mRNA_Ecto-sp13_S_contig15173.3902.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15173.3902.1
Unique NamemRNA_Ecto-sp13_S_contig15173.3902.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 1.410e-146
Identity = 276/294 (93.88%), Postives = 280/294 (95.24%), Query Frame = 1
Query:  673 GLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGDTSTMAVFSSS--SSSASGTVEACGGRGVGEEELEEYDRDVISACWPSVLKAASAAFAT 1539
            GLDKAAVGAYLGEAG KRV+GRGXXXXXXXXX  XXXXXXXXXXXXXXXXXXX   RT GGVS RGAAA VYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHR+CVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGG DLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGD +TMAVFSSS  SSSASG VEACGGRGVGEEEL+EYDRDVISACWPSVLKAASAAFAT
Sbjct:  509 GLDKAAVGAYLGEAGAKRVNGRGXXXXXXXXXEGXXXXXXXXXXXXXXXXXXXXXXRTLGGVSARGAAAAVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRDCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGHDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGDMNTMAVFSSSNTSSSASGKVEACGGRGVGEEELQEYDRDVISACWPSVLKAASAAFAT 802          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A7S3YER2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YER2_HETAK)

HSP 1 Score: 226 bits (576), Expect = 5.010e-67
Identity = 137/332 (41.27%), Postives = 177/332 (53.31%), Query Frame = 1
Query:  514 GARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATPGLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGDTSTMAVFSSSSSSASGTVEACGGR---GVGEEELEEYDRDVISACW 1500
            GARAF   P++GL+ LQ +G+                  L+ +  A FLR  PGL K  +G YLG AG    D                                          G AA  Y+GDTEEFH  VL+AFV +FDF GQ +L +LRM+L AFRLPGEAQQIDR+L AFA   H  C E  +G+ A+ D  +LL FS++ML TDLHN NIRPEKRM+   FVR N NYG  IS GRDLP + LE++Y +I+E+P+ T G GPD  VT   W+DL+R+           + ++ A G +   GG    G  + E  +YDRD++   W
Sbjct:    3 GARAFNAAPKKGLQFLQAQGML--------------PDPLEPEAAARFLRTAPGLHKQKIGEYLGAAGRPATD---------------------------------------PATGKAA--YRGDTEEFHQAVLQAFVRSFDFAGQPLLGALRMYLSAFRLPGEAQQIDRVLQAFADHAHARCREGRQGLFATPDACFLLCFSLVMLQTDLHNANIRPEKRMTLEQFVRQNRNYGAGISRGRDLPREALEALYRAIREEPLHTLGDGPDGQVTVDRWRDLMRQ-----------AETNDALGMMLVHGGGDCYGHPDAEALQYDRDILMLVW 268          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A7S1TTF5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTF5_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.600e-63
Identity = 140/293 (47.78%), Postives = 166/293 (56.66%), Query Frame = 1
Query:  487 RRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATPGLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKE-QPIATSGGGPDDAVTAHGWQDLLRR 1362
            R RK    RGA  F KKPR G   LQ +GL  +               L    VA+FLR+ PG+DK AVG YLG  G   VD                                  T  G++T  A       DT  FHA VL AFV +FDFRGQ IL +LRMFL AFRLP EAQQIDR+L AFA+    +C E  RG+ A+ DV YLLSFS+IMLNTDLHNPNI+PE+RM+   F R+N NYG +IS GRDLPAD LE +Y SI+E Q I T   GP  A+T H W+DL+R+
Sbjct:  150 RLRKEEFARGAELFHKKPRRGFNYLQGKGLLPK--------------PLTPTSVASFLRSAPGMDKRAVGEYLGTMGSVEVD----------------------------------TDTGMTTHVA-------DTVAFHAAVLTAFVKSFDFRGQPILEALRMFLAAFRLPSEAQQIDRVLEAFAKEACESCAEGMRGLFATQDVPYLLSFSIIMLNTDLHNPNIKPERRMTLADFKRSNTNYGREISEGRDLPADLLEDIYQSIQEDQIITTDDDGPAGAITHHRWRDLMRQ 387          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A6H5L0P9_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P9_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 6.700e-58
Identity = 108/138 (78.26%), Postives = 111/138 (80.43%), Query Frame = 1
Query: 1126 IMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGDTSTMAVFSSSSSSASGTVEACGGRGVGEEELEEYDRDVISACWPSVLKAASAAFAT 1539
            IMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHG                           +EACGGRGVG+EELEEYDR+VISACWPSVLKAASAAFAT
Sbjct:    4 IMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHG---------------------------MEACGGRGVGKEELEEYDREVISACWPSVLKAASAAFAT 114          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A5D6XRC6_9STRA (SEC7 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRC6_9STRA)

HSP 1 Score: 201 bits (511), Expect = 5.190e-52
Identity = 129/296 (43.58%), Postives = 162/296 (54.73%), Query Frame = 1
Query:  487 RRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATP-GLDKAAVGAYLGEAG--VKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIAT-SGGGPDDAVTAHGWQDLLRR 1362
            R+RK     G + F +KP  G+K LQ+                   + LDA  +AAFLR+ P GL K AVG YLG  G  VK  +                                             A +++ DT  FH  VL  FV++F+F G+ I+A+LRMFL +FRLPGEAQQIDRIL+ F+ +V+  C E  R +LASADVAYLLSFS+IMLNTDLHNPNIRPEK+M+   FVRNN NYG D+S GRDLP D+L  +Y +I    I T   GG    VT   W+DLL +
Sbjct:  553 RQRKKFFQHGIQEFNRKPLAGIKYLQQNAFL--------------PTPLDAPALAAFLRSLPQGLHKDAVGMYLGAMGKDVKEFE--------------------------------------------RAEIHEADTMAFHRAVLAQFVESFNFEGESIVAALRMFLASFRLPGEAQQIDRILNTFSLQVYAQCRE--RSLLASADVAYLLSFSLIMLNTDLHNPNIRPEKKMTRDDFVRNNRNYGRDVSAGRDLPDDFLTELYAAIASDEIKTFEDGGRHGEVTTDRWKDLLHQ 788          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: K3WAR7_GLOUD (SEC7 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAR7_GLOUD)

HSP 1 Score: 197 bits (500), Expect = 1.350e-50
Identity = 124/298 (41.61%), Postives = 166/298 (55.70%), Query Frame = 1
Query:  481 KARRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATP-GLDKAAVGAYLGEAG--VKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIAT-SGGGPDDAVTAHGWQDLLRR 1362
            K R+RK     G + F +KP  G+K LQ+                   + LD+K +AAF+R+ P GL+K AVGAYLG  G  VK  +                                             A +++ DT +FH +VL  FV +F+F G+ I+A+LRMFL +FRLPGEAQQIDRIL+ F+ +V+  C +  R ++ SADVAYLLSFS+IMLNTDLHNPNIRPEK+M    F++NN+NYG ++S GRDLP D+L  +Y +I    I T   GG    VT   W+DLL +
Sbjct:  525 KKRQRKKFFQHGIQEFNRKPIAGIKYLQQNTFL--------------PTPLDSKSLAAFMRSLPPGLNKNAVGAYLGAMGKDVKEFE--------------------------------------------KAEIHEADTMDFHRDVLVDFVKSFNFEGENIVAALRMFLASFRLPGEAQQIDRILNTFSLQVYEQCRD--RFLMVSADVAYLLSFSLIMLNTDLHNPNIRPEKKMKLEDFIKNNKNYGKEVSNGRDLPDDFLTELYYTIANNEIKTFEDGGKHGEVTNDRWKDLLNQ 762          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A662WDP0_9STRA (SEC7 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDP0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.310e-48
Identity = 121/296 (40.88%), Postives = 165/296 (55.74%), Query Frame = 1
Query:  481 KARRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATP-GLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIAT-SGGGPDDAVTAHGWQDLLRR 1362
            K R+RK     G + F +KP  G+K LQ+                   + LD+  +A FLR+ P GL+K AVG YLG  G K V G                                +T            +++ DT +FH +VL  FV +F+F G+ I+ +LRMFL +FRLPGEAQQIDRIL+ F+ +V+  C E  R ++AS DVAYLLSFS+IMLNTDLHNPNIR +K+M  G F++NN+NYG ++S G+DLP D+L  +Y +I +  I T   GG    VT+  W+DLL +
Sbjct:  401 KKRQRKKFFQHGIQEFNRKPLAGIKYLQQNTFL--------------PTPLDSSSLATFLRSLPQGLNKNAVGVYLGAMG-KEVKG------------------------------FEKTE-----------IHEADTMDFHRDVLTNFVHSFNFEGESIVTALRMFLASFRLPGEAQQIDRILNTFSLQVYEQCRE--RFLMASVDVAYLLSFSLIMLNTDLHNPNIRGDKKMKLGDFLKNNKNYGQEVSKGQDLPDDFLTELYNTIAKDEIKTFEDGGKHGEVTSDRWKDLLNQ 638          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: D0MS23_PHYIT (SEC7 domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MS23_PHYIT)

HSP 1 Score: 190 bits (483), Expect = 2.360e-48
Identity = 121/296 (40.88%), Postives = 165/296 (55.74%), Query Frame = 1
Query:  481 KARRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATP-GLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIAT-SGGGPDDAVTAHGWQDLLRR 1362
            K R+RK     G + F +KP  G+K LQ+                   + LD+  +A FLR+ P GL+K AVG YLG  G K V G                                +T            +++ D+ +FH +VL  FV +F+F G+ I+A+LRMFL +FRLPGEAQQIDRIL+ F+ +V+  C E  R ++AS DVAYLLSFS+IMLNTDLHNPNIRP+K+M    F+RNN+NYG ++S G DLP D+L  +Y +I +  + T   GG    VT+  W+DLL +
Sbjct:  550 KKRQRKKFFQHGIQEFNRKPLAGIKYLQQNTFL--------------PTPLDSISLATFLRSLPQGLNKNAVGVYLGAMG-KEVKG------------------------------FEKTD-----------IHEADSMDFHRDVLTNFVRSFNFEGESIVAALRMFLASFRLPGEAQQIDRILNTFSLQVYEQCRE--RFLMASVDVAYLLSFSLIMLNTDLHNPNIRPDKKMKLADFIRNNKNYGLEVSKGLDLPEDFLTELYNTISKDEVKTFEDGGKHGEVTSDRWKDLLNQ 787          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A7R9U5Y8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Y8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.780e-48
Identity = 121/270 (44.81%), Postives = 145/270 (53.70%), Query Frame = 1
Query:  487 RRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATPGLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPI 1296
            R RKA L RGA  F KKPR GL  LQ   L  +               L  + VA FLR+ PGLDK AVG YLG+ G   VD                                          G AA V   DT  FHA  LE+FV +FDF GQ IL SLRMFL AFRLP EAQ+IDR+L AFA+  + +C E ++G+ A+ DV YLLSFS+IMLNTDLHNPN+RPE+RMS   F+RNN   G   +GG+DL   +L  +Y  +K   I
Sbjct:   44 RTRKAELGRGAAIFHKKPRLGLDYLQGRQLLPK--------------PLTPEAVALFLRSAPGLDKVAVGEYLGKMGTVEVD----------------------------------------ETGRAAHV--ADTVAFHAATLESFVKSFDFSGQSILPSLRMFLAAFRLPHEAQEIDRVLEAFAKEAYASCEEGSQGLFATPDVPYLLSFSIIMLNTDLHNPNLRPERRMSVEDFIRNNRGIG---AGGQDLDEAFLRGIYERVKSNEI 254          
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Match: A0A8K1CB56_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CB56_PYTOL)

HSP 1 Score: 189 bits (481), Expect = 4.310e-48
Identity = 120/292 (41.10%), Postives = 161/292 (55.14%), Query Frame = 1
Query:  487 RRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHXXXXXXXXRQSSLDAKEVAAFLRATP-GLDKAAVGAYLGEAGVKRVDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPGGVSTRGAAAVVYQGDTEEFHAEVLEAFVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEAARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGGDISGGRDLPADYLESVYTSIKEQPIAT-SGGGPDDAVTAHGWQDLL 1356
            R+RK    RG + F +KP  G+K LQ+                   S LD K +A FLR+ P GL+KA+VG YLG  G +  D                                 +T            +++ DT EFH +VL  FV +F+F G+ I+A+LRMFL +FRLPGEAQQIDRIL+ F+++V     +  R ++AS DVAYLLSFS+IMLNTDLHNPNIRPEK+M    F++NN NYG ++S  +DLP D+L  +Y +I ++ I T    G    VT   W+DLL
Sbjct:  523 RQRKKIFQRGIQEFNRKPLSGIKYLQQNSFL--------------PSPLDTKSLATFLRSLPPGLNKASVGIYLGAMGKEVKD-------------------------------FEKTE-----------IHEADTIEFHRDVLRCFVRSFNFEGESIVAALRMFLASFRLPGEAQQIDRILNTFSEQVFEQSRD--RFLMASVDVAYLLSFSLIMLNTDLHNPNIRPEKKMKLDDFIKNNRNYGEEVSKKQDLPNDFLTELYDAIAKEQIKTCEDDGKHGEVTMDRWKDLL 756          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15173.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA5_ECTSI1.410e-14693.88SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YER2_HETAK5.010e-6741.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TTF5_9STRA3.600e-6347.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5L0P9_9PHAE6.700e-5878.26SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6XRC6_9STRA5.190e-5243.58SEC7 domain-containing protein n=1 Tax=Pythium bra... [more]
K3WAR7_GLOUD1.350e-5041.61SEC7 domain-containing protein n=1 Tax=Globisporan... [more]
A0A662WDP0_9STRA2.310e-4840.88SEC7 domain-containing protein n=2 Tax=Nothophytop... [more]
D0MS23_PHYIT2.360e-4840.88SEC7 domain-containing protein n=13 Tax=Phytophtho... [more]
A0A7R9U5Y8_9STRA3.780e-4844.81Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8K1CB56_PYTOL4.310e-4841.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15173contigEcto-sp13_S_contig15173:93..2985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score465.3
Seed ortholog evalue3.6e-128
Seed eggNOG ortholog2880.D8LRA5
Model size1539
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
Exons4
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
Cds size1518
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.4356844-UTR-Ecto-sp13_S_contig15173:92..1131681462807.4356844-UTR-Ecto-sp13_S_contig15173:92..113Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15173 93..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.4514575-CDS-Ecto-sp13_S_contig15173:113..11241681462807.4514575-CDS-Ecto-sp13_S_contig15173:113..1124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15173 114..1124 +
1681462807.460271-CDS-Ecto-sp13_S_contig15173:1599..16921681462807.460271-CDS-Ecto-sp13_S_contig15173:1599..1692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15173 1600..1692 +
1681462807.4687178-CDS-Ecto-sp13_S_contig15173:2042..22571681462807.4687178-CDS-Ecto-sp13_S_contig15173:2042..2257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15173 2043..2257 +
1681462807.4836707-CDS-Ecto-sp13_S_contig15173:2786..29851681462807.4836707-CDS-Ecto-sp13_S_contig15173:2786..2985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15173 2787..2985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15173.3902.1prot_Ecto-sp13_S_contig15173.3902.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15173 114..2985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15173.3902.1

>prot_Ecto-sp13_S_contig15173.3902.1 ID=prot_Ecto-sp13_S_contig15173.3902.1|Name=mRNA_Ecto-sp13_S_contig15173.3902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=506bp
MLVAALADGAYAGPDRLSGARAACVAALTAALRRLHERCATVAATSAAAA
VTASGGGGDYGGPRVVDGRLGDSEQGRIGRERGGIGGAAIGGEGGGLAAL
ATDSGTLVESAVGTPTSALPAAAAAATAAAATAAATAAGTSSNGRLPSPS
RCRKARRRKAALTRGARAFAKKPREGLKLLQREGLFRRQQHQHQHQHQHR
QSSLDAKEVAAFLRATPGLDKAAVGAYLGEAGVKRVDGRGGGGGGVAVAA
VAEAVLPPSKERGEGGGGGGRTPGGVSTRGAAAVVYQGDTEEFHAEVLEA
FVDTFDFRGQGILASLRMFLGAFRLPGEAQQIDRILHAFAQRVHRNCVEA
ARGMLASADVAYLLSFSVIMLNTDLHNPNIRPEKRMSCGAFVRNNENYGG
DISGGRDLPADYLESVYTSIKEQPIATSGGGPDDAVTAHGWQDLLRRYGD
TSTMAVFSSSSSSASGTVEACGGRGVGEEELEEYDRDVISACWPSVLKAA
SAAFAT
back to top

mRNA from alignment at Ecto-sp13_S_contig15173:93..2985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15173.3902.1 ID=mRNA_Ecto-sp13_S_contig15173.3902.1|Name=mRNA_Ecto-sp13_S_contig15173.3902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15173:93..2985+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGGTCCAACCTGACCGAGATGCTGGTGGCGGCCCTGGCAGACGGCGC CTACGCGGGACCGGACCGGCTGTCAGGCGCTCGGGCCGCCTGCGTGGCCG CCCTGACAGCCGCCCTGCGGCGTCTTCACGAGCGGTGCGCTACGGTTGCT GCTACTTCTGCTGCTGCTGCGGTGACGGCGAGCGGCGGCGGCGGAGACTA CGGCGGCCCTCGTGTCGTCGATGGTAGACTGGGAGACAGCGAACAAGGAC GAATAGGAAGAGAGAGAGGAGGAATAGGAGGAGCAGCAATAGGGGGAGAA GGGGGAGGGCTGGCCGCATTAGCGACAGATTCGGGCACGCTTGTTGAAAG TGCCGTGGGGACGCCTACCTCGGCCCTGCCTGCAGCAGCAGCAGCAGCAA CGGCAGCAGCCGCGACAGCAGCCGCGACAGCCGCCGGTACATCAAGCAAC GGCCGTCTGCCGTCGCCCTCACGATGCCGCAAAGCGCGTCGGCGCAAGGC TGCGCTGACGCGTGGAGCGCGGGCGTTCGCAAAGAAGCCGAGGGAAGGGC TCAAGCTCCTTCAGCGAGAAGGATTGTTTCGGCGACAGCAGCACCAGCAC CAGCACCAGCACCAGCACCGGCAGTCGTCGTTGGATGCCAAGGAGGTTGC GGCGTTTTTGCGGGCGACCCCAGGCCTGGATAAGGCGGCCGTGGGCGCGT ACCTGGGAGAAGCGGGTGTGAAGAGGGTCGACGGCCGCGGCGGCGGCGGC GGCGGCGTTGCCGTAGCAGCGGTGGCGGAAGCGGTCTTGCCGCCGTCGAA GGAAAGAGGAGAAGGAGGAGGAGGGGGCGGGCGAACGCCTGGCGGGGTTA GCACCAGGGGCGCAGCCGCGGTCGTTTACCAGGGAGACACGGAAGAGTTT CACGCGGAGGTGCTCGAGGCGTTCGTGGACACGTTTGACTTCCGGGGGCA AGGGATCCTCGCCTCGCTGCGGATGTTTCTTGGGGCGTTCAGGCTCCCCG GGGAGGCTCAACAGATCGACCGGATCTTGCACGTGAGAGTGCCAGGTTTG ATGTTGTCCGTTCTGTGTCTTGCGTTCCGCAATCGTGTAGGCTTGGTGCG TCCCTCCGTGCCTACTGCTGCCGTGGCTGTGACGCTTTTGCTCTCGGCCC GAGCTGGCTGGGCGCTACCACCACATGGGGCCGTGGGTATGTGCTTGCGC GTCTGTTTGCTGTTTGTTGGAAGTTCTGTGTCTTTTGTTGTGATCAGGCT TGCGCATGCTCGAAAGAGGCTGTCTCGACGCATTCAAAGGCAGAATCGAA CACCAATGGGCCGAGTCGTCCCCGCAGCACTGGGCAACTCTACAGGGTCA GCTCAATGTTTTGTGTGATAAAGCATCTGATGGTGTCCTAAGTATTACAG CAGGCCTTTCTGCTCTCTCGGCGTACACCTCGTATTCTACAAGCGCTTGC GACCTCTGGCGATATTGTTGCGCTTGACGTGTGGTTTTTTCTCTTCCCGC GGGGCAGGCCTTCGCTCAGCGTGTCCACCGGAACTGCGTCGAGGCGGCGA GAGGGATGCTGGCTTCGGCGGATGTGGCCTATCTGCTAAGCTTCAGCGTG GTGAGCAGTAGCGACATCCTTTCCCTCCCCGCCTCGCAACGCTACAGCGT TCGGCATAAAGGATACGAATGACTCCGAGTGCGTCTAGCAGGAGTAGAAA CTGTGCGCTGTCTCGCAAGAGGCGATCGGTCAAATGGCCAAGCGACTAAG CCAAGCGAAATATGAGTATCCCCGCTCTCCCAGTTCACTGCTCGAACAGC TAAGGGATGCGAAACATTACCACACACACCTCTCCTAGACACGGGTGCTT TAGCGGCCCTTCCCGTATATTCATCACTGCACCCGCAAGCGTACGATACG TTTTGTTAGAGTTATCCCCTCGTCCTTCGGTTGCCCTCCCGGTGCGACAG ATCATGCTCAACACCGACCTCCATAATCCCAACATCCGCCCCGAGAAGCG CATGAGCTGCGGCGCGTTCGTCCGCAACAACGAGAACTACGGCGGGGACA TCAGCGGCGGGCGCGACCTGCCCGCCGACTACCTCGAGTCTGTCTACACG TCCATCAAGGAGCAGCCCATCGCCACCTCCGGCGGGGGGCCGGACGACGC TGTCACCGCCCACGGGTGAGGGAGGCAGCAAGAGAGAGAGAGACAGAGAG ATACAGAGAGACGGAGAGAGACAGTGAGACAGAGACAGAGACAGACAGGC AGAAAGACAGAAGCAGACAGACAGAGCTTGGCGTGCCAAGCCGGCGTGTT TTCAGGAGGGCCACGAGCGGCGGCACAAAGGCGGGCGAATGACATTCTTA GATCAACTCGTTCACGTTTTGAAGCCGATTGACTGCCGGCCCGCTGGTAT TCTTGTTCCGCTTTTGAAGTGCTGTTCCGAGGACATGGCAGTACCTGAGA GCTTGCCCTTTCCCCGCAGGTCCGAAAAGCCCTTTTTCTTTCTTTTTTTT CATTTGCACGAGTTTCACACGTCAATGAGTTCAGACCAGCTCTTGCTGGT CGACTCCGGGCTTGGTGCAGGGTGGCCAACACACGCAAGTTCGCCCAGCT CACTCCGGCACGGAAATCTTTATTCCTACGTGGTAACCCCCCCCCCCCAA TGCTTAATTTCGATGTTGCGTACGTGGGTACGAACTCGACGAAGATGGCA AGACCTGCTCCGGAGATACGGCGATACGAGCACCATGGCGGTGTTCAGCA GCAGTAGTAGCAGCGCCTCAGGCACGGTGGAGGCGTGCGGGGGGCGGGGA GTGGGGGAGGAGGAGCTGGAAGAGTACGACCGAGACGTGATTTCGGCGTG CTGGCCGTCAGTGCTCAAGGCTGCCTCAGCGGCGTTCGCCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15173:93..2985+

>mRNA_Ecto-sp13_S_contig15173.3902.1 ID=mRNA_Ecto-sp13_S_contig15173.3902.1|Name=mRNA_Ecto-sp13_S_contig15173.3902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15173:93..2985+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTGGCGGCCCTGGCAGACGGCGCCTACGCGGGACCGGACCGGCT
GTCAGGCGCTCGGGCCGCCTGCGTGGCCGCCCTGACAGCCGCCCTGCGGC
GTCTTCACGAGCGGTGCGCTACGGTTGCTGCTACTTCTGCTGCTGCTGCG
GTGACGGCGAGCGGCGGCGGCGGAGACTACGGCGGCCCTCGTGTCGTCGA
TGGTAGACTGGGAGACAGCGAACAAGGACGAATAGGAAGAGAGAGAGGAG
GAATAGGAGGAGCAGCAATAGGGGGAGAAGGGGGAGGGCTGGCCGCATTA
GCGACAGATTCGGGCACGCTTGTTGAAAGTGCCGTGGGGACGCCTACCTC
GGCCCTGCCTGCAGCAGCAGCAGCAGCAACGGCAGCAGCCGCGACAGCAG
CCGCGACAGCCGCCGGTACATCAAGCAACGGCCGTCTGCCGTCGCCCTCA
CGATGCCGCAAAGCGCGTCGGCGCAAGGCTGCGCTGACGCGTGGAGCGCG
GGCGTTCGCAAAGAAGCCGAGGGAAGGGCTCAAGCTCCTTCAGCGAGAAG
GATTGTTTCGGCGACAGCAGCACCAGCACCAGCACCAGCACCAGCACCGG
CAGTCGTCGTTGGATGCCAAGGAGGTTGCGGCGTTTTTGCGGGCGACCCC
AGGCCTGGATAAGGCGGCCGTGGGCGCGTACCTGGGAGAAGCGGGTGTGA
AGAGGGTCGACGGCCGCGGCGGCGGCGGCGGCGGCGTTGCCGTAGCAGCG
GTGGCGGAAGCGGTCTTGCCGCCGTCGAAGGAAAGAGGAGAAGGAGGAGG
AGGGGGCGGGCGAACGCCTGGCGGGGTTAGCACCAGGGGCGCAGCCGCGG
TCGTTTACCAGGGAGACACGGAAGAGTTTCACGCGGAGGTGCTCGAGGCG
TTCGTGGACACGTTTGACTTCCGGGGGCAAGGGATCCTCGCCTCGCTGCG
GATGTTTCTTGGGGCGTTCAGGCTCCCCGGGGAGGCTCAACAGATCGACC
GGATCTTGCACGCCTTCGCTCAGCGTGTCCACCGGAACTGCGTCGAGGCG
GCGAGAGGGATGCTGGCTTCGGCGGATGTGGCCTATCTGCTAAGCTTCAG
CGTGATCATGCTCAACACCGACCTCCATAATCCCAACATCCGCCCCGAGA
AGCGCATGAGCTGCGGCGCGTTCGTCCGCAACAACGAGAACTACGGCGGG
GACATCAGCGGCGGGCGCGACCTGCCCGCCGACTACCTCGAGTCTGTCTA
CACGTCCATCAAGGAGCAGCCCATCGCCACCTCCGGCGGGGGGCCGGACG
ACGCTGTCACCGCCCACGGATGGCAAGACCTGCTCCGGAGATACGGCGAT
ACGAGCACCATGGCGGTGTTCAGCAGCAGTAGTAGCAGCGCCTCAGGCAC
GGTGGAGGCGTGCGGGGGGCGGGGAGTGGGGGAGGAGGAGCTGGAAGAGT
ACGACCGAGACGTGATTTCGGCGTGCTGGCCGTCAGTGCTCAAGGCTGCC
TCAGCGGCGTTCGCCACG
back to top