mRNA_Ecto-sp13_S_contig15187.3909.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15187.3909.1
Unique NamemRNA_Ecto-sp13_S_contig15187.3909.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15187.3909.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.770e-58
Identity = 133/267 (49.81%), Postives = 157/267 (58.80%), Query Frame = 2 
Query:    2 ELMKQADSCRLYVPVWSLDGLLEGWQAVFPHVPETVVQERFGKVGDVARAVFDAKKLWQVHRKMQRAASKMDLGVLQRFC---RVGLVTLTRFRPIGVVAHFCVCRLAMKQVSRS*VLILLVST-PIM*PSKSFPRRNFAALASFVRTAFFGNDELGAKGVAERTAGFEIIAHKTLGGAGEQQGFDVRILEQCKQ*-RVCTRVNYSRFGVLKE-SFQGKSFPDTRHWNVLKYRPESTTLPAIDSFGVDGGSKTLWFFQMRSAGLPPK 784
            E MKQ  S R Y+P W LD L    QAVFPHVPET V+ERF KVG VARAVFDA+KL QV  KMQ AAS MDL +LQ+     R  +  ++  R    + H     L + +       +   S    +      P++ FA LASFV  AF  +DELG K  AER AGFE IAHKT+GGA EQQ FD+RIL +     +     N  R   +KE SF+G SFPD        YRP S    A DSFGVD GSKTLWFFQ++SAGLPPK
Sbjct:  194 EFMKQPGSRRFYMPPWCLDELFRCRQAVFPHVPETDVRERFSKVGGVARAVFDAEKLKQVCLKMQAAASNMDLNLLQQILSRSRDDVDQVSTDRSGDALLHL----LPIPETGFEEFSVDFASEFAHIVTLGELPKKEFAPLASFVGAAF-AHDELGDKVTAERAAGFETIAHKTIGGASEQQWFDMRILSRASSSTKSVLEGNRLRLSFVKEQSFEGNSFPDALVAGTY-YRPGSPNFAAADSFGVDSGSKTLWFFQVKSAGLPPK 454
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15187.3909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFB9_9PHAE2.770e-5849.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15187contigEcto-sp13_S_contig15187:165..1422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1258
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.9386866-UTR-Ecto-sp13_S_contig15187:164..1711681462807.9386866-UTR-Ecto-sp13_S_contig15187:164..171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15187 165..171 +
1681462807.9617999-UTR-Ecto-sp13_S_contig15187:504..14221681462807.9617999-UTR-Ecto-sp13_S_contig15187:504..1422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15187 505..1422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.9520788-CDS-Ecto-sp13_S_contig15187:171..5041681462807.9520788-CDS-Ecto-sp13_S_contig15187:171..504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15187 172..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15187.3909.1prot_Ecto-sp13_S_contig15187.3909.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15187 172..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15187.3909.1

>prot_Ecto-sp13_S_contig15187.3909.1 ID=prot_Ecto-sp13_S_contig15187.3909.1|Name=mRNA_Ecto-sp13_S_contig15187.3909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MKQADSCRLYVPVWSLDGLLEGWQAVFPHVPETVVQERFGKVGDVARAVF
DAKKLWQVHRKMQRAASKMDLGVLQRFCRVGLVTLTRFRPIGVVAHFCVC
RLAMKQVSRS*
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mRNA from alignment at Ecto-sp13_S_contig15187:165..1422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15187.3909.1 ID=mRNA_Ecto-sp13_S_contig15187.3909.1|Name=mRNA_Ecto-sp13_S_contig15187.3909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15187:165..1422+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGTTGATGAAACAAGCCGATTCCTGTCGGTTGTATGTGCCAGTGTGGA
GCCTGGATGGGCTGTTGGAAGGTTGGCAAGCTGTTTTCCCTCATGTGCCA
GAAACCGTCGTGCAGGAACGCTTTGGTAAGGTCGGAGATGTGGCTAGAGC
AGTCTTCGATGCGAAAAAGCTCTGGCAGGTTCACCGTAAAATGCAAAGAG
CGGCTTCTAAAATGGATCTAGGTGTTCTGCAACGATTCTGTCGCGTGGGC
TTGGTGACGCTGACCAGATTTCGACCGATAGGAGTGGTGGCGCACTTTTG
CGTTTGTCGCCTAGCAATGAAACAGGTTTCGAGGAGTTGAGTGTTGATTT
TGCTTGTGAGTACGCCCATAATGTGACCTTCGAAGAGCTTCCCAAGAAGG
AATTTTGCTGCACTTGCAAGCTTTGTCCGGACTGCTTTCTTCGGGAACGA
CGAATTAGGCGCCAAGGGTGTAGCTGAGCGCACGGCCGGGTTTGAAATTA
TCGCTCACAAAACACTCGGGGGCGCTGGCGAGCAGCAAGGCTTTGACGTG
AGAATCCTGGAGCAGTGCAAGCAGTAGAGAGTCTGTACGCGAGTGAACTA
TTCGAGGTTTGGTGTTCTGAAGGAGTCATTCCAAGGCAAAAGTTTTCCAG
ATACACGTCACTGGAACGTGCTAAAATACAGACCTGAAAGCACGACTCTT
CCAGCGATTGATTCGTTCGGTGTGGACGGCGGCAGCAAGACCTTGTGGTT
CTTTCAAATGAGATCTGCAGGCTTACCCCCTAAACGGATAACAAGGCAGT
CAAATGGAACCATGTAGAACAATGCTGGAGAAGTGCTAGGCTCCCCCACT
GCGCGTCAATCGAGAAAAATGTGTTTGCGTTTATAGTTCCGTGTGGCGTA
GTGTGAAACAAGGCCACGAAGACTAGCGAAAAGGATAGCGGTTGTGGCGA
TTGGCTGCAAGGCAACTGACGGTTTCAAGTCGGTCCCATTGTGATTGAAC
CACATAGCTTTTCTGACATCACAGCCTTTCCTGCTGGAGAAGTAGAGGTG
TGGAGATGTTTTTAAACGGCTGGCGACGGAAAATTTTGCACGGCCTAATA
TGACGCACGGACACCCACTCATCCGAACTTACCGTCGAGTGTGGAACTCG
ACGGTAAGATCGGATTTCATCAAGACAGATTTCTGGGTCGTAAACTTGTG
CGGACGCAAGAGCAGATTCAGTGGTTCAATCCAGGTCACGGGTTCCCACC
ACGTGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15187:165..1422+

>mRNA_Ecto-sp13_S_contig15187.3909.1 ID=mRNA_Ecto-sp13_S_contig15187.3909.1|Name=mRNA_Ecto-sp13_S_contig15187.3909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15187:165..1422+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACAAGCCGATTCCTGTCGGTTGTATGTGCCAGTGTGGAGCCTGGA
TGGGCTGTTGGAAGGTTGGCAAGCTGTTTTCCCTCATGTGCCAGAAACCG
TCGTGCAGGAACGCTTTGGTAAGGTCGGAGATGTGGCTAGAGCAGTCTTC
GATGCGAAAAAGCTCTGGCAGGTTCACCGTAAAATGCAAAGAGCGGCTTC
TAAAATGGATCTAGGTGTTCTGCAACGATTCTGTCGCGTGGGCTTGGTGA
CGCTGACCAGATTTCGACCGATAGGAGTGGTGGCGCACTTTTGCGTTTGT
CGCCTAGCAATGAAACAGGTTTCGAGGAGTTGA
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