mRNA_Ecto-sp13_S_contig15218.3932.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15218.3932.1
Unique NamemRNA_Ecto-sp13_S_contig15218.3932.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15218.3932.1 vs. uniprot
Match: A0A6H5K5Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y6_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 2.580e-139
Identity = 206/224 (91.96%), Postives = 213/224 (95.09%), Query Frame = 3 
Query:    3 TTSAFVVAPVALRDGTKLSASPDAPRGWACNHETAAAYSSGCLRRSGTCEGGGGRMTMMTSVPPPGKGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDKTPLVAHNFEIAEKRVGDVLTDAPMIGLLQEKQEEARDASPEPSSPVILISGFTNPELKDFVTRFRSETGVRAAFAKAVPNAMTKSVARLCGEIAQDHADAIAGKLSGAKE 674
            TTSAFVVAP ALRDGT+LSAS D+PRGWACNHETAAAYSSGCLRRSG CEGGGGR+TMM S PPPG+GKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDRED+TP VAH  EIAEKRVGDVLTDAPMIGLLQEKQE ARDASPEPSSPVILISGFTNPEL+DFVTRFRSETGVRAAFAKAVPNAMTKSVARLCGEIAQDHADA+AGKLS  KE
Sbjct:   21 TTSAFVVAPAALRDGTRLSASLDSPRGWACNHETAAAYSSGCLRRSGACEGGGGRITMMMSGPPPGRGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPFVAHTLEIAEKRVGDVLTDAPMIGLLQEKQE-ARDASPEPSSPVILISGFTNPELRDFVTRFRSETGVRAAFAKAVPNAMTKSVARLCGEIAQDHADALAGKLSSGKE 243
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BLAST of mRNA_Ecto-sp13_S_contig15218.3932.1 vs. uniprot
Match: D8LIT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT4_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 2.240e-91
Identity = 142/152 (93.42%), Postives = 146/152 (96.05%), Query Frame = 3 
Query:  219 MGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDKTPLVAHNFEIAEKRVGDVLTDAPMIGLLQEKQEEARDASPEPSSPVILISGFTNPELKDFVTRFRSETGVRAAFAKAVPNAMTKSVARLCGEIAQDHADAIAGKLSGAKE 674
            MGGTEDAQSFGPRCILASGLSLEER AIRSILDD+DQDRED+TPLVAHN EIAEKRVGDVLTDAPMIGLLQEKQEEARDASPEPSSPVILISGFTNPEL+DFVTRFRSETGV AAFAKAVPNAMTKSVARLC EIAQDHADA+AGKLS  KE
Sbjct:    1 MGGTEDAQSFGPRCILASGLSLEERRAIRSILDDKDQDREDRTPLVAHNLEIAEKRVGDVLTDAPMIGLLQEKQEEARDASPEPSSPVILISGFTNPELRDFVTRFRSETGVGAAFAKAVPNAMTKSVARLCEEIAQDHADALAGKLSDGKE 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15218.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Y6_9PHAE2.580e-13991.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIT4_ECTSI2.240e-9193.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15218contigEcto-sp13_S_contig15218:56..2413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size767
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionUncharacterised conserved protein UCP014543
Ec32 orthologEc-20_001430.1
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15218.3932.1prot_Ecto-sp13_S_contig15218.3932.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15218 146..2246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.9648392-UTR-Ecto-sp13_S_contig15218:55..1451681462809.9648392-UTR-Ecto-sp13_S_contig15218:55..145Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15218 56..145 -
1681462810.019466-UTR-Ecto-sp13_S_contig15218:2246..24131681462810.019466-UTR-Ecto-sp13_S_contig15218:2246..2413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15218 2247..2413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.9757526-CDS-Ecto-sp13_S_contig15218:145..2901681462809.9757526-CDS-Ecto-sp13_S_contig15218:145..290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15218 146..290 -
1681462809.9868596-CDS-Ecto-sp13_S_contig15218:760..8611681462809.9868596-CDS-Ecto-sp13_S_contig15218:760..861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15218 761..861 -
1681462809.9993854-CDS-Ecto-sp13_S_contig15218:1276..14511681462809.9993854-CDS-Ecto-sp13_S_contig15218:1276..1451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15218 1277..1451 -
1681462810.008008-CDS-Ecto-sp13_S_contig15218:2157..22461681462810.008008-CDS-Ecto-sp13_S_contig15218:2157..2246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15218 2158..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15218.3932.1

>prot_Ecto-sp13_S_contig15218.3932.1 ID=prot_Ecto-sp13_S_contig15218.3932.1|Name=mRNA_Ecto-sp13_S_contig15218.3932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MTMMTSVPPPGKGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILD
DEDQDREDKTPLVAHNFEIAEKRVGDVLTDAPMIGLLQEKQEEARDASPE
PSSPVILISGFTNPELKDFVTRFRSETGVRAAFAKAVPNAMTKSVARLCG
EIAQDHADAIAGKLSGAKE*
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mRNA from alignment at Ecto-sp13_S_contig15218:56..2413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15218.3932.1 ID=mRNA_Ecto-sp13_S_contig15218.3932.1|Name=mRNA_Ecto-sp13_S_contig15218.3932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2358bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15218:56..2413- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAACCTCTGCGTTCGTTGTCGCCCCAGTAGCACTTCGTGATGGAACG
AAGCTAAGCGCTTCTCCCGATGCTCCTCGAGGATGGGCTTGCAATCATGA
GACAGCAGCGGCATACAGCAGCGGTTGCCTTCGGAGGTCGGGCACGTGCG
AAGGAGGAGGTGGGCGCATGACGATGATGACGTCTGTCCCACCCCCAGGC
AAGGGGAAATTCGTAAAGATGGGAGGGACAGAGGATGCGCAGAGCTTCGG
GCCAAGGTGAAGCTATACACCGGGGAAGGCGTGACGACGTCGTGAGTTCA
CAGCAATGTATTCAAATAGTAGATGGAACCTCAACATTCAGATTTTTGGC
TTGAAGTTCCAGCCGTCAGCAGTTGGTTGCATGCATGTGGCGTTCGTAAC
GTTTGTTTGACGTGTGATTTACTCAGCAGAACAGGCGGGGCCGCATTTTG
AATACAGGCACTTAAGGCCTTGCACCGAGGCAGCCTACTAAGGTGTTTTT
TCAGCGGCTGTGGAACAACTATCACACAGTATGTGCGGTGTGGGGACTAA
ATTTACGAATATGCAGCACCTTCATAGAGCATTATGTGCCGTATACCGCA
AGATCTTGGGAGAGAGGGGATGGATGGGCTTCTGCCGGCTTTCGAAACCC
TCGTGAAACCGTCAACCTTGTACAATACGCAGGTCTTCTCGCTGACTTGA
AGGCCACCAATTTTGGGTGCGCACTAAAGTGCATTTGAACAAAAACGTAG
AGAGTCCTATCCGATCCGCACACTCTGACCGCTGTCCATCCATTGCTGTG
GATGTGACCAATACCGTTAGCCAACGACCCTAGGGGTAACTCAGGCCCTA
CAGAACTCCCAGAAAGACCGTATGGAGAGCAGGAGCAAACACAAGTCATC
TGTGGAGATTCTGTGGAATCCGAGCAGTGAAGTTCTGTCTTCGCTTGCTC
TCGGGTATTCAGGTGTATTCTCGCAAGTGGCCTCTCCCTGGAGGAGCGCG
GGGCAATACGCTCGATTCTTGACGACGAGGATCAAGACCGGGAGGACAAA
ACACCTTTGGTGGCGCATAACTTCGAAATAGCGGAGAAGAGGGTGGGAGA
CGTCCTAACCGACGCGCCGATGATCGGTCTGCTTCAGGTAGCGACAAAGG
GGTGTCTAATGCGGGTTTTCTTGTACAGCAGCACGCAATTTTGTTGCACT
TCTTCGTGCAGACTGGACGCATCGCCACCCGGCAGGAAACAGGCCTCTTC
CGCATGTGTCTTCCAGACCAGTATTCCAGTATGTATGTGAATATGATGCT
CGTGTTCCCTCATGCTCGCCGCAAGGGAGATTTGTCCTGAAGAAAAGTCG
ACAACGATTTTGCGATTGCGGATGCCATGTGTACCCGCGAAGCCATGCTG
GAAGGTGACATCGTGTTCGCCAAAAACGACATCAGTTTCAGGCAGAACCG
TATGTTTTCCGAGGCTCCGTGACTACTCAGTAAATCCAGAATCACTACAC
AGTCGTCGTTACTTTCCACCCGTAATCCCTGCCGTGGTCTGTGAACGCCC
AGGAGAAACAAGAGGAGGCCAGGGATGCCTCGCCAGAACCGTCTTCGCCG
GTGATTCTGATCAGCGGTTTCACCAATCCAGAACTGAAAGACTTTGTGAC
ACGGTAGGGAACCAGTGTTTCACACATTACACTTTACTTTTTAGTCCAGT
GCTGAGGCATATATCCGGGAGCGTCGAGTTGATTTTGCTTTCTTTAGGAT
CGCGTTTGTGGTGTTGGGTTTTCCTTTGCAGCTCCTCCGCCCGGTAAACG
CAGGCTGCACATATTTTGGTGTTTTCAGCGTTTCGTCGAAGACGGTCCCA
CGTACAATTTTCTATCGCACGTGGCAACACCCAAACTGTCGATTTCAATC
CATGACGGTGGTGAGACGTGTAGTTCGGATCAATTTCTCTCGTGTGTCTG
GCCCAAAGTTTACGCTCTACAATATAGTGAGTGAGGCAAATGAGTCATGT
CACTACTTTTGCGTCTGCCAACGCCGTCGACCACCATCGTCCGTAAGAAA
CATGCTAAAGGTTATGACCGCCTCCTCTGTTTGCCGTTTGCTGCTACTGG
GTATTCGGGGACTGCCGCAACAGGTTTCGCAGTGAAACGGGGGTTCGCGC
TGCATTTGCCAAGGCTGTTCCAAACGCCATGACGAAGTCGGTGGCTAGAT
TGTGCGGGGAGATTGCTCAAGATCACGCTGATGCTATCGCGGGGAAACTG
TCCGGCGCCAAAGAATAAACGAACAGAGCATGTGGCGTCGTACAAGTCAG
ACTTCAGAGCGCAACACAAGTCAACCGCGAGACTGTGCGATGGGAATGGT
TACAAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15218:56..2413-

>mRNA_Ecto-sp13_S_contig15218.3932.1 ID=mRNA_Ecto-sp13_S_contig15218.3932.1|Name=mRNA_Ecto-sp13_S_contig15218.3932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15218:56..2413- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATGATGACGTCTGTCCCACCCCCAGGCAAGGGGAAATTCGTAAA
GATGGGAGGGACAGAGGATGCGCAGAGCTTCGGGCCAAGGTGTATTCTCG
CAAGTGGCCTCTCCCTGGAGGAGCGCGGGGCAATACGCTCGATTCTTGAC
GACGAGGATCAAGACCGGGAGGACAAAACACCTTTGGTGGCGCATAACTT
CGAAATAGCGGAGAAGAGGGTGGGAGACGTCCTAACCGACGCGCCGATGA
TCGGTCTGCTTCAGGAGAAACAAGAGGAGGCCAGGGATGCCTCGCCAGAA
CCGTCTTCGCCGGTGATTCTGATCAGCGGTTTCACCAATCCAGAACTGAA
AGACTTTGTGACACGGTTTCGCAGTGAAACGGGGGTTCGCGCTGCATTTG
CCAAGGCTGTTCCAAACGCCATGACGAAGTCGGTGGCTAGATTGTGCGGG
GAGATTGCTCAAGATCACGCTGATGCTATCGCGGGGAAACTGTCCGGCGC
CAAAGAATAA
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