAAA  A G
Sbjct:  193 DRAAFSERVRELVHDDLKAMGFELVSYTVTHIDDENGYMESLGATQTELVKREAAEGRARNQAEARKKVAQYDADAEIATAEAAREAHIAVNQQQXXXXXXDRDLHIKQAAFETQVNKARAEAEAAGKIEKERQQQNIVRXXXXXXXXEAQVHLEITDRQVERTKKEAEGQSLAELLAEKNKAEAVRVNAQAQADQIRMIGEAEAAAKQAAG 404          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.590e-38
Identity = 90/186 (48.39%), Postives = 129/186 (69.35%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAI 561
            +R+AFS +VREH+ EDL+ MG+ L SY V ++ D + YM++LG TQTA+VKREAAEGE+KN +EA+K+VA  ++ A+ AEA     AH+ V ++ E+ AA+DRDL +KKA Y  EVN A A A  A  IE ARQ Q +VRE+TKQ   E  + L++        +K+ EG S A L++++N+A++I
Sbjct:  140 NRSAFSTKVREHVLEDLSAMGYGLASYVVQKIDDDSEYMQSLGVTQTAIVKREAAEGEAKNTAEARKKVAVYKAEADTAEAIEFQRAHLAVNLQKEQEAASDRDLNLKKAMYDREVNQARAEATAAGPIEDARQQQHIVRERTKQEQVEQGIKLEIADQIVERTKKEMEGASMARLLQQQNEAKSI 325          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A2R5GCP0_9STRA (Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCP0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.170e-38
Identity = 96/197 (48.73%), Postives = 134/197 (68.02%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEI 594
            +R+AFS++V+EH+ +DL  MG+ L SY V QV D+  YM +LG TQTA+VKREAAEG +KN +EA+KRVA  ++ A+MAEA     AHV V  + E  A +DRDL +K+AAY  EVN A+A A  A  IE+ARQ Q++VRE T+Q   E  + L++        +K+KEG S A L+EE+N A++I   A A+A ++
Sbjct:  479 NRSAFSEKVKEHVLDDLRAMGYGLASYVVQQVDDANDYMVSLGVTQTAIVKREAAEGSAKNEAEARKRVAAYKADADMAEAIEFQRAHVAVNQQKEAEAESDRDLHLKRAAYDREVNQAQAEAESAGPIEEARQQQSIVRENTRQLQVEESIKLEIADQIVERTKKEKEGESLARLLEEQNHAKSITVIAKAEADKV 675          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 1.590e-37
Identity = 93/201 (46.27%), Postives = 132/201 (65.67%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVG 606
            DRAAFS+RVREH+ EDL ++G  L SYTV  + D  GYM+ALGAT T+ VKREA EG ++NV+EAKK V+   + A +AEA     AH   A++ +  A ADRDL +K++ Y +EVN A   A  A  IE+A Q + V+RE T+Q+ EEA V+L V   +    + +  G S+A L+E++N A++I   A+A+A  I ++G
Sbjct:  130 DRAAFSERVREHVVEDLKSLGITLASYTVTNIGDENGYMDALGATATSAVKREAEEGTARNVAEAKKVVSRTMADAAVAEAEAMKMAHNAKALQGQAMAEADRDLELKRSRYASEVNKAREEAEAATRIERAIQNKAVIRETTQQQVEEAQVLLLVTEQQVARQKAELAGASEAKLLEQRNIAKSIEVAAEAEAGRIRRLG 330          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A7S3LS19_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LS19_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.310e-35
Identity = 92/192 (47.92%), Postives = 125/192 (65.10%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADA 579
            DR AFS  VR+H+ +DL +MGF LVSYTVN + D++ YM +LG TQTA+VKREAAEG+++N SEAKK+VAE  + A +AEA    EAHV VA +             KKA+++ EVN A A A  A  IE ARQGQ V+RE+T+Q   E  + LD+        +K+KEG++ A  + + +KA+A+R  A A
Sbjct:  150 DRQAFSASVRDHVFDDLASMGFKLVSYTVNDISDNSDYMLSLGITQTAIVKREAAEGKARNESEAKKKVAEYTAQARIAEAHALREAHVVVAQQXXXXXXXXXXXXXKKASFEREVNQARAEAEAAGPIESARQGQAVIREKTRQIEAEEKIKLDIADQTIAREKKEKEGMAFADKLAQTHKADAVRILAQA 341          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: A0A7S3LRV4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LRV4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.170e-31
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQ 438
            DR AFS  VR+H+ +DL +MGF LVSYTVN + D++ YM +LG TQTA+VKREAAEG+++N SEAKK+VAE  + A +AEA    EAHV VA +             KKA+++ EVN A A A  A  IE ARQGQ V+RE+T+Q
Sbjct:  150 DRQAFSASVRDHVFDDLASMGFKLVSYTVNDISDNSDYMLSLGITQTAIVKREAAEGKARNESEAKKKVAEYTAQARIAEAHALREAHVVVAQQXXXXXXXXXXXXXKKASFEREVNQARAEAEAAGPIESARQGQAVIREKTRQ 294          
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Match: C1FEY3_MICCC (Flotillin-like n=2 Tax=Micromonas TaxID=38832 RepID=C1FEY3_MICCC)

HSP 1 Score: 123 bits (308), Expect = 1.800e-29
Identity = 92/201 (45.77%), Postives = 120/201 (59.70%), Query Frame = 1
Query:    4 DRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVG 606
            DRA+FS+RV+E +  DL  MGFALVSYTV +V D  GY+ ALGATQTA VKREA EG++KN S+A+                 +  + V         A + RDL +K+  ++ EVN A A A  A  IE A Q Q VV++QT Q+ EEA VML V   E    + + EG S A LIE+KN AE+ R  A+A+A+E  Q+G
Sbjct:  128 DRASFSERVKELVDPDLLGMGFALVSYTVTEVDDREGYITALGATQTASVKREAEEGKAKNESQARIXXXXXXXXXXXXXXXXKRTSTVRANEFAASEAESMRDLQMKQQGFQKEVNEATARAEAAIRIETAIQNQKVVKQQTLQKVEEAEVMLQVTEREMERAKAEAEGASGAKLIEQKNNAESRRVAAEAEAYEKQQLG 328          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15228.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I4_ECTSI1.820e-11699.01PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I5_ECTSI1.120e-11099.48PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JYR0_9PHAE5.930e-6486.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1DX43_HEMAN8.270e-4350.00Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2S6C3_9STRA4.590e-3848.39Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GCP0_9STRA6.170e-3848.73Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7R9SVU7_9CHLO1.590e-3746.27Flotillin-like n=1 Tax=Polyblepharides amylifera T... [more]
A0A7S3LS19_9STRA3.310e-3547.92Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3LRV4_9STRA2.170e-3153.79Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
C1FEY3_MICCC1.800e-2945.77Flotillin-like n=2 Tax=Micromonas TaxID=38832 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15228contigEcto-sp13_S_contig15228:194..4221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score351.3
Seed ortholog evalue3.2e-94
Seed eggNOG ortholog2880.D7G1I4
Preferred nameFLOT2
Model size642
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Exons6
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
Cds size642
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15228.3938.1prot_Ecto-sp13_S_contig15228.3938.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15228 194..4221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.3121836-CDS-Ecto-sp13_S_contig15228:193..2411681462810.3121836-CDS-Ecto-sp13_S_contig15228:193..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 194..241 +
1681462810.325501-CDS-Ecto-sp13_S_contig15228:687..7551681462810.325501-CDS-Ecto-sp13_S_contig15228:687..755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 688..755 +
1681462810.3368914-CDS-Ecto-sp13_S_contig15228:1603..16431681462810.3368914-CDS-Ecto-sp13_S_contig15228:1603..1643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 1604..1643 +
1681462810.3463335-CDS-Ecto-sp13_S_contig15228:2379..24961681462810.3463335-CDS-Ecto-sp13_S_contig15228:2379..2496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 2380..2496 +
1681462810.362837-CDS-Ecto-sp13_S_contig15228:3147..34501681462810.362837-CDS-Ecto-sp13_S_contig15228:3147..3450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 3148..3450 +
1681462810.3720546-CDS-Ecto-sp13_S_contig15228:4155..42211681462810.3720546-CDS-Ecto-sp13_S_contig15228:4155..4221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15228 4156..4221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15228.3938.1

>prot_Ecto-sp13_S_contig15228.3938.1 ID=prot_Ecto-sp13_S_contig15228.3938.1|Name=mRNA_Ecto-sp13_S_contig15228.3938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
QDRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTAL
VKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRA
AADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEE
ALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQ
VGVAEAAAILAKGE
back to top

mRNA from alignment at Ecto-sp13_S_contig15228:194..4221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15228.3938.1 ID=mRNA_Ecto-sp13_S_contig15228.3938.1|Name=mRNA_Ecto-sp13_S_contig15228.3938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15228:194..4221+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATCGTGCAGCATTCTCCCAGCGCGTGCGAGAGCACATCAAGGAGGT GGGTCCTGTGATTTGGAAAGTAGGATGACACCCATTTCGCACGGCCTGCC CTCGCTCATGCATGTCCTGGGATAGGAATTACGCCTTTTCATTGGTCAGC CGGTTAACGCAGCTGACGTAGAATTTACGGACACACAAGCAATGTCGCCC AAGTCTTTTTCAGGCGTTGGAAATCACTCTCGACACTGCCCACCCCATCT GTTCCGCGCTGTACTGAATCCCCCCCCTAGCCTCCCACGTGATGACCAGC TTCTGGTACATCCCTTGTGAAAAGTTGGCTGGACCGGTGAAGACCCGGCA TTTCGCTCCATCCCTGTATCTTAGGGATGTGAGGTCAATGATCTACCGAC TTTAGCACGCATTAACTGCGTACACCCCCGCGTGCCCCCCATGCTCTCCT TTCGCGCTTGTGATCGACGTGAAACCCCACTTTCCGAACCGTAGGACCTG AACAACATGGGTTTCGCTCTCGTGTCCTACACCGTGAACCAGGTCCTCGA CTCCACAGGATAGTGAGTGTCGGCTCATTTTCTCGGCTCTCCCAAGAATT TTTTGTTTTGCAGACGATATGCCACATGCCAGCTCCTCAAGTCCGTGCGA CAATCGCATTCTCTGTTCTCCAGCACAAAATACTTTCACGTGAAAACAGG CGTGAATTTTTCCCGAGAACAAAGTAATGGCGTACCCAAAGCTCGGCTAA GATATAGTTTTATGGAGGGCGAGTCGCTTTCTGCGCTGGGTTGAGTTTCT TGGGGGGGGGGGTACGCATACACGAATGTCTCGTCTTCGAGATCGATATC GCTTGGAGGCGTTGTTGTCTCGGGGTGTGCTGTCTCGTTTCGACCGATCC AGCGCTCTTTACACTACAAGCGTTTCGTTTGGCCCTGGGTGATGCCGATA TAGTGCGGTGCGACTGGAGTAAATTTCGTAGCAGGTGAGGGCTTGTCGTG TCAGTTAGGGGTAGCTCAATGTTTGGAATTCCACAGCGTATACCCCGACC TTGCTTCCCTGCTCGGGCTTCTTTTTTCCCGCCACGAAACGATGCCTACC CTGTGATCGTGTGTTGATGACCTAGCGTCATCGACTTCTCTCTACCGTCG AGCGTGATCTTTGTCCTATATTAATGCGTTGGGTGGGCTTTTTGGTCATT CTCCTTTCTTGTGGTCGAACTCGGTTTCTATGCTCTCTGCCTCGTGTGCG TGTCCTGCTGTCTGACTCTTTCCTGTCTTTCGGTCTGTCTGCCTCTCTGC CTCTCTTCTGTGCTCCATCATCTCTCCTTCGGAACGCCATCTCGGCTCGT TGATGGGTACCCCCCTCCTTGAATGGATGGCATGCTATGCCATCGCTTGT AACCTTGCAGCATGGAGGCCCTCGGTGCAACTCAGACTGCACTTGTGAAG GTACAGCTGTTTTGTCGTTGTTTGACATAGTGGCGTGCGACTGCAAGCGA CGTTGCATTGCTGTATTCAAACCACTTCATATCGTCGCTGCACTTTCGGG TCTTTTTGTGCCCGATGCGTCCCTGTGGAAGGGTACGTCACGAAGTTGTT TTATTCGGGAAACATGTTCTGTTGCGCCTCGGTAGACTACCCTCTCTTCG TTTCACGGTTGGCCACTTCTCACCCAGTTCGCGCGGACGTTTCCATGGGC CGGAGAGGCACCGACCCGCCGCGCCAGTGTCGAGTTTGATGGCTCACTCT GGCCTATCAGTGTGCGGTTCCTCTCACCTTCTCTGCGTCGCAACGGGGTT GCCACCCGAGAACGTGGGAGCACGAGGACACCCGCGACGAGTCCGGCGCT CTTTCTTTCGACGGCCGTCCTTCGCCCTGACGTCTTCCGCCTAAACGCCT TCCGCCCTAACGTCTTCCGGCCGAACGTCTTCCGTACTATCGTATTTCGC CCCAACATCCAACGGTTGTCTTCACCATGTTTTGTTCATCGCCGTCCTGC TGTAGACACAAGGTTTGTCTTGGTCTCTGCGAGGGACCGTTTTCGATCCG AACGCGAGAAGCCGCGGGCGATGAAAGCAAGCAACGCGCTGCTTTCAACG CGTTGCTTCCATGCTCGCTCCAATCGACATCTACAGTTGCATCACAAGTT CTCTGCCCATCTCGCTCCCATGTTGCCGTTTCGCAGCGCGAAGCCGCGGA AGGTGAGAGCAAGAACGTCTCCGAGGCCAAGAAGCGCGTGGCCGAGAACG AGAGCTCCGCCAACATGGCCGAGGCTACCTACCGTGCGGAGGCACACGTC GGGGTGGGTGCATTCTTGGTGCCGCCCACGCGCAGACCTCGGAAGATTTA GCCTATTCTTGAATGTAAATCGGCCACTTGTGCAGGGCAGCGCATGGCTT ATCGACAACCCCTATTGTCAGGAGCGCGCTGTTCAGGGCAGGCCGCCTTT GCCGGTACAGTAGCGGCTACCAGTCGAGGCGCGGGTGTACCACCGAGCGA TTTGGTAGTCGCTATCGCAGGGCACGTGGCTGTACAGGGCATGTCGCCAA GCAGGGGTTCGTTCAACCAGGCCCACCACTGAAATGTGTCCAATGTATGC TGGTAGTGCTCATGGTCCCGATGATCAAAAGCCCCTACATCGCTCTGAGG GGTTTTCTCTGGAAACCCGTCTATTTAGTGGCGTAATAGGAGGCGAACGT GGGTAGTACCAGGAAGGGATAGACACCACACAAGGAAAAATGTTATTGGT TGGACAGGTTGCTTTCCGTGTGGATCTATCTGCCTCCAGACCCCTGGACC GTTCAAGTTGTTGCCAGGTACGTAGGCGGTGGGTAAGACATGCTACCTAC GCTGTTGTTTTTAAGCATTGGGCTACGTTCACGAGGCGCACGCCGATAAC TTGAGCGTTGCACCTGCGACAATTCACAACAACCTCGAATCGCCATATGT TCAGGTGGCCATGGAAGACGAGAAGCGGGCAGCGGCTGACCGAGACCTAG CCATCAAGAAGGCTGCCTACAAGGCCGAGGTTAATCACGCGGAGGCCACC GCGGCGGTAGCGTTCGACATCGAGAAGGCCCGGCAAGGGCAGACGGTGGT GCGAGAGCAGACGAAGCAGAGGGCCGAGGAAGCCCTGGTGATGCTGGACG TGCAGGGCACGGAGGCCTTGACGATGCAGAAGCAGAAGGAGGGTGTCTCG AAGGCGATGCTCATCGAGGAGAAGAACAAGGCCGAGGCCATCCGCGCGAA GGCCGACGTGAGCATTTCGGGGGAACTGGCCGTATGGTGTCGCTGTTTAG TCGTGGGGCAGGCTAGAAGAGGAGTTCTGACCGCCGTGGCTTGTGTAGCA TATTTCCCTGTTAGTGCGTCGAGGGCACGCTCCCTTGGAGGGTGATACTC TTTCCATATGGCAGGGTCGAGCCGTGCGCCGTACATCCGAATGCGTTTAG CAGGCATATGCGCCGCCTCCTCTAGTCGCGAAACTTGCCGCCCGGCATGA CATTGTGTCCGTTTTGTTCCCCGGAGAACTCCTTGCTGCTTGCGGTTCGG CGCGGAGGCCACGAACGAAAACCGGTCGCCCCGAAGATTCCCGGGCCGGT CGATGTTTCTCACAAGCTCTTGGTCCTTTGGACTGGCCAGGCAACTCTGC TTTTTACAGGATTTTTCCGTCCAGGCGGTTTGCGATCGTCGAAAGCGAAC GTGAACTATGCAAACAAGCGGAGAACCTTGGTCGTTCCCACGCAGAGGGC TGTTCGAGGGGGGGCACATATGCAATTGTAGCTTAAGGGAAGAACGGCAC CGCGGGGTGGAGGTCTCCTTACACGCAGGTGAATGCTGCCGCAATGGTGG CTGTGGCGAGCCGCTCCAATCAAATGTGCGGGCTCCTCGCCGCCCACTAC GATCGCCCCCCGTTTTCCGCCATTAACGCGTGCTGTCGAACGTACCTGTA CGCGTTTCCCAGGCGAAAGCGCACGAGATCAACCAAGTCGGTGTGGCAGA AGCGGCGGCCATTCTGGCGAAGGGAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15228:194..4221+

>mRNA_Ecto-sp13_S_contig15228.3938.1 ID=mRNA_Ecto-sp13_S_contig15228.3938.1|Name=mRNA_Ecto-sp13_S_contig15228.3938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15228:194..4221+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATCGTGCAGCATTCTCCCAGCGCGTGCGAGAGCACATCAAGGAGGA
CCTGAACAACATGGGTTTCGCTCTCGTGTCCTACACCGTGAACCAGGTCC
TCGACTCCACAGGATACATGGAGGCCCTCGGTGCAACTCAGACTGCACTT
GTGAAGCGCGAAGCCGCGGAAGGTGAGAGCAAGAACGTCTCCGAGGCCAA
GAAGCGCGTGGCCGAGAACGAGAGCTCCGCCAACATGGCCGAGGCTACCT
ACCGTGCGGAGGCACACGTCGGGGTGGCCATGGAAGACGAGAAGCGGGCA
GCGGCTGACCGAGACCTAGCCATCAAGAAGGCTGCCTACAAGGCCGAGGT
TAATCACGCGGAGGCCACCGCGGCGGTAGCGTTCGACATCGAGAAGGCCC
GGCAAGGGCAGACGGTGGTGCGAGAGCAGACGAAGCAGAGGGCCGAGGAA
GCCCTGGTGATGCTGGACGTGCAGGGCACGGAGGCCTTGACGATGCAGAA
GCAGAAGGAGGGTGTCTCGAAGGCGATGCTCATCGAGGAGAAGAACAAGG
CCGAGGCCATCCGCGCGAAGGCCGACGCGAAAGCGCACGAGATCAACCAA
GTCGGTGTGGCAGAAGCGGCGGCCATTCTGGCGAAGGGAGAG
back to top