mRNA_Ecto-sp13_S_contig1521.3928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1521.3928.1
Unique NamemRNA_Ecto-sp13_S_contig1521.3928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1521.3928.1 vs. uniprot
Match: D7FMI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI5_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 6.450e-95
Identity = 148/155 (95.48%), Postives = 149/155 (96.13%), Query Frame = 1 
Query:    1 MASGPSWMQRDQ--GEGLTAADGGISADGTNEPNARYGAIKAEMTDTNAMRFGFRVASLALGLMMIIAAFTELLNLSSFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLL 459
            MASGPSWMQRDQ  GEGLTA DGGI ADGTNEPNA YGAIKAEMTDTNA+RFGFRVASLALGLMMIIAAFTEL NLSSFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLL
Sbjct:    1 MASGPSWMQRDQLQGEGLTATDGGIGADGTNEPNASYGAIKAEMTDTNAVRFGFRVASLALGLMMIIAAFTELWNLSSFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLL 155
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BLAST of mRNA_Ecto-sp13_S_contig1521.3928.1 vs. uniprot
Match: A0A7S2SJU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJU5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.110e-10
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:   91 PNARYGAIKAEMTDTNAMRFGFRVASLALGLMMIIAAFTELLNL----SSFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLL 456
            P + YG++++       +R   R+  + + +MM  A    L NL    S  T   ++ Y +LFA VL LHE   +   + V+  +R+ FG ++  +G+  F++FIAFLNF LTD+G     TG+ L
Sbjct:   28 PPSNYGSMESSSNARLYVRAAIRLVVVGMCVMMSAAGALSLANLDNSNSVVTDVIVSCYVMLFASVLFLHEVNEMRRIELVESILRKNFGFLFKPLGKGCFMVFIAFLNFGLTDSGELGLATGICL 153
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BLAST of mRNA_Ecto-sp13_S_contig1521.3928.1 vs. uniprot
Match: A0A4D9DAG1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAG1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.890e-8
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  157 RVASLALGLMMIIAAFTELLNLSSFT--TFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLL 456
            R  ++ L  +M  +A   +L ++     TFF+ALY  + A +L   E         +D   RR FG +YG  G+AL+IIFIAFLNF L   G     TG++L
Sbjct:   56 RFVNMGLACLMAFSAVNGILKIAQLQLDTFFVALYMFISAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGILQFATGIVL 157
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BLAST of mRNA_Ecto-sp13_S_contig1521.3928.1 vs. uniprot
Match: A0A7S3NGQ3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGQ3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.410e-6
Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   19 WMQRD-QGEGLTAADGGISAD-GTNEPNARYGAIKAEMTDTNAMRFGFRVASLALGLMMIIAAFTELLNLSSF--------TTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTD 420
            W+  D +G+G   A   ++ D G  +P         E      + +GFR+    L  MM   A T +L+L+ F        + F I+ Y +LFA V    E+  ++  D   + ++R FG ++  +G+A+FIIF+AFLNF + +
Sbjct:   10 WLHDDYRGDGTQEAVSPMTGDTGLRQPQTN------EFGSKPMVIWGFRIVHFGLATMM---AATGILSLTEFGRVNRNQLSAFVISFYLILFAVVWFAFETMFIMPIDYFIFHLKRNFGFLFHPLGKAIFIIFVAFLNFGVQE 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1521.3928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMI5_ECTSI6.450e-9595.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SJU5_9STRA1.110e-1033.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9DAG1_9STRA1.890e-837.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3NGQ3_9STRA7.410e-629.86Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1521contigEcto-sp13_S_contig1521:12320..16804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-23_000440.1
Cds size462
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1521.3928.1prot_Ecto-sp13_S_contig1521.3928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1521 12320..16804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.714876-CDS-Ecto-sp13_S_contig1521:12319..123661681462809.714876-CDS-Ecto-sp13_S_contig1521:12319..12366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 12320..12366 +
1681462809.7243319-CDS-Ecto-sp13_S_contig1521:13525..136121681462809.7243319-CDS-Ecto-sp13_S_contig1521:13525..13612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 13526..13612 +
1681462809.733408-CDS-Ecto-sp13_S_contig1521:14301..143771681462809.733408-CDS-Ecto-sp13_S_contig1521:14301..14377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 14302..14377 +
1681462809.7468224-CDS-Ecto-sp13_S_contig1521:14920..150071681462809.7468224-CDS-Ecto-sp13_S_contig1521:14920..15007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 14921..15007 +
1681462809.7586765-CDS-Ecto-sp13_S_contig1521:15417..154911681462809.7586765-CDS-Ecto-sp13_S_contig1521:15417..15491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 15418..15491 +
1681462809.7697423-CDS-Ecto-sp13_S_contig1521:16713..168041681462809.7697423-CDS-Ecto-sp13_S_contig1521:16713..16804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1521 16714..16804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1521.3928.1

>prot_Ecto-sp13_S_contig1521.3928.1 ID=prot_Ecto-sp13_S_contig1521.3928.1|Name=mRNA_Ecto-sp13_S_contig1521.3928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MASGPSWMQRDQGEGLTAADGGISADGTNEPNARYGAIKAEMTDTNAMRF
GFRVASLALGLMMIIAAFTELLNLSSFTTFFIALYNLLFAGVLILHESQG
LIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGL
LLL*
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mRNA from alignment at Ecto-sp13_S_contig1521:12320..16804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1521.3928.1 ID=mRNA_Ecto-sp13_S_contig1521.3928.1|Name=mRNA_Ecto-sp13_S_contig1521.3928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1521:12320..16804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGGTCCGTCTTGGATGCAACGAGATCAAGGCGAGGGACTGTG
AGTTCCATGGATGGGCTTTAGTGTCGAAGTTCGAACCTCGAAGCTGGTTT
GGTGCGTGGTTCAACGATCAATGTACCAGTAGGAGTAAACTGCGTATGTA
TGCCCCCGTCACTAGCATTGTCCTGTTGGGGGCAGAGAGGAAACCAGGAA
GAGGTGGGATGCTGGTCATAAACTTCTTCACGAGAACGGGGAGGCTCTGT
CAACGTTCTTTGCGTTGTCAAAGCCGTGCCACACAGAAGTGTATCAACGA
GGTTACGCCGCATCGAAAAGTGTCCCAAGTCCCGTGTGTTTCAAGCTGCA
GTATTTACGTCACCTTTTACACGAGTTCGCGGATGTGTTCATCCTCTCTT
CATAGTAGTGCAGGCCTCTTGCGCTTACAGCCCAAACTGAGCTTGTGCAT
TGTTTCCTCGACCCATTTTGTATCATGTCGTGTGACATGCTCGTCCTGAT
ACGCAAGATCAAATACCGTTGCAGTCAAAATAGCTGTGTGCACACAAAAC
CGCTCATGCGTGACGGGCAAACGCCATCGTGTGTATAGCTCGCCAACTTG
CCTACGAGAAGCTCAAAGCAGTAGTGGAGCCTACAGCCTCGAAGATTTGA
TTGCAAGCGTGTCTTTGTGAGGCTAGCACCGCGCGCCGACATGAAGTGAT
CTGGATTCCAACCGCCGTTCCCAGAGCTCACTGGTTCCTGGGGTAGCAAA
AACGTCTCCGTTCCGAAAGGAAAGTAACCGTAGCACTGGTCGTAGGCACA
GTACCCAACATCAGGACTATTTATCAACTACCAGCTCCATGGGGTAACCC
GTGCTCTAGTGGGTTAGTCATCCCAGCTGATCCTACAAGAGCCACTGCTG
CTCCCAGCATTTATTTGATACATTCACGAACCTGCGGGGACACCACGGCA
GCAGCATCCTACATGTATGTAGCGCCACGTACCGTAAGAAATGTCACGCG
CGCTTGGAACTTGTCTTGCTTCCTTTAGCCTACCGTATACTCCTTAGCGT
TTTTTAATCAGGGTTTATTCTCCGTCTTGCAGTTGTCGTTTGCGGCTTAT
TGCACCAATCAGTGGATGCACGCTTCTGCCGGCACTGCTGTGAAAAACTG
CTAACTAATCTCCTGAAGATATTCCGCGCGATTCGTGCTGCCTGTTTGTA
TGATAGTACGGCAGCGGATGGAGGCATTAGCGCTGATGGCACGAACGAAC
CAAACGCAAGATACGGCGCAATCAAGGCAGAGATGACGGACACGTGAGTG
GAGCTGGCCGCCACTGCTGTGCTCGAATCACATGCGCAGCCCACTGTCGG
CGTCGTTTCCACCCCGCCGGCAAAATGGCACCACGATTGATGGCATGTGG
TTTCGGTACAACGTGTTAGACACAACAAGTGGTTGGATTTCGTTATTATG
GTTGCGGGAGAGGTAGTTCTCATCCCATGCTTTCGATTCCCATTTGACCA
AGTATTTCACTCTATCCCCGTTTGTTTTGGGTCGGCTGTTAGGCCGTCAA
CGCCAGCGGCGGTGTAATGTGCATTCATTCTCCGACCAGAAAAACGCGCT
CGCAGTTTACGAAGTGTCGGTGTTGCTTGCTTTTGGGCAGAGCCACCATC
AACCACCACGGGTGTAGCCATAAGTGCGGTATCGAAATCGTTTTTCTAGC
GCTGTACGGGAACGGTTAGTCCGATCTACTGCTGTACAATGCACATCGAA
GCTAGGGTCGGAGCAAGTGTTTTTGTTGTTTTACTGTTCCTGTCGGACCT
GATTGCTACTACAGCAACTGATTTGCCAAGGCGCGGAGGTAGCTTTTCAC
GGAATACTCTCAATGCAACGTGTTCTCAACATCGGTATGATACTACACCA
GCGATGTTCCAGGATCCTGGCGTTTGACTTGTTCTTATGATCGCTTTGCG
TGTTGCTCCACCTTTCGGTCTCCGTGGCCAAGCAACGCGATGCGGTTCGG
ATTTCGGGTGGCATCCCTCGCGCTGGGGCTGATGATGATCATCGCCGCCT
TTACGGAGGTATGTGGTTTGGGAAGGAAATACAGTTAGCGCCCACCCTTG
AGAACCTGGGAGTTACGAAATTCAGGCTCACAACATAGGAACTTCACGAA
GTTGGTAAATAAACACACGTGCTCAGTCAAGAATCCCACACTAAAATCTA
GCAGCTGTTGGGGAACCATAGAGACCATAAGAAACGAGCCTCGGCCGAAA
TAAGTAGTTCTCCAATACGGGCGCTGTTTGACTACACTGTACGTTGGCTC
ATGGTAGCTCTTCGTGCTTGTTCAGGGAGGTTCCATGGTTGTTGCTGAAA
TACGAGCGTCATGCAGCCGTCCGCGAGACTGAGCCGGAGCGCCGTGTTGG
TTCTGCACGGTGTGCTGTCTGTCTCATCGTCATCATGTCTTTCACATTGC
ACCACCCACACACAGATTGGTTGGCATTTTGCCCGTTGACGTCGTGTCTG
TCTTCTCTTTGTGCCGCCTTACTCATCGCTGGTGACACTAACTTCGTCAC
CTTTCGAAACATGACGTTTTATGACGGTGGACAACATACGATGGTTCCCA
GCTATTGAACCTGTCGTCTTTCACGACATTCTTCATCGCTCTGTACAATC
TTCTCTTCGCCGGAGTGCTGATTCTTCACGAGAGCCAGGTGGGTCATTTG
CTGTATCCGCTGAGCACGATGGACCGTGGTACAAATAAAGAAAAAAGAAA
CTTGGGATTTTCACGCGCGAGTCGAGGAAGTGAGGAGATGAGAGGTCCAG
AAAGGAGCTGAGGTTGGCATGTCATAAAAGAGTCATCCAATACAGAATGT
ACTCAGGTGTTGTCACACCAAATACATTGGCGTCGTTAACACAAAATGTG
TAGCCAAATGTTTGGTTTGTTGTGGGGTAGCTTGTTTTCTTCGGGCAGAT
ATTCCGTTGAGGCCACATCAGGAAGTAGTCTTGAATTGTTCTTTTTTGTA
CGACTCGTGAATAACACGGCCACCCATCCGTGTTTTCGTGACTGACGGCG
CTTCGATTGGCCAACACTTCCACTGGATATCGATGCTACCCTTCACAGGG
GTTGATTATGTGCGACGGGGTGGACTACACCATGCGAAGATATTTCGGGC
TGGTCTACGGCCACATGGGCAGGTATGGCAGGATTATTCTAGTCAAGGGT
TGGACGAGCGGGGCTGTTTGGGATTTCCGGCGACCATCTGCGCGGGTAGA
TTGATTGACACGCACCGCGCGCACACATGTTCTCCCGAGCTTTATGATTG
GTTCATATGCTCAAGCGGGTGATCTCGTTCGACACTGTGAGCGACATTAT
GGTGTTGAACGTGACACGCAACATTTGTGCTCCAATGCTACACAGCAGTT
TTGGAAATGCGTGGCATTGTGTTCAAGCGTCTGGCGCCACTGGTGACAGG
ACGAAGCCAAGACCAACAACCGTTATTCTTGCGGCCTTCACGTCTGCTTT
TGTAACAATGCGCGAAGATATGGAGTTGGCCTCATGGCCTATAAGCTTCG
TTGAATGTACTACTCTTGATGGCCATGAAATGTGCCATGATCAAGGTCGG
TCGTAGTACGACACCACTTCACACCTTTGCTTTTATCGTTTCGGCCTTGA
ATTGTCATCCTTAGCACTGCGATGCTGAATGCCCCGTCACGACCTAAAAC
GATACAGCAACAGCAAAGGTTTGAACTGGCATTGTTTTTTCGATCTCGAT
CATTGCACGTTTCATGGCAATCAAAATGTCGACGGTAATCCCTGCCGTTT
CACTTCTCGTTGTAAGACGCAAGACTCGTGCTCCAGATAACTGACGTAAC
CGCATCGTGTAGGTAGATGTATGCTGTTATCTGATCTCTATGAGCCTCTC
CGCACGCAGAAACGGAATGACACCAAAGGTTCGCTCACGCTACTACCATT
GCAGCCTGATGTCGCCTGCGAAAATGCTGCACTGGCAAATCATCTGATCG
TGAAGACGGCATTAAAAGGGGGGTTCTGCTGAAATCCCACCAAGCAGAGT
GTGACCCACTTGCTCAACGACAGACATGCAAAAATGTCTCTTGCTGAGCA
AGTCGATCTTGCTGTACCTCGCGTGCTTTGAGCAGAGGTCCGCTGCTTTC
CTGTCGATACATCGCGATGAGATTGTTGTCCCACTGTAAGGGTAGGTTTG
ATTCGTATCTACAACAGATGAGTGTGTGCGCGGCGCGACGTCAATGAACG
CTGTGTGCTGCTCTGCTTGATGTGTGTTTGTTCGCTCATTTGCATGTATA
TTCAGATGCTCTGCTTTGTTTGTTCGCTGGGGCTCTGGCTGTCTGCGCTT
GTCGATTGTACTGGTGCGCGTTTTGCTGTGCATTGATGACGCAGGGCTCT
TTTCATCATCTTCATTGCGTTTCTCAACTTTGCCTTGACTGACGCCGGGT
GGTTCGCAACATTTACGGGTCTTCTGTTGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1521:12320..16804+

>mRNA_Ecto-sp13_S_contig1521.3928.1 ID=mRNA_Ecto-sp13_S_contig1521.3928.1|Name=mRNA_Ecto-sp13_S_contig1521.3928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1521:12320..16804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGGTCCGTCTTGGATGCAACGAGATCAAGGCGAGGGACTTAC
GGCAGCGGATGGAGGCATTAGCGCTGATGGCACGAACGAACCAAACGCAA
GATACGGCGCAATCAAGGCAGAGATGACGGACACCAACGCGATGCGGTTC
GGATTTCGGGTGGCATCCCTCGCGCTGGGGCTGATGATGATCATCGCCGC
CTTTACGGAGCTATTGAACCTGTCGTCTTTCACGACATTCTTCATCGCTC
TGTACAATCTTCTCTTCGCCGGAGTGCTGATTCTTCACGAGAGCCAGGGG
TTGATTATGTGCGACGGGGTGGACTACACCATGCGAAGATATTTCGGGCT
GGTCTACGGCCACATGGGCAGGGCTCTTTTCATCATCTTCATTGCGTTTC
TCAACTTTGCCTTGACTGACGCCGGGTGGTTCGCAACATTTACGGGTCTT
CTGTTGTTGTGA
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