mRNA_Ecto-sp13_S_contig15183.3906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15183.3906.1
Unique NamemRNA_Ecto-sp13_S_contig15183.3906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15183.3906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15183contigEcto-sp13_S_contig15183:3209..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categorysignal peptide
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.7953713-UTR-Ecto-sp13_S_contig15183:3208..34101681462807.7953713-UTR-Ecto-sp13_S_contig15183:3208..3410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15183 3209..3410 -
1681462807.8269672-UTR-Ecto-sp13_S_contig15183:3848..39471681462807.8269672-UTR-Ecto-sp13_S_contig15183:3848..3947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15183 3849..3947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.80652-CDS-Ecto-sp13_S_contig15183:3410..36381681462807.80652-CDS-Ecto-sp13_S_contig15183:3410..3638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15183 3411..3638 -
1681462807.816687-CDS-Ecto-sp13_S_contig15183:3761..38481681462807.816687-CDS-Ecto-sp13_S_contig15183:3761..3848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15183 3762..3848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15183.3906.1prot_Ecto-sp13_S_contig15183.3906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15183 3411..3848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15183.3906.1

>prot_Ecto-sp13_S_contig15183.3906.1 ID=prot_Ecto-sp13_S_contig15183.3906.1|Name=mRNA_Ecto-sp13_S_contig15183.3906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MHTFNLSCFIASILLALLARLSNAQQLIEVGSWADDIDLGSQNATMLAVA
EEHCGPTAADITTCNLRTAFFYASSLDGSDVEIFLNTTQHELEMAQSVSI
QVSG*
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mRNA from alignment at Ecto-sp13_S_contig15183:3209..3947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15183.3906.1 ID=mRNA_Ecto-sp13_S_contig15183.3906.1|Name=mRNA_Ecto-sp13_S_contig15183.3906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15183:3209..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCAGCGCGTGTCCGGAAAGGGAGAGCTTGGTGGCTTTGGGGAAAACT
GCATGGTTCTCCTGGTGGTGATACCCGGCCGTTGATTTTGCAACTTAGTA
TGCATACCTTCAACCTCAGTTGTTTCATCGCGAGCATCTTGTTGGCGTTG
CTGGCGCGCCTCAGCAATGCTCAGCAACTCATCGAGGTAAGACGTCCAAA
ACATGCGCTCCGATATTTTACAAGCGTTGGTTTCAAGGGCACCCGTCCTG
CCTTCGAGCTGGTTGATCGACCCCTCTTTTCCCTGTGTTGTACGACGGGT
TCCCATCAGGTCGGTTCATGGGCCGATGACATCGATCTCGGTTCACAAAA
TGCCACCATGTTGGCGGTTGCCGAAGAACACTGCGGGCCAACTGCAGCCG
ACATCACAACCTGCAACCTACGGACAGCTTTCTTCTATGCGTCTTCATTG
GATGGGAGCGACGTGGAAATTTTCCTCAACACCACGCAGCACGAATTGGA
AATGGCACAGAGTGTATCCATCCAGGTTTCGGGGTAGGTTGTCGTCGGCC
ACCACATTGTACCGTACGTAAATTGCACCGTACATGCTGTAGACTTCAAG
CCTCCCTCAGGAGTGGGGTAATAGAGAGGACCGCGGCAAGGGGTGATGCA
AGAACAAGGAAAAAGCAAGGAAAGATGGATGTCGTACGCATACCACATAT
TTTTAGGCTACTTATTTTAGATAGGGAGGAGTAAGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15183:3209..3947-

>mRNA_Ecto-sp13_S_contig15183.3906.1 ID=mRNA_Ecto-sp13_S_contig15183.3906.1|Name=mRNA_Ecto-sp13_S_contig15183.3906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15183:3209..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATACCTTCAACCTCAGTTGTTTCATCGCGAGCATCTTGTTGGCGTT
GCTGGCGCGCCTCAGCAATGCTCAGCAACTCATCGAGGTCGGTTCATGGG
CCGATGACATCGATCTCGGTTCACAAAATGCCACCATGTTGGCGGTTGCC
GAAGAACACTGCGGGCCAACTGCAGCCGACATCACAACCTGCAACCTACG
GACAGCTTTCTTCTATGCGTCTTCATTGGATGGGAGCGACGTGGAAATTT
TCCTCAACACCACGCAGCACGAATTGGAAATGGCACAGAGTGTATCCATC
CAGGTTTCGGGGTAG
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