mRNA_Ecto-sp13_S_contig15226.3936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15226.3936.1
Unique NamemRNA_Ecto-sp13_S_contig15226.3936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 7.440e-53
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 AAVAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 309
            AAVAVPTPTATGEDKAGRVSPSSD+WPSSAHGKRGSNGV GVVTAEGGV AAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQD+LKEFGSA EFSL
Sbjct:  294 AAVAVPTPTATGEDKAGRVSPSSDMWPSSAHGKRGSNGVGGVVTAEGGVVAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSASEFSL 396
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.230e-51
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    7 VAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 309
            VAVPTPTATGED+AGRVSPSSD+WPSSA GKRGSNGV GV  AEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQD+LKEFGSAPEFSL
Sbjct: 1641 VAVPTPTATGEDRAGRVSPSSDMWPSSARGKRGSNGVGGVAAAEGGVGAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSL 1741
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BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Match: A0A835ZB96_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB96_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.940e-11
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  148 GAAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPEFSL 309
            GA+ ++RLAL  WWPLLTGL+   GD RLD R+AA+STL+D+L+++G+ PEF +
Sbjct:  741 GASRRARLAL--WWPLLTGLSECQGDSRLDQRSAAISTLRDLLRDYGALPEFDV 792
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15226.3936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJ76_9PHAE7.440e-5395.15DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LFA1_ECTSI1.230e-5193.07BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
A0A835ZB96_9STRA6.940e-1157.41SEC7 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15226contigEcto-sp13_S_contig15226:472..1047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score187.2
Seed ortholog evalue3.9e-45
Seed eggNOG ortholog2880.D8LFA1
Model size311
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
Cds size309
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.2723572-CDS-Ecto-sp13_S_contig15226:473..5031681462810.2723572-CDS-Ecto-sp13_S_contig15226:473..503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15226 474..503 -
1681462810.2828782-CDS-Ecto-sp13_S_contig15226:768..10471681462810.2828782-CDS-Ecto-sp13_S_contig15226:768..1047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15226 769..1047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15226.3936.1prot_Ecto-sp13_S_contig15226.3936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15226 474..1047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15226.3936.1

>prot_Ecto-sp13_S_contig15226.3936.1 ID=prot_Ecto-sp13_S_contig15226.3936.1|Name=mRNA_Ecto-sp13_S_contig15226.3936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
AAVAVPTPTATGEDKAGRVSPSSDVWPSSAHGKRGSNGVSGVVTAEGGVG
AAEQSRLALQLWWPLLTGLARGAGDPRLDCRAAALSTLQDILKEFGSAPE
FSL
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mRNA from alignment at Ecto-sp13_S_contig15226:472..1047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15226.3936.1 ID=mRNA_Ecto-sp13_S_contig15226.3936.1|Name=mRNA_Ecto-sp13_S_contig15226.3936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15226:472..1047- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCTGTCGCCGTCCCGACCCCGACAGCGACGGGAGAGGACAAGGCCGG
AAGGGTTTCACCCTCGTCCGATGTGTGGCCGTCGTCGGCACACGGAAAAA
GGGGATCGAACGGTGTTAGCGGGGTGGTGACCGCAGAGGGCGGGGTCGGG
GCGGCGGAGCAATCTCGACTCGCCCTTCAGCTATGGTGGCCGCTCCTGAC
GGGGTTGGCAAGAGGCGCGGGTGACCCGAGGCTAGACTGCCGCGCGGCGG
CCCTTTCAACCCTTCAGGATATATTGAAGGTGAGGTCGTTTTGTACGGGC
CTCTTGCCTGCTGCTAACGTTGTTATGTCGTCGCCTTGTCGTTTGTCTCG
AGTCCTGGTTTTTCATGCAGCCCGGCAACGATGGGGTGACCTGTTGCGGC
CTTGTGTTTGTACCACTACCACCACCGCTACTTCGCTTTTTGACCACTGT
TGTTGGTTCTTCCGCCTCCGACCCTTCGCGCCTCCCCGGCCGTCTCCGAT
TTTTCTCCGGCCGGTCCGGTCGCACTTTGTCCCCGCATCCGAAGGAGTTC
GGATCTGCCCCGGAGTTCTCCCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15226:472..1047-

>mRNA_Ecto-sp13_S_contig15226.3936.1 ID=mRNA_Ecto-sp13_S_contig15226.3936.1|Name=mRNA_Ecto-sp13_S_contig15226.3936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15226:472..1047- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCTGTCGCCGTCCCGACCCCGACAGCGACGGGAGAGGACAAGGCCGG
AAGGGTTTCACCCTCGTCCGATGTGTGGCCGTCGTCGGCACACGGAAAAA
GGGGATCGAACGGTGTTAGCGGGGTGGTGACCGCAGAGGGCGGGGTCGGG
GCGGCGGAGCAATCTCGACTCGCCCTTCAGCTATGGTGGCCGCTCCTGAC
GGGGTTGGCAAGAGGCGCGGGTGACCCGAGGCTAGACTGCCGCGCGGCGG
CCCTTTCAACCCTTCAGGATATATTGAAGGAGTTCGGATCTGCCCCGGAG
TTCTCCCTC
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