mRNA_Ecto-sp13_S_contig15205.3922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15205.3922.1
Unique NamemRNA_Ecto-sp13_S_contig15205.3922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15205.3922.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 5.390e-76
Identity = 126/130 (96.92%), Postives = 126/130 (96.92%), Query Frame = 3 
Query:  216 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLQ 605
            MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG  RPGLSSSLQ
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQ 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15205.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS4_ECTSI5.390e-7696.92Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15205contigEcto-sp13_S_contig15205:2..3682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size710
Hectar predicted targeting categoryother localisation
Exons5
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15205.3922.1prot_Ecto-sp13_S_contig15205.3922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15205 2..2290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.1420412-CDS-Ecto-sp13_S_contig15205:1..2091681462809.1420412-CDS-Ecto-sp13_S_contig15205:1..209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15205 2..209 -
1681462809.152317-CDS-Ecto-sp13_S_contig15205:1115..12671681462809.152317-CDS-Ecto-sp13_S_contig15205:1115..1267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15205 1116..1267 -
1681462809.1722703-CDS-Ecto-sp13_S_contig15205:2155..22901681462809.1722703-CDS-Ecto-sp13_S_contig15205:2155..2290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15205 2156..2290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.1811125-UTR-Ecto-sp13_S_contig15205:2290..22911681462809.1811125-UTR-Ecto-sp13_S_contig15205:2290..2291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15205 2291..2291 -
1681462809.1902034-UTR-Ecto-sp13_S_contig15205:2312..24091681462809.1902034-UTR-Ecto-sp13_S_contig15205:2312..2409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15205 2313..2409 -
1681462809.2007856-UTR-Ecto-sp13_S_contig15205:3565..36821681462809.2007856-UTR-Ecto-sp13_S_contig15205:3565..3682Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15205 3566..3682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15205.3922.1

>prot_Ecto-sp13_S_contig15205.3922.1 ID=prot_Ecto-sp13_S_contig15205.3922.1|Name=mRNA_Ecto-sp13_S_contig15205.3922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV
NDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRG
GGGQTVTGANTTAAGTPTGGGRPGLSSSLQHYRQQGNPSTSPPDPAAAAA
GTAHHAVVFPPPAAL
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mRNA from alignment at Ecto-sp13_S_contig15205:2..3682-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15205.3922.1 ID=mRNA_Ecto-sp13_S_contig15205.3922.1|Name=mRNA_Ecto-sp13_S_contig15205.3922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15205:2..3682- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGCCCCCCTGGTGCATGCGTCCCGCTCTTTCCAGCTTTCCCAGTCTG
TCTGCTGTGTTTCTACCGCTACCTCTGCCCGGCACAAGCGCTCTCACATC
CCGCACCAATATTGGAGGTAGGTACACCGATTGAGTGTTGAGTATGCCAT
GTCCATTTTTGTCTGATGGATGGTTGTTTTTCCGCCTACAACTGCACAGC
TCTCAAACCCGAGAGAACTCAGTGGGTCAACCATCGTGCGGACGAGTCGA
CGACCACACCCACTGCCGTCGAAAGCGATGTCCCCGGGCAAGCCCTCACC
CCTCCTCTCGTGAGCGCATACTGGACCGCAAAGAAGGGGCTATGATGGCA
TCGTCTTTCATTTTGTTTGATGCTGCTTTACAACGGTAGCACGCAGGGCA
CAAACCCGCCGCGAGCTGGTTTTCGAATTGCGAATGAATTTCTTCCGTGG
AATTGCGCCGCTTCTGGGGTTGTCCATGACGCCCCACGTAACTGCTGTGC
AGCAGCCGCACAGCCCGTGGTTGGGTGTTGAAAGGTTGAGCTTCCCTCTT
CCTTTTGGGATTGTATCATGGTTATTGCAGGGCACTCTCGCCGAGCGTGA
CGCCCGATCACGGGAAAGGCATGCGCTCGACTGTACGTCTAGCCCTGAAG
CTCTGCATGCAGGAACCGTTACACAGTGTACATCCGTGTTCACCGACCTT
CTTTCCAACGCACAGATAGGCCTCGAGGGCATGGTTGTAGGCGCAGTGGG
CGGGATGGTGTCCTTCGTATTCTTCGGGCCCGATAGCAAATGGTGCACCA
TGTGTGTGCGTTTCTTCGCCCTGATGATGTTCACAAGGCCAAGCCATGAG
CACCCTGCTACTTCCTCATACGGAGTCTAGATATTGTAGGCTCGGTGAAG
TCTCGGTGTTTTGAACTGCACAAAAGTTGCTGCGAATTCCCGAGCATGGA
ACTCTCAGCAGCTTCAGTAAACAGTAGGAATTCTGGCAGAAGCATGAACC
ATGAGGTTCCTCGGTATACTTTGGATCCGTGTGTTCCATGGCTACGCTCG
CCCAGAAACGGCACTGGAGCGTCCGGACGGAGCAGGGCCAGACAAGAAAC
GATGTCCGATAACCGGAGAATCAAAACACACTCCGCATCACCACTGCCGC
CATGGCCCCCACCTAACGCGTTCTCCCCTTCAGCAACGCATATTCTGCTC
TCCATGCCTGCATATCGTAAGTGGCCGAAAATACTTAGCCGAATCCAAAT
CGCCAACTACCGTAACGCTGTAGGAAGAGCAACGGCATACCGGGAGCGAC
CGGGAGCATTTGCAGACGGACGAAGGCGGGGTTCCAAGGGATCATAAGGG
GTACGGGGTGGCTGGGAACGGCGCGGATACTGGGTGGCAAGCATGTCGCA
GTACCAACAGCACCCGGCGCCGGCCTCGGGAGTGGTTGATGACGCGGGCG
AGGCGTTCGCTCGGGCAGTGTTCTGCCGCTTCCTACGCCAGGCCACCATC
TCCCGAGACATCGATGACGTCATTGAGGTGAACACCCTAATCTCCGTGTC
TGCTAACAGCTTGGTGTCTAGGTGCTGCTGGCATGGGAGAGAAAAAAGGG
GAGTCTAGTCCTCTTGCGGCAATGTTGACGCCATTGAGGTGAAACCCGGC
CCGCTTAGGCTGGCCTTTCGTAGCTCACACTTCTGTGCTGTTAGACTGGA
GTCTGTCTCCCGAGACATGGATGGCTCCGTCGAAGTGCGAGGTGCATCTG
TCCACCAACCTTCGTAGCTACACTGCTGTGTGTGAGACTGGGGTCTTGGT
TCGCGTTATTTTTGGGTTGGTTCAATCGTTTGTTTGCTTTTGTTACAAAT
CGTTCAATCGTTGGTGTAAATCGTCGGGTTCACACCAATCTTTGATTGAG
CCGCGCATGTTTTTCGGACGGTTTTCGCGTAATTTCGATTATTGCTGCCC
GAGGAGAGACACGTTTGGAAATACGAAGGACCTTTCGAGGAAGAATGAGC
GAGTGCAATTTGATCCAGTATGCTGCCGTCGCTCCCTGGCAAAATGCGGT
CAAGAATAATTGTTCATCTCCGGCCTTTTTTCCATTTCGTTATTATCATT
CAAAACGAAAAACGACCCGCGAACCGGTGTCACGCTAAAGTTGAGGACGA
ACGCCGAACAGGACCAATAAAGAATTGGTTGCTATTGCATTTTTCAGATC
GGGAAACAAGCGCAGCGCGTAAAGGCGGACAAGGGGGGGAACCGACAGCG
TCAATATCTCCCACTGTTTCTCACCACACGGCAACGCATCACATTGTCGA
ATAGTGATGCAGTTCAAACACGCTCCAGATCAGGGTTTCACTGGACTCAA
CAGCCTGCCGTTGTCTTTGGCGACCTCCCGTGCCTTTGACACGTGCGTCT
TGCGCGTACGTATAGCACATGCACATCGTCAACGACGACTCCCAGACGTT
CGCGATCCGGCTCGGGGGGGACGCGCGGGTCCCCGTGAGCCGAGAGCTTA
TCCTAGCCCTGGCGGCCAAGAAGAAGGAGCTGCTGGCGCTGTGCGAGTCG
AAGCTGAGGACGCCAAGGTGGGGGGTCGTTTTCTTTTCGCCCCCCATGTG
TGAATGTCGCAAAACAGGAGAGATAGGAGAGGCATCTGTTTTTTTTGTTT
TGGTATACATGGGACATTTGAGGGCGACTGGGGCGGGGTCGTCTTGCAGT
CAATAGCGAGCGATGCTCCTTCGAGGCCGGCCGACACACCCTCTTCCATG
ATTTCTGGTCGCTCCGACCCCACACCAGTCGCAGGAGGCTACTGCACTTG
GTAGGACCTCCTGAGTCTCAGGGTACGTCTGCCGTTCGTCTCTCTGATAT
ATCTTGTACCGCCTCTATGGGTTCCTCGTTCGGGTGTACCGTTTAAGTCT
CACTCTTCTTTGGAGTCAAACGGGGCTACGCTAGTAAGGTAGGAGGTTTT
GGCGCTCAGGGCTTGTCGACAGTTGTATTGTGCAGCCTCTCTGGACCCCT
TCAACGGTACTCTTCAAGCAGTATCAGTCAGTACCGAAAACAACAGCCGA
AACTCCTAGCAGAGACAGGCATCGGTCCTTGATTTCCATTCCGAACCTGC
TCCTGAAATCTGAGTTAACAGACCACGTTCCCCGAAATTTTCGTGAACAC
ACATGTTTTTCCGCTTGTTTCTTTGTCCGCCCGTCTACCAGACGGCTATT
TATCATGCCGATCCCTCCCAATCAAAGCGTGTAAAGGGCTACCGAGGGCC
ATGAAATTGAATGGCGTGTGCCTAGTCGAAGAACAGTATCGCTGTCACCG
CCGATGTTTTCAGCTGTCCTTCCTGTGAATCTGCCTGTCATATTCCTGTT
CGTCTGTCTGTTTGTGTCTGTTTGTCCGTATGTGTCTGTCTGTCTGATTG
TGTCTCTCCCTCTCTCTCCCTCTCTCTCCCTCTCTCCCCCGCCCTCCCCC
CTTCTCTCCCTCTCTTGTCTCAGGTCGATCAGGGGCGGCGGCGGGCAAAC
CGTCACCGGGGCCAACACAACCGCCGCCGGAACGCCGACCGGCGGCGGCC
GCCCCGGTCTTTCGTCGTCCTTGCAGCACTACCGACAGCAAGGGAACCCG
AGCACCAGCCCGCCCGATCCCGCGGCTGCGGCAGCGGGGACAGCGCATCA
CGCGGTCGTTTTTCCGCCGCCAGCAGCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15205:2..3682-

>mRNA_Ecto-sp13_S_contig15205.3922.1 ID=mRNA_Ecto-sp13_S_contig15205.3922.1|Name=mRNA_Ecto-sp13_S_contig15205.3922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15205:2..3682- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGTACCAACAGCACCCGGCGCCGGCCTCGGGAGTGGTTGATGA
CGCGGGCGAGGCGTTCGCTCGGGCAGTGTTCTGCCGCTTCCTACGCCAGG
CCACCATCTCCCGAGACATCGATGACGTCATTGAGCACATGCACATCGTC
AACGACGACTCCCAGACGTTCGCGATCCGGCTCGGGGGGGACGCGCGGGT
CCCCGTGAGCCGAGAGCTTATCCTAGCCCTGGCGGCCAAGAAGAAGGAGC
TGCTGGCGCTGTGCGAGTCGAAGCTGAGGACGCCAAGGTCGATCAGGGGC
GGCGGCGGGCAAACCGTCACCGGGGCCAACACAACCGCCGCCGGAACGCC
GACCGGCGGCGGCCGCCCCGGTCTTTCGTCGTCCTTGCAGCACTACCGAC
AGCAAGGGAACCCGAGCACCAGCCCGCCCGATCCCGCGGCTGCGGCAGCG
GGGACAGCGCATCACGCGGTCGTTTTTCCGCCGCCAGCAGCCCTC
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