mRNA_Ecto-sp13_S_contig15176.3903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig15176.3903.1
Unique Name	mRNA_Ecto-sp13_S_contig15176.3903.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 7.750e-80
Identity = 115/120 (95.83%), Postives = 115/120 (95.83%), Query Frame = 1

Query:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILK--INGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTR LK  INGDKIGEYESYPGST NSFGIQENGVHTV MESVGIDADDWISLLEVRFMVDP
Sbjct:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMVDP 120

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 2.270e-75
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 1

Query:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILK--INGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEI+FTFDSPQDITDVQVAFWKGDERTR LK  INGDKIGEYESYPGST NSFGIQENGVHTVTMESVGID DDWISLLEVRFMVDP
Sbjct:  283 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMVDP 402

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.270e-46
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1

Query:    4 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILK--INGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            GCLP LA DG+  +D ESRWSCAE+IVPDGGQCEI FTF  PQ++  +QV FWKG+ERTR LK  ING+K GE++S+PGS  + F +    VHTVT+ES+G+D D+WISLLEV FMV+P
Sbjct:  224 GCLPVLATDGI-TDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEVIFMVEP 341

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.880e-33
Identity = 60/119 (50.42%), Postives = 77/119 (64.71%), Query Frame = 1

Query:    4 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILKI--NGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            GC P    DG+  E  ESRWSCA +IVP GG C+I + F  PQDI D+QVAFWKGDER R L++  +G     +ESY GST N  G+   G+ +V +ESV +  ++WISL+EV   V P
Sbjct:  108 GCTPANTRDGISNE-AESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEVLIFVSP 225

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.010e-32
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRIL--KINGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            +GC      DG+  E  ESRWSCA ++VPD G C+I FTF  PQ I D+QVAFWKG++RTR L   +NG+    +ESY  ST N+ G+  N   TV +ES  + +D+WISL+EV   V P
Sbjct:   55 LGCTATNTRDGIFSE-IESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLIFVTP 173

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.230e-31
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 1

Query:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILK--INGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            +GC      DG+  E  ESRWSCA ++V D G C+I FTF  PQ I D+QVAFWKG+ERTR L+  ING+    +ESY  +T N+ G+    V TV +ESV + +D+WISL+EV   V P
Sbjct:  119 LGCTAANTRDGIFSE-IESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 237

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 8.260e-30
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1

Query:    4 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILKI--NGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            GC  + A DG+  E  ESRWSCA +++ D G C+I F+F  PQ+I D+QVAFWKG+ER R L++  NG+    +ESY  ST N+ G+  N  +TV +ESV + +++WISL+EV   V P
Sbjct:  189 GCAANNARDGISTE-IESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFVTP 306

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.230e-29
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 1

Query:    4 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILKI--NGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMV 348
            GC    AHDG+  E  ESRWSCA  +VPD G C+I F+F  PQDI D+QVAFW+G+ERTR + I  +G+    +ESY  ST N+ G+      TV +ESV + +D+WISLLEV   V
Sbjct:  192 GCAAIKAHDGIISE-IESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIFV 307

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.240e-29
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 1

Query:    4 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILKI--NGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEV 336
            GC P    DG+  E TESRWSCA +IVP GG C+I + F  PQDI D++VAFW GDER R L++  +G     +ESY GST NS G+   G+ TV +ESV +  ++WISL+EV
Sbjct:  514 GCSPANTRDGISNE-TESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625

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BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.040e-29
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 1

Query:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRILK--INGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVGIDADDWISLLEVRFMVDP 354
            +GC      DG+  E  ESRWSCA ++V D G C+I FTF  PQ I D+QVAFWKG+ERTR L+  ING+    +ESY  +T N+ G+    V TV +ESV + +D+WISL+EV   V P
Sbjct:  370 LGCTAANTRDGIFSE-IESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 488

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig15176.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCQ5_ECTSI	7.750e-80	95.83	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
A0A6H5J8U9_9PHAE	2.270e-75	95.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFX1_9PHAE	5.270e-46	63.87	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D7G3F6_ECTSI	1.880e-33	50.42	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FI77_ECTSI	3.010e-32	49.17	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5F4_ECTSI	3.230e-31	50.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0S3_ECTSI	8.260e-30	47.90	LNR domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FI81_ECTSI	1.230e-29	51.28	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JTT4_9PHAE	1.240e-29	52.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G4F9_ECTSI	2.040e-29	50.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig15176	contig	Ecto-sp13_S_contig15176:1549..3107 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	64.7
Seed ortholog evalue	3.3e-08
Seed eggNOG ortholog	2880.D7G2Y6
Model size	357
Hectar predicted targeting category	other localisation
Exons	3
EggNOG free text desc.	regulation of response to stimulus
EggNOG OGs	COG4886@1,KOG0619@2759
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-03_001980.1
Cds size	357
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462807.516726-CDS-Ecto-sp13_S_contig15176:1548..1572	1681462807.516726-CDS-Ecto-sp13_S_contig15176:1548..1572	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15176 1549..1572 -
1681462807.5265086-CDS-Ecto-sp13_S_contig15176:1840..1981	1681462807.5265086-CDS-Ecto-sp13_S_contig15176:1840..1981	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15176 1841..1981 -
1681462807.534789-CDS-Ecto-sp13_S_contig15176:2915..3107	1681462807.534789-CDS-Ecto-sp13_S_contig15176:2915..3107	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig15176 2916..3107 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig15176.3903.1	prot_Ecto-sp13_S_contig15176.3903.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig15176 1549..3107 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig15176:1549..3107-
coding sequence from alignment at Ecto-sp13_S_contig15176:1549..3107-

protein sequence of mRNA_Ecto-sp13_S_contig15176.3903.1

>prot_Ecto-sp13_S_contig15176.3903.1 ID=prot_Ecto-sp13_S_contig15176.3903.1|Name=mRNA_Ecto-sp13_S_contig15176.3903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQ
VAFWKGDERTRILKINGDKIGEYESYPGSTVNSFGIQENGVHTVTMESVG
IDADDWISLLEVRFMVDP*

mRNA from alignment at Ecto-sp13_S_contig15176:1549..3107-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig15176.3903.1 ID=mRNA_Ecto-sp13_S_contig15176.3903.1|Name=mRNA_Ecto-sp13_S_contig15176.3903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15176:1549..3107- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTGCCTTCCTGATCTCGCCCACGATGGCGTCGGCGAGGAGGACAC
GGAGTCGAGGTGGTCGTGTGCCGAGGAGATTGTGCCCGACGGAGGCCAGT
GCGAGATCACCTTCACATTCGACAGCCCCCAAGATATCACCGACGTGCAG
GTTGCCTTCTGGAAGGGAGACGAGCGCACTCGCATCCTCAAGGTGAAATA
TCAAGAATGATGGCCCCATGATGGAATGGAAGAAAGCATACTGTAGCTAC
ATTGATGTGTCGAAAACCGAGTCAACGAAAACGGATCTAGATGATAAATG
TTTTCCATCGCTTGATGTTTGGGAGTAGACGAGCCTAGATTTTGTCCCCG
CCCCCCGTGATAGGAAAGCGTCCTCGGGTCGATGTGGCAGCGGCGTTGAA
ACATACGTCATACACCTGTGGGTTGGATAGAAGAGCAAGGCGTGCTGGTT
CTTGTTAGTTGCTGATGCGGCTGCCGCAGTTGCTTTTGGTCGTCGAGCCA
CTGAAGATCACCTTGTACGGGTAAGTGCCACCCATACAGGCTACGGTTTG
TGGTACGACAGTCGCGGAATCCGCGCAGCTCGCCCTTCACGCCGTACGCC
GGCTCACGATACCGTATGTACTTGGTGCAAAGTAGTTGCTCCATGGTTGG
GAAGGCCTGGACGCGATTCGTCCTGACACTAGAATGCGAGGCCTATCCTC
AAGTGGCCACCGAAGCCTGGCTGTATTAGTTAACATGATATATTCACTGG
TGGCTATAGATGTTGTTGGTTTCTCGACGTCTCTTGGTACGCCGGGTCCG
GCTTGTGCCTCCGTTGTTGGAGCAAAGGTGCCTCCTCGATGCCCTTCATC
CTCCCAAGAAAAGCGCATGCGGTCCATCTCTCTGATGTTTGATAGTGCGG
ATGCCGCCTTTTCTGTTGGCGGCTCGTTAAAACCGTTTCCACATCCCCGA
CACACCACAAACCGAACAAGGATGGGCGCAAAGGAACCACAAGTGCCTTA
GCAGACTTTTTCAACCCAGGCGCAGCTTGTCCGCAAAATATCGCTTGATC
GAAGCTAGGGTTCTAAGTTACCTCAAACAAAACGTCACCACCATCCGAAT
CGCTCTCCCCGGAACTGCAGGTGAAGATAAACGGCGATAAGATCGGCGAG
TACGAGTCCTATCCCGGATCTACCGTCAACTCGTTCGGAATCCAGGAGAA
CGGCGTGCACACCGTTACCATGGAGTCCGTCGGCATCGACGCGGACGACT
GGATCAGCCTGCTCGAGGTACCAGAGCAGGCATTTCAGTGTATTCTTGTC
CGGATTGGGAAAGAAGTGTTGCCAGCGCAGACGATCATGCTTCTCGCCAT
GTTTGCCACTTGCAGCTTTCTCCAGCGCCTCTTGACATCTACCAGCACGG
TCAGGGGTACCCATTTAGCTCGGTTTGGTCGCGCATGAGCAGGTCGGTGA
CCAAGAATAAATCTTGGTAGCTCGAATCGCTAAACGAAGTACGTGAACTC
ACAGCTTTCATCTCGATACTCTGAACGTCTGCCAGGTGCGCTTCATGGTG
GACCCTTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15176:1549..3107-

>mRNA_Ecto-sp13_S_contig15176.3903.1 ID=mRNA_Ecto-sp13_S_contig15176.3903.1|Name=mRNA_Ecto-sp13_S_contig15176.3903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15176:1549..3107- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTGCCTTCCTGATCTCGCCCACGATGGCGTCGGCGAGGAGGACAC
GGAGTCGAGGTGGTCGTGTGCCGAGGAGATTGTGCCCGACGGAGGCCAGT
GCGAGATCACCTTCACATTCGACAGCCCCCAAGATATCACCGACGTGCAG
GTTGCCTTCTGGAAGGGAGACGAGCGCACTCGCATCCTCAAGATAAACGG
CGATAAGATCGGCGAGTACGAGTCCTATCCCGGATCTACCGTCAACTCGT
TCGGAATCCAGGAGAACGGCGTGCACACCGTTACCATGGAGTCCGTCGGC
ATCGACGCGGACGACTGGATCAGCCTGCTCGAGGTGCGCTTCATGGTGGA
CCCTTAG