prot_Ecto-sp13_S_contig15223.3935.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15223.3935.1
Unique Nameprot_Ecto-sp13_S_contig15223.3935.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length110
Homology
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.620e-19
Identity = 51/82 (62.20%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   24 MRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAG 105
            MR SVPVLGTGAG                             REEYGVSPDVVSYNTAMAA NEARQHLRALSTFEDMQAAG
Sbjct:  278 MRRSVPVLGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEYGVSPDVVSYNTAMAACNEARQHLRALSTFEDMQAAG 359          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A6T6SDA8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6SDA8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-10
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 0
Query:    1 YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLR-ALSTFEDMQAAGVSPDT 110
            Y   I+AC + G+WE A+S+ D MR      G    PDV  +N+ M+  A++G  E+ + L  +M     V PDVVS+NT +AA    ++HL  AL  F+ M+   V P+T
Sbjct:   18 YTDMISACVKCGKWEVAVSVFDCMRRR----GGKISPDVVAYNAAMNAYANSGIPEKSINLFVDMVSSK-VKPDVVSFNTVIAACIGGQEHLNMALEVFQAMRDVRVHPNT 123          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A2G5C9H9_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5C9H9_AQUCA)

HSP 1 Score: 56.2 bits (134), Expect = 7.010e-7
Identity = 33/106 (31.13%), Postives = 59/106 (55.66%), Query Frame = 0
Query:    3 AAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSP 108
            A ++  ++ G WE A  + +E+             ++FT+NS++ GM S G+CE  + L  ++  E  ++PD VS+N  ++ F+   + + A S F+ MQ AGV+P
Sbjct:  275 ALVDMYSKCGSWELAYKIFNELE---------GYRNLFTWNSMISGMFSNGQCESAVQLFEQIESEE-MAPDSVSWNAMISGFSLWDKGVEAFSYFKKMQLAGVTP 370          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A0A1Y1IE79_KLENI (Putative Pentatricopeptide repeat domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE79_KLENI)

HSP 1 Score: 53.1 bits (126), Expect = 8.590e-6
Identity = 29/104 (27.88%), Postives = 52/104 (50.00%), Query Frame = 0
Query:   10 QSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGE---CERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSPDT 110
            QS  +  +  + +EMR  VP       PDV  FN+++  +  +     CE++ + ++     +GV PD+VSYNT M+ +     + +  +    MQ A + PD+
Sbjct:  322 QSSAFWRSFEMLEEMRRHVP-----GRPDVRDFNNLLGNLLRSRRPIPCEKVFLKMSISEGNFGVEPDIVSYNTLMSCYAREGHYRKVEALLVQMQRAHIEPDS 420          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: D7FXC1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-5
Identity = 31/64 (48.44%), Postives = 31/64 (48.44%), Query Frame = 0
Query:   24 MRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNE 87
            MR SVPVLGTGAG                              EEY VSPDVVSYNTAMAA NE
Sbjct:  271 MRRSVPVLGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEYEVSPDVVSYNTAMAACNE 334          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: UPI00053C9E9B (pentatricopeptide repeat-containing protein At4g01570 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9E9B)

HSP 1 Score: 51.6 bits (122), Expect = 2.990e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    1 YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMASAGECERLLVLLAEMR 66
            YN  I A    G+ +TALSL  EM+    V GT AGPDV T+NS++H +   G+ +  L++  E++
Sbjct:  249 YNICIYAFGCWGDLDTALSLFREMKEQGSVSGTSAGPDVCTYNSLLHVLCLLGKVKDALIVWDELK 314          
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Match: A6RAM3_AJECN (Uncharacterized protein n=7 Tax=Histoplasma TaxID=5036 RepID=A6RAM3_AJECN)

HSP 1 Score: 50.8 bits (120), Expect = 5.730e-5
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 0
Query:   43 NSIMHGMASAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFEDMQAAGVSPDT 110
            N +++  A+ G   +    L  +R E+ +SPDV S+N  + A  +AR    ALSTF++M A G+ PD+
Sbjct:  486 NPLIYVNAAVGRVYQARKQLERLRSEFSLSPDVTSWNIVLTAHAKARDKPGALSTFQEMIATGLKPDS 553          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15223.3935.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L8D4_9PHAE3.620e-1962.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T6SDA8_9EUKA1.160e-1037.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2G5C9H9_AQUCA7.010e-731.13Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A1Y1IE79_KLENI8.590e-627.88Putative Pentatricopeptide repeat domain containin... [more]
D7FXC1_ECTSI1.980e-548.44PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
UPI00053C9E9B2.990e-540.91pentatricopeptide repeat-containing protein At4g01... [more]
A6RAM3_AJECN5.730e-536.76Uncharacterized protein n=7 Tax=Histoplasma TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..26
e-value: 2.9E-5
score: 22.0
coord: 76..110
e-value: 1.2E-6
score: 26.3
coord: 40..75
e-value: 4.0E-6
score: 24.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 37..80
e-value: 1.3E-8
score: 34.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..25
e-value: 9.1E-5
score: 22.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..27
score: 8.89
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 38..73
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..108
score: 10.326
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..110
e-value: 3.0E-26
score: 94.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15223contigEcto-sp13_S_contig15223:2862..3689 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15223.3935.1mRNA_Ecto-sp13_S_contig15223.3935.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15223 2862..3689 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15223.3935.1 ID=prot_Ecto-sp13_S_contig15223.3935.1|Name=mRNA_Ecto-sp13_S_contig15223.3935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
YNAAINACAQSGEWETALSLADEMRHSVPVLGTGAGPDVFTFNSIMHGMA
SAGECERLLVLLAEMREEYGVSPDVVSYNTAMAAFNEARQHLRALSTFED
MQAAGVSPDT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf