mRNA_Ecto-sp13_S_contig1520.3917.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1520.3917.1
Unique NamemRNA_Ecto-sp13_S_contig1520.3917.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1520.3917.1 vs. uniprot
Match: D8LC09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC09_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 3.650e-74
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 2 
Query:  968 TTSDGSRGGLNFETQSPTASNDLXXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASPTSGVTFTECTPGDSDTCYNQLEPSMKGLLVERSRGLTCEEICLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 1402
            TTSDGSRGGLNFETQSPTASND+XXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASP SGVTFTECTPGDSDTCY+QLEPSMKGLLVERSRGLTCEE CLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC
Sbjct:  528 TTSDGSRGGLNFETQSPTASNDMXXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASPASGVTFTECTPGDSDTCYDQLEPSMKGLLVERSRGLTCEESCLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 672
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BLAST of mRNA_Ecto-sp13_S_contig1520.3917.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 6.010e-69
Identity = 138/145 (95.17%), Postives = 140/145 (96.55%), Query Frame = 2 
Query:  968 TTSDGSRGGLNFETQSPTASNDLXXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASPTSGVTFTECTPGDSDTCYNQLEPSMKGLLVERSRGLTCEEICLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 1402
            TTSDGSRGGLNFETQSPTASNDLXXXXXXXXXXXXXS SREIAT SPTSST RGIPIMSASPTSGVTFTECTPGDSDTCY+QLEPSMKGLLVERSRGLTCEE CL+ GGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC
Sbjct: 1205 TTSDGSRGGLNFETQSPTASNDLXXXXXXXXXXXXXSASREIATTSPTSSTLRGIPIMSASPTSGVTFTECTPGDSDTCYDQLEPSMKGLLVERSRGLTCEESCLIDGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 1349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1520.3917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC09_ECTSI3.650e-7497.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD92_9PHAE6.010e-6995.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1520contigEcto-sp13_S_contig1520:14039..16081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1756
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004005.1
Cds size1401
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.5885284-UTR-Ecto-sp13_S_contig1520:14038..143891681462808.5885284-UTR-Ecto-sp13_S_contig1520:14038..14389Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1520 14039..14389 -
1681462808.6184244-UTR-Ecto-sp13_S_contig1520:16077..160811681462808.6184244-UTR-Ecto-sp13_S_contig1520:16077..16081Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1520 16078..16081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.598942-CDS-Ecto-sp13_S_contig1520:14389..144711681462808.598942-CDS-Ecto-sp13_S_contig1520:14389..14471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1520 14390..14471 -
1681462808.6083071-CDS-Ecto-sp13_S_contig1520:14758..160771681462808.6083071-CDS-Ecto-sp13_S_contig1520:14758..16077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1520 14759..16077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1520.3917.1prot_Ecto-sp13_S_contig1520.3917.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1520 14390..16077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1520.3917.1

>prot_Ecto-sp13_S_contig1520.3917.1 ID=prot_Ecto-sp13_S_contig1520.3917.1|Name=mRNA_Ecto-sp13_S_contig1520.3917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp
MPTTSETASPTTTDREIDSPSMAPTSMVDSTSAPTDAMPTTVETESPTTT
DRELPAASMAPTSVVDSTSAPTDAMPTTVETASPTTTDREIDPPSMAPTS
VVDSTSAPTDAMSTTPETASPTTTDREIDSPSLAPTSVVDPTSAPTDGMP
TTVETASPTTTDREIDSPSMAPTSMVDSTSAPTDAMPTTPETASPTTTDR
EIDSPSMAPTSVVDPTSAPTDGMPTATETSSPTITDREIDSPSMAPTSVV
ESTSAPTDGMPTTVETASPTTTDREIDSPSMAPTTSDILEPSVSPTPGST
GYETPSPTPSMRGVDRETQSPTTSDGSRGGLNFETQSPTASNDLSRGGID
FETQSPTSTSREIATASPTSSTSRGIPIMSASPTSGVTFTECTPGDSDTC
YNQLEPSMKGLLVERSRGLTCEEICLVGGGLWCDALGLSGCRFCATSCDN
FCTEQGLPDDCECIEC*
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mRNA from alignment at Ecto-sp13_S_contig1520:14039..16081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1520.3917.1 ID=mRNA_Ecto-sp13_S_contig1520.3917.1|Name=mRNA_Ecto-sp13_S_contig1520.3917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2043bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1520:14039..16081- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCATGCCGACCACTTCGGAAACCGCTTCGCCGACCACAACAGACCGGG
AGATCGATTCACCATCCATGGCCCCCACGAGCATGGTCGACTCTACCTCG
GCTCCTACCGACGCCATGCCGACGACCGTGGAAACCGAGTCGCCGACCAC
AACAGACCGGGAGCTCCCTGCAGCATCTATGGCCCCGACCAGCGTGGTCG
ACTCTACCTCGGCTCCTACCGACGCCATGCCGACGACCGTGGAAACCGCT
TCGCCGACCACAACAGACCGGGAGATCGATCCACCATCAATGGCGCCCAC
GAGCGTGGTGGACTCTACCTCGGCTCCTACCGACGCTATGTCGACCACTC
CGGAAACCGCTTCGCCGACCACAACAGATCGGGAGATCGATTCACCATCT
TTGGCCCCCACCAGCGTGGTGGACCCTACCTCGGCTCCTACCGACGGAAT
GCCGACGACCGTGGAAACCGCTTCGCCGACCACAACAGACCGGGAGATCG
ACTCACCATCTATGGCCCCCACGAGCATGGTCGACTCTACCTCGGCTCCT
ACCGACGCCATGCCGACCACTCCGGAAACCGCTTCGCCGACCACAACAGA
CCGGGAGATCGATTCACCATCTATGGCCCCCACCAGCGTGGTGGACCCTA
CCTCGGCTCCGACTGACGGAATGCCGACCGCGACGGAAACTTCTTCGCCG
ACCATAACAGACCGGGAGATCGACTCACCATCTATGGCCCCCACCAGCGT
GGTGGAGTCCACCTCGGCTCCTACCGACGGAATGCCGACGACCGTGGAAA
CCGCTTCGCCGACCACAACAGACCGGGAGATCGATTCACCATCGATGGCA
CCTACTACCTCCGATATCCTTGAGCCGTCGGTGTCGCCTACGCCGGGATC
AACTGGTTATGAGACTCCATCCCCTACTCCTAGTATGAGGGGGGTCGACA
GAGAGACTCAGTCTCCGACAACGAGCGATGGATCACGGGGCGGGCTCAAC
TTCGAGACCCAATCACCAACTGCCAGCAACGACCTGTCGCGGGGAGGAAT
CGACTTCGAGACGCAGTCGCCAACCAGCACCTCGCGCGAGATCGCGACGG
CCTCTCCCACTTCTAGCACGTCGCGCGGTATTCCGATTATGTCCGCTTCT
CCCACATCTGGCGTGACCTTCACGGAATGCACTCCCGGCGACTCTGACAC
TTGTTACAACCAGCTGGAGCCTTCGATGAAGGGCCTTCTGGTGGAGCGGA
GCCGCGGACTGACTTGCGAGGAGATTTGTCTCGTCGGCGGTGGTTTGTGG
TGCGACGCCTTGGGGCTCAGCGGGTTAGTGCTTTCCGTTGCCTCCCTAAC
TGAGCTGCGGTCCGAACCACCATAATCTTCACCGTTGTCGTACCCCTCAA
CAACCACAGGACATTACACACAGGACGTACACCTTAGGTATACCTGCGTA
AGCGTCAAATATAGGGTTGAAGAGGAGGGAGTGATGTCGCCGGGAAACCC
CTCGTTTCAATTGCTCCCAACCGAAACCCTTCTCGTTACGTCAGCACTCT
CACCGTCTTACCCCCCTCCCTTCCTCGGCGCCGTCCTCGTACGTTCTCCA
TTATTTTCAGCTGCCGCTTCTGCGCGACAAGCTGCGACAACTTCTGTACC
GAGCAGGGCCTTCCCGATGACTGCGAGTGCATCGAGTGCTAAAATAAACA
CACTTGAACCACACAGCCACCCTTGAAGTCGCGCGTGTTCGTAATCTCTG
TGGTTGACACGCGCGTTCGGCAAACACCCGTCGGGGGACAAGTGTGGGTT
CTACGACTTGAGCTTCGCGATGGGAAGTATAATATCTTATTTTTTGAATC
GAGGCGGGGGGACCCTCGCGCGCGGTGGGCGCAGCGAAGAGGTTATGCTC
GGTGCAACGGGTGCTGCCACAACCTTGCGAGGGCAGAATCAAACTGCCTC
TCTGTGTGTTGTATTTGTACCATCTGCCGAACTTGCTAAAGACAGAAGTT
GTATCTGATTCACGCGGGAGTAAGACTACGGGCAAGGGTTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1520:14039..16081-

>mRNA_Ecto-sp13_S_contig1520.3917.1 ID=mRNA_Ecto-sp13_S_contig1520.3917.1|Name=mRNA_Ecto-sp13_S_contig1520.3917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1520:14039..16081- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGACCACTTCGGAAACCGCTTCGCCGACCACAACAGACCGGGAGAT
CGATTCACCATCCATGGCCCCCACGAGCATGGTCGACTCTACCTCGGCTC
CTACCGACGCCATGCCGACGACCGTGGAAACCGAGTCGCCGACCACAACA
GACCGGGAGCTCCCTGCAGCATCTATGGCCCCGACCAGCGTGGTCGACTC
TACCTCGGCTCCTACCGACGCCATGCCGACGACCGTGGAAACCGCTTCGC
CGACCACAACAGACCGGGAGATCGATCCACCATCAATGGCGCCCACGAGC
GTGGTGGACTCTACCTCGGCTCCTACCGACGCTATGTCGACCACTCCGGA
AACCGCTTCGCCGACCACAACAGATCGGGAGATCGATTCACCATCTTTGG
CCCCCACCAGCGTGGTGGACCCTACCTCGGCTCCTACCGACGGAATGCCG
ACGACCGTGGAAACCGCTTCGCCGACCACAACAGACCGGGAGATCGACTC
ACCATCTATGGCCCCCACGAGCATGGTCGACTCTACCTCGGCTCCTACCG
ACGCCATGCCGACCACTCCGGAAACCGCTTCGCCGACCACAACAGACCGG
GAGATCGATTCACCATCTATGGCCCCCACCAGCGTGGTGGACCCTACCTC
GGCTCCGACTGACGGAATGCCGACCGCGACGGAAACTTCTTCGCCGACCA
TAACAGACCGGGAGATCGACTCACCATCTATGGCCCCCACCAGCGTGGTG
GAGTCCACCTCGGCTCCTACCGACGGAATGCCGACGACCGTGGAAACCGC
TTCGCCGACCACAACAGACCGGGAGATCGATTCACCATCGATGGCACCTA
CTACCTCCGATATCCTTGAGCCGTCGGTGTCGCCTACGCCGGGATCAACT
GGTTATGAGACTCCATCCCCTACTCCTAGTATGAGGGGGGTCGACAGAGA
GACTCAGTCTCCGACAACGAGCGATGGATCACGGGGCGGGCTCAACTTCG
AGACCCAATCACCAACTGCCAGCAACGACCTGTCGCGGGGAGGAATCGAC
TTCGAGACGCAGTCGCCAACCAGCACCTCGCGCGAGATCGCGACGGCCTC
TCCCACTTCTAGCACGTCGCGCGGTATTCCGATTATGTCCGCTTCTCCCA
CATCTGGCGTGACCTTCACGGAATGCACTCCCGGCGACTCTGACACTTGT
TACAACCAGCTGGAGCCTTCGATGAAGGGCCTTCTGGTGGAGCGGAGCCG
CGGACTGACTTGCGAGGAGATTTGTCTCGTCGGCGGTGGTTTGTGGTGCG
ACGCCTTGGGGCTCAGCGGCTGCCGCTTCTGCGCGACAAGCTGCGACAAC
TTCTGTACCGAGCAGGGCCTTCCCGATGACTGCGAGTGCATCGAGTGCTA
A
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