prot_Ecto-sp13_S_contig15201.3919.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15201.3919.1
Unique Nameprot_Ecto-sp13_S_contig15201.3919.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length334
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Match: D7FIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIV7_ECTSI)

HSP 1 Score: 532 bits (1370), Expect = 5.270e-181
Identity = 290/334 (86.83%), Postives = 296/334 (88.62%), Query Frame = 0 
Query:    1 MSKIYLHYEGERGPDHTFIWRKAGGLPFTGRDLAEALSGFVESYGKKHGREAYNQGKGMDASRLRLVADPPDPLGAAAAAAEAVVLDVTSNAAVDRAIVHTGCDIRVEEGPPGDENAKVKEQRSAGGGATSVGXXXXXXXXXXPVAEGVAVGKAGPNVAARAKKLAIKAEKMMARKNLRGARDLAKEALEADPRNARALRCLADTYYKAGLVDEAFAATKECCSKASDGGSPADFLLAGKCLTQLERYQEATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ 334
            MSKIYLHYEGERGPDHTFIWRKAGGLPF GRDL EALSGFVESYGKKHGREAY+QGKGMDASRLRLVADPPDPLGAAA AA+AVVLDVTSNAAVDRAIVHTGCDIRVEEGP GDEN KVKEQ+SAGGGATSV XXXXXXXXXX                             MARKNLRGARD+AKEALEADPRNARALRCLADTYYKAGL+DEAFAATKECCSKASDGGSPADFLLAG+CLTQLERY EATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLF Q DKGVPSLLRAIMSDQ
Sbjct:    1 MSKIYLHYEGERGPDHTFIWRKAGGLPFIGRDLGEALSGFVESYGKKHGREAYDQGKGMDASRLRLVADPPDPLGAAATAAKAVVLDVTSNAAVDRAIVHTGCDIRVEEGPTGDENGKVKEQKSAGGGATSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMARKNLRGARDVAKEALEADPRNARALRCLADTYYKAGLIDEAFAATKECCSKASDGGSPADFLLAGRCLTQLERYHEATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFKQTDKGVPSLLRAIMSDQ 334
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BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Match: D7G1Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-17
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0 
Query:  281 MGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ 334
            MGDA GA N+YM VL+RTGEKHIESLVGYGRLAL+ NQADKGV SLLRAIM+ Q
Sbjct:    1 MGDALGARNVYMAVLRRTGEKHIESLVGYGRLALMSNQADKGVSSLLRAIMTAQ 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIV7_ECTSI5.270e-18186.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1Q8_ECTSI1.880e-1781.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 161..334
e-value: 1.1E-14
score: 56.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 163..329
NoneNo IPR availablePFAMPF12895ANAPC3coord: 181..257
e-value: 1.4E-8
score: 34.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15201contigEcto-sp13_S_contig15201:395..4052 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15201.3919.1mRNA_Ecto-sp13_S_contig15201.3919.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15201 395..4052 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15201.3919.1 ID=prot_Ecto-sp13_S_contig15201.3919.1|Name=mRNA_Ecto-sp13_S_contig15201.3919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MSKIYLHYEGERGPDHTFIWRKAGGLPFTGRDLAEALSGFVESYGKKHGR
EAYNQGKGMDASRLRLVADPPDPLGAAAAAAEAVVLDVTSNAAVDRAIVH
TGCDIRVEEGPPGDENAKVKEQRSAGGGATSVGAPAPAPAAAAPVAEGVA
VGKAGPNVAARAKKLAIKAEKMMARKNLRGARDLAKEALEADPRNARALR
CLADTYYKAGLVDEAFAATKECCSKASDGGSPADFLLAGKCLTQLERYQE
ATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGE
KHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf