mRNA_Ecto-sp13_S_contig15195.3915.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15195.3915.1
Unique NamemRNA_Ecto-sp13_S_contig15195.3915.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.380e-40
Identity = 98/181 (54.14%), Postives = 115/181 (63.54%), Query Frame = 1 
Query:    1 YTTPSRLGRGDQQQPPPYRTPGRDEKKQTASAAGAKKERTANGVSKLLPKRAC-------------------------QMGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLLRSDSDGEDEEEGQHVDDGGLVGTDRTAGKLQVVVSGPREFVVHVGQLLAEMGVPSGCMVLLD 468
            Y+T +R G G  +Q      PGR+EKK++A+ AGAKKER   GV KLL  R                           Q+G GLV+G VNREIL T FGEALI+SIAAYN QRA+NSL  SDSD  D +EG+  DD  L+GTD+TAGKLQVVVSGP  FV +V QLL EMGVP+G  VLLD
Sbjct: 1311 YSTLARDG-GRDEQXXXXXXPGREEKKRSAADAGAKKERAPTGVGKLLTTRTWRNSKWNESPTTSGRRRAPMQDTSNYQVGDGLVRGRVNREILETVFGEALISSIAAYNRQRALNSLACSDSDVGDNKEGEGEDDRDLIGTDQTAGKLQVVVSGPTAFVANVKQLLTEMGVPAGSTVLLD 1490
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BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.980e-38
Identity = 94/181 (51.93%), Postives = 106/181 (58.56%), Query Frame = 1 
Query:    1 YTTPSRLGRGDQQQPPPYRTPGRDEKKQTASAAGAKKERTANGVSKLLPKRAC-------------------------QMGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLLRSDSDGEDEEEGQHVDDGGLVGTDRTAGKLQVVVSGPREFVVHVGQLLAEMGVPSGCMVLLD 468
            Y TPSR G GD+Q            +      A  K++RT  GV KLLPK+                           Q+G GLV+G VNREIL T FGEAL T IAA N QR V SLLRSDSD  DE+EGQ  DDG L  TD+T+ KLQVVVSGP EFV +V QLL +MGVPSGCMVLLD
Sbjct: 1314 YRTPSRTGHGDEQXXXXXXXXXXXSR-----PADGKEKRTTTGVGKLLPKKTWRNLRRSDSSTPGAHRRPPIQDSSTYQVGDGLVRGKVNREILETVFGEALTTPIAADNRQREVKSLLRSDSDISDEKEGQDEDDGDLTSTDQTSRKLQVVVSGPSEFVANVWQLLDQMGVPSGCMVLLD 1489
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BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.480e-35
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:  160 QMGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLLRSDSDGEDEEEGQHVDDGGLVGTDRTAGKLQVVVSGPREFVVHVGQLLAEMGVPSGCMVLLD 468
            Q+G GLV+G VNREIL   FGEAL++SIAAYN QRA+NSL  SDSD  DE+EGQ  DDG L+GTD+TAGKLQVVVSGP  FV +V QLL +MGVP+G  VLLD
Sbjct:  237 QVGDGLVRGRVNREILENVFGEALLSSIAAYNRQRALNSLACSDSDVGDEKEGQGEDDGELIGTDQTAGKLQVVVSGPTAFVANVKQLLTQMGVPAGSTVLLD 339
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BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Match: D8LN37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN37_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.160e-19
Identity = 64/144 (44.44%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   19 LGRGDQQQPPPYRTPGRDEKKQTASAAGAKKERTANGVSKLLPKRAC-------------------------QMGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLLRSDSDGEDEEEGQHVDDGGLVGTDRTAGKLQ 375
            +GRGDQQ PP YRTP RD      S     K++      K LPK+                           Q+G GLV+G VNREIL T FGEAL TSIA YN+ +  + LL SDSD E E++GQ  DD  L+GTD+T  KLQ
Sbjct:    1 MGRGDQQ-PPLYRTPCRD-----GSGHAEDKDKMILITGKPLPKKTWRRMKRAESSTPGARRHARTQDTSTYQVGDGLVRGKVNREILQTVFGEALKTSIAVYNSPQEWDGLLFSDSDDEGEKKGQSKDDADLIGTDQTTWKLQ 138
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BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.020e-14
Identity = 47/112 (41.96%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  163 MGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLL----------RSDSDGEDEEEGQHVDDGGLVGTDRTAGKLQVVVSGPREFVVHVGQLLAEMGVPSGCMVLLD 468
            +G GL++G V REIL  AFG AL+  +  +  Q                 + D    ++  G  +DD  L GTD   GKLQVVVSGP  FV +V  +LAEMGVPS  +V LD
Sbjct:    9 LGDGLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHXXXXXXXXXXXXKRDEGSPEDARGITLDD--LAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFLD 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15195.3915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7J2_ECTSI1.380e-4054.14Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI4.980e-3851.93Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JTF1_9PHAE1.480e-3569.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN37_ECTSI2.160e-1944.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9F0_9PHAE3.020e-1441.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15195contigEcto-sp13_S_contig15195:1807..3560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.3
Seed ortholog evalue6.6e-29
Seed eggNOG ortholog2880.D7G7J1
Model size475
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
Cds size309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.5116723-UTR-Ecto-sp13_S_contig15195:1806..19591681462808.5116723-UTR-Ecto-sp13_S_contig15195:1806..1959Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15195 1807..1959 +
1681462808.5240757-UTR-Ecto-sp13_S_contig15195:2755..27641681462808.5240757-UTR-Ecto-sp13_S_contig15195:2755..2764Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15195 2756..2764 +
1681462808.5550318-UTR-Ecto-sp13_S_contig15195:3556..35601681462808.5550318-UTR-Ecto-sp13_S_contig15195:3556..3560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15195 3557..3560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462808.5340526-CDS-Ecto-sp13_S_contig15195:2764..29771681462808.5340526-CDS-Ecto-sp13_S_contig15195:2764..2977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15195 2765..2977 +
1681462808.5447512-CDS-Ecto-sp13_S_contig15195:3460..35561681462808.5447512-CDS-Ecto-sp13_S_contig15195:3460..3556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15195 3461..3556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15195.3915.1prot_Ecto-sp13_S_contig15195.3915.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15195 2765..3556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15195.3915.1

>prot_Ecto-sp13_S_contig15195.3915.1 ID=prot_Ecto-sp13_S_contig15195.3915.1|Name=mRNA_Ecto-sp13_S_contig15195.3915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MGGGLVQGSVNREILNTAFGEALITSIAAYNNQRAVNSLLRSDSDGEDEE
EGQHVDDGGLVGTDRTAGKLQVVVSGPREFVVHVGQLLAEMGVPSGCMVL
LD*
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mRNA from alignment at Ecto-sp13_S_contig15195:1807..3560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15195.3915.1 ID=mRNA_Ecto-sp13_S_contig15195.3915.1|Name=mRNA_Ecto-sp13_S_contig15195.3915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15195:1807..3560+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATACCACTCCGTCCCGACTCGGTCGAGGGGATCAACAGCAGCCACCCCC
GTACCGCACTCCGGGTCGTGACGAGAAGAAGCAAACTGCCTCTGCAGCAG
GGGCCAAGAAAGAAAGGACAGCGAATGGCGTAAGCAAGCTACTTCCCAAG
AGGGTAAGACGCACAACTTGGCAGTACCGCACTGGAAAATTATCGTACGT
GAAAACCACGCCCAGACATAATACAGTCACACGGATGGTGCGCTGGCGTT
GTCCAGACAGTTGAATGGCGAGTTCCGGAGGTGGGATTTTTTCCGTGACT
GATCGCCAAAACTATTCAGCTATTCCCGATGGAAGCTATCTCTTGGGTTG
ATTGGTCGGCTCGACTACCCTGTAGCACGTTACCGTCGTGCTCTTCCTTG
TTGCCGTGCGGAAGGTGCAGTGAGGACAGCTTCTGAACAAAAGCGACATC
TAACGGGGGATCGTTTCGTCAAACGGTGAAAATGTAGATTTCACCCTGAT
ACTTTAAAGATCCAAGGCTTCCGGTTGCTCTTCGAGGGCACTGGCACTTT
TCTGCGCTGAACGACACATTCCCACGCGCTCAGCGCGATGGCATGCCAGA
GGAAAACGCCAAACAGTGTCGCTTCCGAAAGCTGTAATACAAGAGCAAGG
CCGTGGATGGTCGGGCCGTACCGCATCAAGGCAGGGGGTCTCGTTCGAGC
CCTTGATGCTGATGTTTGATGTGTGTCGTGTGTCTGAAGGCAACGACGGG
ATTAGCTTGGCTGCCCGGAAAAGTACTGGTGATGTTTATGTCATTCCATA
CCGCATATTAATGACCACACCTTGCGTGATGTCGTGGCGCATTGGACGTT
CCGACGGATGGCTATTGTACATGCTCCTGTAGCAGTAGGTGTACAGGGTG
TGTCACCAATGAGCCTACGCCCCGTCCGCCGGCTTTTTGTCATTGCCAGG
CGTGTCAAATGGGAGGTGGTCTTGTTCAAGGCAGCGTAAACCGGGAGATC
CTCAACACGGCCTTCGGCGAAGCCCTGATCACGTCAATCGCGGCGTACAA
CAACCAGCGAGCGGTGAACAGTCTTCTTCGCAGTGACAGCGACGGCGAGG
ATGAGGAGGAAGGACAACACGTGGACGATGGGGGCCTCGTTGGCACCGAC
CGAACCGCAGGGAAACTTCAGGTGACAGCTACAGAAAGCTGTTGGGTCGT
GGCCGGTATCTCCATGGTATTTTTTGTTCATAAAAAGGAGCAGGTACGAG
AGTGAAACCTGCTCTGAACCCGTCGACTGCATGTACGACTTGTGTCATTA
CCATTGTCTAGGAAAGCAGGAGTCGCAGCACCGTCACCACGCACCAGCGG
TGTCTCGGGTCTGGGGACATACCCTTCGACACTCCTTTGACTGCTTCTTG
GTCTTATGGAGAGTTTGGGAACTCGTATTTGGCGAATTGCTCTCATGAAA
TGAAATGAAATGAACTCTTCTTCCTCGCCAAGCTCAACTCGAGAAGCGCA
GTTAGTTATTGTTGTCGCCATCCTGTGTATGGACACCATCGGTGATTGAG
CTGGACAGCAGTTCACCGGGTATGTGCTGTAGTCTAGCATGTCGGTATTT
TCCGATATAAAAATGCGAGCGTTTTACATCGTGTCATTTGTGCTTCGCTG
TCAGGTGGTTGTTTCAGGGCCTAGAGAGTTCGTGGTCCACGTCGGGCAGC
TCCTTGCCGAAATGGGGGTCCCCTCTGGCTGCATGGTGTTGCTTGACTGA
TACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15195:1807..3560+

>mRNA_Ecto-sp13_S_contig15195.3915.1 ID=mRNA_Ecto-sp13_S_contig15195.3915.1|Name=mRNA_Ecto-sp13_S_contig15195.3915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15195:1807..3560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGTGGTCTTGTTCAAGGCAGCGTAAACCGGGAGATCCTCAACAC
GGCCTTCGGCGAAGCCCTGATCACGTCAATCGCGGCGTACAACAACCAGC
GAGCGGTGAACAGTCTTCTTCGCAGTGACAGCGACGGCGAGGATGAGGAG
GAAGGACAACACGTGGACGATGGGGGCCTCGTTGGCACCGACCGAACCGC
AGGGAAACTTCAGGTGGTTGTTTCAGGGCCTAGAGAGTTCGTGGTCCACG
TCGGGCAGCTCCTTGCCGAAATGGGGGTCCCCTCTGGCTGCATGGTGTTG
CTTGACTGA
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