mRNA_Ecto-sp13_S_contig15203.3920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15203.3920.1
Unique NamemRNA_Ecto-sp13_S_contig15203.3920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15203.3920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15203contigEcto-sp13_S_contig15203:2664..3525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size862
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.0524893-UTR-Ecto-sp13_S_contig15203:2663..29881681462809.0524893-UTR-Ecto-sp13_S_contig15203:2663..2988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15203 2664..2988 +
1681462809.0695448-UTR-Ecto-sp13_S_contig15203:3426..35251681462809.0695448-UTR-Ecto-sp13_S_contig15203:3426..3525Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15203 3427..3525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462809.0617151-CDS-Ecto-sp13_S_contig15203:2988..34261681462809.0617151-CDS-Ecto-sp13_S_contig15203:2988..3426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15203 2989..3426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15203.3920.1prot_Ecto-sp13_S_contig15203.3920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15203 2989..3426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15203.3920.1

>prot_Ecto-sp13_S_contig15203.3920.1 ID=prot_Ecto-sp13_S_contig15203.3920.1|Name=mRNA_Ecto-sp13_S_contig15203.3920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MAISACCSLSERCTIDCCCACSGSNEKGFTISTGCPRLPNCFWHQEVGSP
ATSYGGDPEYTAVQPPSCRQDRRCRPAVGLSLLHVYRGLFYLTRNTCASR
CPHVFQLFTRPSALDERPPAKHPSSPPLCVDGVRKGRPKSTTVQR*
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mRNA from alignment at Ecto-sp13_S_contig15203:2664..3525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15203.3920.1 ID=mRNA_Ecto-sp13_S_contig15203.3920.1|Name=mRNA_Ecto-sp13_S_contig15203.3920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15203:2664..3525+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTTTGAGATTCAGCAGGCGGGAGGAATTTCCTCCTGTCTGTCCGAGT
ATATCCGATTTGTAATAAGCGAAGAGGTTGTGCCGCAATAACCGCACCGG
CGGCGATGATGTCGCCGTGTGTCAAGCACCCTCAGTGTATCTATCGTGTG
CGAGATAAACGTTCTCAAGGCCAGGCTATCGTAACAAACAGCGCTGCTGG
GGATTGCCCAGCGGAAAAGTCGCTGCTTTGACATGTCTTGACGAGGTCCA
CTGCCTCCGCTCACCCCACACCTCTTGGAACATCCTGGCTGTCGGTCAGG
CCGTCTGCCCAACGTGACTGGAGTAATGGCCATATCGGCATGTTGCAGCC
TGTCAGAGCGGTGCACCATTGACTGCTGTTGCGCGTGCTCCGGCTCAAAC
GAAAAAGGGTTCACAATAAGCACCGGTTGCCCCCGCCTCCCTAATTGCTT
TTGGCATCAAGAGGTTGGTTCGCCCGCAACGAGCTACGGCGGTGATCCGG
AGTACACTGCTGTGCAGCCACCCTCATGCCGGCAGGACCGTCGTTGTCGC
CCAGCGGTCGGTCTCTCCTTGCTGCATGTGTATCGAGGGCTGTTTTATCT
CACTAGGAACACTTGTGCATCTCGTTGCCCCCATGTATTTCAACTCTTCA
CGCGCCCGTCTGCCTTGGATGAAAGACCGCCCGCTAAACACCCGTCGTCA
CCGCCTCTCTGTGTTGATGGCGTGCGAAAGGGCCGTCCCAAAAGTACTAC
CGTCCAACGGTAGAAGCGACGCGTACACCGATGGAAGCGTGCGTGTGTTT
CTCTGTCTCAACCTGAGCCCCTCCCTGATCGTCACACGGCAGTCACACCA
AATAAGACGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15203:2664..3525+

>mRNA_Ecto-sp13_S_contig15203.3920.1 ID=mRNA_Ecto-sp13_S_contig15203.3920.1|Name=mRNA_Ecto-sp13_S_contig15203.3920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15203:2664..3525+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATATCGGCATGTTGCAGCCTGTCAGAGCGGTGCACCATTGACTG
CTGTTGCGCGTGCTCCGGCTCAAACGAAAAAGGGTTCACAATAAGCACCG
GTTGCCCCCGCCTCCCTAATTGCTTTTGGCATCAAGAGGTTGGTTCGCCC
GCAACGAGCTACGGCGGTGATCCGGAGTACACTGCTGTGCAGCCACCCTC
ATGCCGGCAGGACCGTCGTTGTCGCCCAGCGGTCGGTCTCTCCTTGCTGC
ATGTGTATCGAGGGCTGTTTTATCTCACTAGGAACACTTGTGCATCTCGT
TGCCCCCATGTATTTCAACTCTTCACGCGCCCGTCTGCCTTGGATGAAAG
ACCGCCCGCTAAACACCCGTCGTCACCGCCTCTCTGTGTTGATGGCGTGC
GAAAGGGCCGTCCCAAAAGTACTACCGTCCAACGGTAG
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