prot_Ecto-sp13_S_contig15226.3936.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15226.3936.1
Unique Nameprot_Ecto-sp13_S_contig15226.3936.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length103
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 7.440e-53
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0 
Query:    1 AAVAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 103
            AAVAVPTPTATGEDKAGRVSPSSD+WPSSAHGKRGSNGV GVVTAEGGV AAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQD+LKEFGSA EFSL
Sbjct:  294 AAVAVPTPTATGEDKAGRVSPSSDMWPSSAHGKRGSNGVGGVVTAEGGVVAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSASEFSL 396
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.230e-51
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0 
Query:    3 VAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 103
            VAVPTPTATGED+AGRVSPSSD+WPSSA GKRGSNGV GV  AEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQD+LKEFGSAPEFSL
Sbjct: 1641 VAVPTPTATGEDRAGRVSPSSDMWPSSARGKRGSNGVGGVAAAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSL 1741
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: A0A835ZB96_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB96_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.940e-11
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 0 
Query:   50 GAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 103
            GA+ ++RLAL  WWPLLTGL+   GD RLD R+AA+STL+D+L+++G+ PEF +
Sbjct:  741 GASRRARLAL--WWPLLTGLSECQGDSRLDQRSAAISTLRDLLRDYGALPEFDV 792
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJ76_9PHAE7.440e-5395.15DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LFA1_ECTSI1.230e-5193.07BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A835ZB96_9STRA6.940e-1157.41SEC7 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15226contigEcto-sp13_S_contig15226:474..1047 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15226.3936.1mRNA_Ecto-sp13_S_contig15226.3936.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15226 472..1047 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15226.3936.1 ID=prot_Ecto-sp13_S_contig15226.3936.1|Name=mRNA_Ecto-sp13_S_contig15226.3936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
AAVAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVG
AAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPE
FSL
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