mRNA_Ecto-sp13_S_contig15201.3919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15201.3919.1
Unique NamemRNA_Ecto-sp13_S_contig15201.3919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Match: D7FIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIV7_ECTSI)

HSP 1 Score: 532 bits (1370), Expect = 5.270e-181
Identity = 290/334 (86.83%), Postives = 296/334 (88.62%), Query Frame = 1 
Query:    1 MSKIYLHYEGERGPDHTFIWRKAGGLPFTGRDLAEALSGFVESYGKKHGREAYNQGKGMDASRLRLVADPPDPLGAAAAAAEAVVLDVTSNAAVDRAIVHTGCDIRVEEGPPGDENAKVKEQRSAGGGATSVGXXXXXXXXXXPVAEGVAVGKAGPNVAARAKKLAIKAEKMMARKNLRGARDLAKEALEADPRNARALRCLADTYYKAGLVDEAFAATKECCSKASDGGSPADFLLAGKCLTQLERYQEATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ 1002
            MSKIYLHYEGERGPDHTFIWRKAGGLPF GRDL EALSGFVESYGKKHGREAY+QGKGMDASRLRLVADPPDPLGAAA AA+AVVLDVTSNAAVDRAIVHTGCDIRVEEGP GDEN KVKEQ+SAGGGATSV XXXXXXXXXX                             MARKNLRGARD+AKEALEADPRNARALRCLADTYYKAGL+DEAFAATKECCSKASDGGSPADFLLAG+CLTQLERY EATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLF Q DKGVPSLLRAIMSDQ
Sbjct:    1 MSKIYLHYEGERGPDHTFIWRKAGGLPFIGRDLGEALSGFVESYGKKHGREAYDQGKGMDASRLRLVADPPDPLGAAATAAKAVVLDVTSNAAVDRAIVHTGCDIRVEEGPTGDENGKVKEQKSAGGGATSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMARKNLRGARDVAKEALEADPRNARALRCLADTYYKAGLIDEAFAATKECCSKASDGGSPADFLLAGRCLTQLERYHEATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFKQTDKGVPSLLRAIMSDQ 334
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BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Match: D7G1Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-17
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:  841 MGDAPGAGNMYMEVLQRTGEKHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ 1002
            MGDA GA N+YM VL+RTGEKHIESLVGYGRLAL+ NQADKGV SLLRAIM+ Q
Sbjct:    1 MGDALGARNVYMAVLRRTGEKHIESLVGYGRLALMSNQADKGVSSLLRAIMTAQ 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15201.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIV7_ECTSI5.270e-18186.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1Q8_ECTSI1.880e-1781.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15201contigEcto-sp13_S_contig15201:395..4052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score532.7
Seed ortholog evalue1.2e-148
Seed eggNOG ortholog2880.D7FIV7
Model size1002
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs28R2N@1,2QXRP@2759
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-07_007590.1
Cds size1002
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15201.3919.1prot_Ecto-sp13_S_contig15201.3919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15201 395..4052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.9505703-CDS-Ecto-sp13_S_contig15201:394..5601681462808.9505703-CDS-Ecto-sp13_S_contig15201:394..560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 395..560 +
1681462808.961982-CDS-Ecto-sp13_S_contig15201:1344..16701681462808.961982-CDS-Ecto-sp13_S_contig15201:1344..1670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 1345..1670 +
1681462808.9724333-CDS-Ecto-sp13_S_contig15201:1885..19541681462808.9724333-CDS-Ecto-sp13_S_contig15201:1885..1954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 1886..1954 +
1681462808.982049-CDS-Ecto-sp13_S_contig15201:2470..25691681462808.982049-CDS-Ecto-sp13_S_contig15201:2470..2569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 2471..2569 +
1681462808.994293-CDS-Ecto-sp13_S_contig15201:2906..30221681462808.994293-CDS-Ecto-sp13_S_contig15201:2906..3022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 2907..3022 +
1681462809.011284-CDS-Ecto-sp13_S_contig15201:3479..36151681462809.011284-CDS-Ecto-sp13_S_contig15201:3479..3615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 3480..3615 +
1681462809.0236924-CDS-Ecto-sp13_S_contig15201:3962..40521681462809.0236924-CDS-Ecto-sp13_S_contig15201:3962..4052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15201 3963..4052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15201.3919.1

>prot_Ecto-sp13_S_contig15201.3919.1 ID=prot_Ecto-sp13_S_contig15201.3919.1|Name=mRNA_Ecto-sp13_S_contig15201.3919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MSKIYLHYEGERGPDHTFIWRKAGGLPFTGRDLAEALSGFVESYGKKHGR
EAYNQGKGMDASRLRLVADPPDPLGAAAAAAEAVVLDVTSNAAVDRAIVH
TGCDIRVEEGPPGDENAKVKEQRSAGGGATSVGAPAPAPAAAAPVAEGVA
VGKAGPNVAARAKKLAIKAEKMMARKNLRGARDLAKEALEADPRNARALR
CLADTYYKAGLVDEAFAATKECCSKASDGGSPADFLLAGKCLTQLERYQE
ATTALGRARTAGQGGLVDDADAALAFCRFKMGDAPGAGNMYMEVLQRTGE
KHIESLVGYGRLALLFNQADKGVPSLLRAIMSDQ
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mRNA from alignment at Ecto-sp13_S_contig15201:395..4052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15201.3919.1 ID=mRNA_Ecto-sp13_S_contig15201.3919.1|Name=mRNA_Ecto-sp13_S_contig15201.3919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3658bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15201:395..4052+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGATCTACCTGCACTATGAAGGAGAGCGGGGGCCGGACCACAC
ATTCATTTGGCGCAAGGCAGGCGGCCTGCCCTTCACTGGCCGCGATCTGG
CCGAGGCTCTTTCGGGATTTGTCGAGAGCTACGGGAAGAAGCACGGCCGA
GAGGCGTACAACCAAGGTGAGAAGGGGGACAGAGAGCCACGCGCGTAGGT
GCGTGGGTTCGTGTGCAGTGTGCGACACCACCGGTTGTGCGGTGACGGTC
TTACGTGGGAGTGTAAATGGTTTCCCATGAGAGTGGCACCTTCGGGGTGC
AGTTACACCTGTGTTGCTGTCCAGCATAGATACGCATTTTGTCTCTGCTG
TTGCTTGTGGAGAACTTCTATTACTACATCTGCTGCTGTTGCATCTCTCC
GGCACAGCGCAACAGCTCCTGTGTACTGGTACGTGATTGTAGAAAAGCAG
GAGACGATCTTACATCACTACCGCACGTCGTTGCTGCTCTTTGCACCGTT
GCTGCGAGCTTCTTTGTCAACCGATACAGCGGTGAAAGGTGTCGTACTTC
GAGTCAGTGCATCCGTATGCGTACCGCGGCACAACCCACATCGCACCGCT
TCGTACAGCAGTATCCACGTATATATGCCCTTATGCATTACTGCTGTACA
CACGGATGCATTTCATGCATTCCCGTCCTCTTCGTTGTCTCGTGATCGAA
GAGCATCATGGTGCGGATGCAGCCCTCCAGTAACGCGCGATTATATATTT
TTTTTATTTGAGGAAGAAGGGAAGGAGAGACGGGGAGACAGGCATACAGA
CACATACGCTTTGCCGGCCCCCCAACACCCTGGCACTACTACTGCGGTAT
TGCTGTAGACGTTTTGAAGACTTTGACGCGTTTTTGGCTGCAAGCAGACA
AGCGTACTTTTCACGGCGGTGCTACCGTCCCTCCGGTGTCGTGTTTCCAG
GCAAGGGCATGGACGCCTCCCGGCTCCGCCTCGTGGCCGACCCCCCGGAC
CCGTTGGGGGCGGCAGCAGCGGCAGCGGAGGCGGTTGTTCTTGACGTGAC
CTCGAACGCAGCGGTAGACCGCGCCATTGTGCACACGGGATGCGACATCA
GGGTCGAGGAGGGACCTCCGGGAGACGAGAACGCCAAAGTGAAGGAGCAG
AGGTCTGCGGGCGGTGGTGCTACAAGCGTAGGGGCGCCGGCGCCGGCGCC
GGCCGCGGCGGCGCCGGTAGCAGAGGGCGTGGCGGTAGGGAAGGCGGGAC
CGAACGTGGCTGCGAGGGCCAAGAAGGTTGGTGGTGTTGTGGGATTGCAT
GATGCGAGTGTTGATGGTCGTGTTTTGAGGGTAGTGGCGGTGGTGCGGTG
GGGGTTGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCCGCTGTTAT
TGCTGTGGCTGCTAACGTAGGCGCCGTAGCAGGGATTAATCCGTTGCTTT
TGCTCCGCCGCGGACCCCTCTCCCTGTTTTCTGCACGACAGTTGGCCATC
AAGGCGGAGAAAATGATGGCTCGGAAAAACCTTCGCGGTGCAAGGGACTT
GGCCAAAGAGGTGCTACATACACGCGTTGACTAGATGCAACTCCTTTTTG
TAGCTGCCGGTTTGCCATTCTCTTGGTGCATGCAGCGGACGTGTGGTCGG
CGTTGCCAAGCTCGAGGGTAAGCCTAGCGAATGTACGTGGAGAATCCCCA
GAAGTGTAACTCCAGAAAGCTATTCTTGGTATCTCGGCTTTCTGCGAGTC
TCTCTCTCTCTCCTTCTCTCATTGTCTCTCCTCTCTAATTTTCTCACAAC
TGATCCACGGGCATCCTGTGCGTCGCGTGGCTCGTTCCATCCGAGCACCG
AACGGGGCGACATGTAACTTGCTCGAACGTTCTCATTTGTACCCTTTTTC
CTGTTTTTTTTTGTTTTGAAACCTCTTGTGTTCCCCCTCCCCAAGTCGTC
CCTGCGTTGTTGATGTCGACAGCCGCCGTCATAGTCCATTCTGCCGTCAT
CATCATCATCGTGTTCTCTATCTTGCTACGTCGCCTTCCTGGTTGCCGTC
TTGCCTCATTGTGATGGTGTTTCCAGGCTCTTGAGGCCGATCCCAGGAAC
GCGAGGGCGTTGAGATGCCTGGCGGACACTTACTATAAGGCCGGCCTCGT
TGACGAGGCTTTCGCTGCCACCAAGGTACGGTATGGTATGGTATACCCGG
CCAACGGCGGGTCTCATGTTATTGTAGGGCAGCTGTTGTCGGTTCTCCTG
ACTGCTGCACCTTGTTCACCACTATAAGCTATGCATCCAATGGTATGCAT
CAGATTGTTTCTTTGTTTTTTGTATGTCTTCTTGCCTACCTGCTGTGACT
TTTGTTCTCACCGCTGCTGCAACTTTTAAGTCGCTTCCTCGCACCTCGTT
ACACTTGGTCCCGATTCTATCACAACACCAAACAACAACAACCACGCTTG
CAGAAGCAAAGAACGCCTTACAATGCCCTTGCTTTGGGTCGTGTGCGCGG
ACACATGGGCAGGAGTGCTGCTCAAAGGCAAGCGACGGCGGATCTCCTGC
CGACTTCCTCTTGGCCGGAAAGTGCCTCACTCAGTTAGAGAGGTACCAAG
AAGCCACCACAGCGCTTGGCAGAGCCCGGTGAGTTGGCGGAGTTGTGTGG
CTCCTACATGCCGTGCGCACGCGGTTCAATGCATGCGCAAAAGGTTACGA
AGCGCGCTACCACGTTTAAGGACAGCGCGACACGAGGTTTTTCCAGAACC
AAGCTCTTCAGAATCGTATACAAGTACAAATTCCCTCTGCTTCCGGCAGG
AGTCTCTCGCTCGGCCGTGGAGGGCCGCGGGTGCGGGGGCCCGTGGTGTA
GAACCAAGACCGATAGCTGCCCCCCCCCCCCCCTTGTGAAATGTAGTCTA
GGTCGGTGAATACGCTCCTTCCCGGATTTGTAGGGATGCGAGGCCCACCG
CCTAACGACTGCGGCATGCGTTTACATGAGTACACGCCCCTTGTCTCTGA
GCATCGCGATCGGTTCCATCTTTGACTTTTTATTTTGCATGTCTGACGGT
GTCCACCCCGGGCGCCGCGTGTATCACTGCCATAGGACCGCGGGTCAGGG
AGGCCTTGTCGATGATGCTGATGCTGCCTTGGCTTTCTGCCGGTTCAAGA
TGGGGGACGCCCCCGGCGCTGGAAACATGTACATGGAGGTGCTGCAGAGG
ACCGGCGAGAAACACATCGAGGTGCGCTTGCTGTAGCTACTGCCACCGGT
AATGATGACGATGATGATAGTGATGATGATGCATTTGTTTGTATTCCTGC
AGCTACCTGCTGACGCTGCTCTTGTTGGCGTGATCATCTGCCGTCAGGTT
GTCGTTTGGGTTGCCGAGTGCCCTACGCGTGCGTGACAACTCGTGCGTGG
CAATGCCACGCCCCTCGTTAGTTCAAGTACACATGCACCCTACCGACGGA
TATGATTGTCGTGCGGAGCCCCCGACGGAAATGCTTGCGGCCGACCAACG
TGCTTCCAGCCTACCTCACACCCAGCCTTTCTGTTCTATTGTCGTGTTTG
CTTCGTTGCTGTTGGCAGTCGCTGGTGGGCTACGGACGCCTCGCGCTCTT
GTTCAACCAGGCGGACAAAGGTGTGCCTTCGCTGCTCAGGGCTATAATGT
CGGACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15201:395..4052+

>mRNA_Ecto-sp13_S_contig15201.3919.1 ID=mRNA_Ecto-sp13_S_contig15201.3919.1|Name=mRNA_Ecto-sp13_S_contig15201.3919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15201:395..4052+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGATCTACCTGCACTATGAAGGAGAGCGGGGGCCGGACCACAC
ATTCATTTGGCGCAAGGCAGGCGGCCTGCCCTTCACTGGCCGCGATCTGG
CCGAGGCTCTTTCGGGATTTGTCGAGAGCTACGGGAAGAAGCACGGCCGA
GAGGCGTACAACCAAGGCAAGGGCATGGACGCCTCCCGGCTCCGCCTCGT
GGCCGACCCCCCGGACCCGTTGGGGGCGGCAGCAGCGGCAGCGGAGGCGG
TTGTTCTTGACGTGACCTCGAACGCAGCGGTAGACCGCGCCATTGTGCAC
ACGGGATGCGACATCAGGGTCGAGGAGGGACCTCCGGGAGACGAGAACGC
CAAAGTGAAGGAGCAGAGGTCTGCGGGCGGTGGTGCTACAAGCGTAGGGG
CGCCGGCGCCGGCGCCGGCCGCGGCGGCGCCGGTAGCAGAGGGCGTGGCG
GTAGGGAAGGCGGGACCGAACGTGGCTGCGAGGGCCAAGAAGTTGGCCAT
CAAGGCGGAGAAAATGATGGCTCGGAAAAACCTTCGCGGTGCAAGGGACT
TGGCCAAAGAGGCTCTTGAGGCCGATCCCAGGAACGCGAGGGCGTTGAGA
TGCCTGGCGGACACTTACTATAAGGCCGGCCTCGTTGACGAGGCTTTCGC
TGCCACCAAGGAGTGCTGCTCAAAGGCAAGCGACGGCGGATCTCCTGCCG
ACTTCCTCTTGGCCGGAAAGTGCCTCACTCAGTTAGAGAGGTACCAAGAA
GCCACCACAGCGCTTGGCAGAGCCCGGACCGCGGGTCAGGGAGGCCTTGT
CGATGATGCTGATGCTGCCTTGGCTTTCTGCCGGTTCAAGATGGGGGACG
CCCCCGGCGCTGGAAACATGTACATGGAGGTGCTGCAGAGGACCGGCGAG
AAACACATCGAGTCGCTGGTGGGCTACGGACGCCTCGCGCTCTTGTTCAA
CCAGGCGGACAAAGGTGTGCCTTCGCTGCTCAGGGCTATAATGTCGGACC
AG
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