mRNA_Ecto-sp13_S_contig1522.3934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1522.3934.1
Unique NamemRNA_Ecto-sp13_S_contig1522.3934.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1522.3934.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.560e-39
Identity = 90/112 (80.36%), Postives = 92/112 (82.14%), Query Frame = -1 
Query:    4 GFDGAAGPAASGNPKRRRDEREGSGDGGRGAGQRGGRAPAAGANSDDEPLDEQVGKNALELARRRAALGEEGTGASGVGGKRSSDGGGVVSRGRAASRKPAEDPERAHDDDG 339
            GFDGAAGP  SG+                 AGQ GGRAPAAGANSDDEPLDEQVGKNALELARRRAALGEEGTGASGVGGKRSSDGGGVVSRGRAASR+PAEDPERAHDDDG
Sbjct:  179 GFDGAAGPTTSGDXXXXXXXXXXXXXXXXXAGQLGGRAPAAGANSDDEPLDEQVGKNALELARRRAALGEEGTGASGVGGKRSSDGGGVVSRGRAASRQPAEDPERAHDDDG 290
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BLAST of mRNA_Ecto-sp13_S_contig1522.3934.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.950e-16
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = -1 
Query:   25 AAGANSDDEPLDE---QVGKNALELARRRAALGEEG-TGASGVGGKRSSDGGGVVSRGRAASRKPAEDPE 222
            AA ANSDD P+DE   Q GKNAL LARRRAAL EE  TGA GVGGKRSSDG  VVSRGRAASR+PAEDPE
Sbjct:  229 AASANSDDVPVDEIKSQTGKNALGLARRRAALEEETKTGARGVGGKRSSDGXXVVSRGRAASREPAEDPE 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1522.3934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG49_9PHAE2.560e-3980.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ0_ECTSI1.950e-1678.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1522contigEcto-sp13_S_contig1522:13236..13670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size436
Hectar predicted targeting categorymitochondrion
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462810.0513725-CDS-Ecto-sp13_S_contig1522:13235..136701681462810.0513725-CDS-Ecto-sp13_S_contig1522:13235..13670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1522 13236..13670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1522.3934.1prot_Ecto-sp13_S_contig1522.3934.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1522 13236..13670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1522.3934.1

>prot_Ecto-sp13_S_contig1522.3934.1 ID=prot_Ecto-sp13_S_contig1522.3934.1|Name=mRNA_Ecto-sp13_S_contig1522.3934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
ITVVVVRAFGVFRRLSRRRPPPRHHAAAITRPLPAHAARTSPFLSESGSA
ARELQRVLPHLLVQGLVVAISARCGGAPAPLAGASAPVPAALAFVTPSLG
VSASGRTGGAVEASLARRPFFFFFFFVIFKRRRRRGYRRFPCRLD
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mRNA from alignment at Ecto-sp13_S_contig1522:13236..13670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1522.3934.1 ID=mRNA_Ecto-sp13_S_contig1522.3934.1|Name=mRNA_Ecto-sp13_S_contig1522.3934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1522:13236..13670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCACCGTCGTCGTCGTGCGCGCGTTCGGGGTCTTCCGCCGGCTTTCTAG
ACGCCGCCCGCCCCCTCGACACCACGCCGCCGCCATCACTCGACCTCTTC
CCGCCCACGCCGCTCGCACCAGTCCCTTCCTCTCCGAGAGCGGCTCTGCG
GCGCGCGAGCTCCAGCGCGTTCTTCCCCACCTGCTCGTCCAAGGGCTCGT
CGTCGCTATTAGCGCCCGCTGCGGGGGCGCGCCCGCCCCGTTGGCCGGCG
CCTCGGCCCCCGTCCCCGCTGCCCTCGCGTTCGTCACGCCGTCTCTTGGG
GTTTCCGCTAGCGGCAGGACCGGCGGCGCCGTCGAAGCCTCTCTTGCGAG
GCGACCCTTCTTCTTCTTCTTCTTCTTCGTCATCTTCAAGCGCCGCCGCC
GCCGCGGCTACCGCCGCTTTCCTTGCCGCCTCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1522:13236..13670+

>mRNA_Ecto-sp13_S_contig1522.3934.1 ID=mRNA_Ecto-sp13_S_contig1522.3934.1|Name=mRNA_Ecto-sp13_S_contig1522.3934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1522:13236..13670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCACCGTCGTCGTCGTGCGCGCGTTCGGGGTCTTCCGCCGGCTTTCTAG
ACGCCGCCCGCCCCCTCGACACCACGCCGCCGCCATCACTCGACCTCTTC
CCGCCCACGCCGCTCGCACCAGTCCCTTCCTCTCCGAGAGCGGCTCTGCG
GCGCGCGAGCTCCAGCGCGTTCTTCCCCACCTGCTCGTCCAAGGGCTCGT
CGTCGCTATTAGCGCCCGCTGCGGGGGCGCGCCCGCCCCGTTGGCCGGCG
CCTCGGCCCCCGTCCCCGCTGCCCTCGCGTTCGTCACGCCGTCTCTTGGG
GTTTCCGCTAGCGGCAGGACCGGCGGCGCCGTCGAAGCCTCTCTTGCGAG
GCGACCCTTCTTCTTCTTCTTCTTCTTCGTCATCTTCAAGCGCCGCCGCC
GCCGCGGCTACCGCCGCTTTCCTTGCCGCCTCGAT
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