prot_Ecto-sp13_S_contig15171.3900.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15171.3900.1
Unique Nameprot_Ecto-sp13_S_contig15171.3900.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length34
Homology
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.960e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE
Sbjct:  146 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 179          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A836CI66_9STRA (Sin-like protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI66_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHID 33
            ATN+A GV+R +ELHLTP+   +QMRP F+H+D
Sbjct:   95 ATNYAIGVVRDNELHLTPLSGILQMRPAFRHVD 127          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A197JWR2_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JWR2_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 2.580e-6
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            ATN+  GV+R+DE+HLTPIH  +Q+RP F+++D+
Sbjct:  152 ATNYLAGVLRNDEMHLTPIHGAVQLRPSFKYLDK 185          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A2T7PWM1_POMCA (RPC5_C domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PWM1_POMCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.180e-6
Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 ATN---FAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            ATN   +A GV+++DELHLTP+HA +QMRP F ++D+
Sbjct:  111 ATNTQRYAVGVLKNDELHLTPVHAVVQMRPSFDYLDK 147          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A1Y2GBG1_9FUNG (Sin-like protein conserved region-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GBG1_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 9.250e-6
Identity = 18/34 (52.94%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            ATN+  GV+R+DE+HLTP H  +Q+RP F+++D+
Sbjct:  271 ATNYLAGVLRNDEMHLTPFHGAVQLRPSFKYLDK 304          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A3N4LBE4_9PEZI (Uncharacterized protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LBE4_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 9.260e-6
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 0
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHID 33
            +TN+  GV R  +LHLTPIH+T+Q+RP F HID
Sbjct:  169 STNYMVGVFRHKQLHLTPIHSTLQLRPQFTHID 201          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: F0WMY9_9STRA (DNAdirected RNA polymerase III subunit RPC5like protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMY9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 9.270e-6
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 0
Query:    2 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            +N+A G+IR  +LHLTP+H+ +QMRP   HIDE
Sbjct:   90 SNYAIGMIRQGQLHLTPVHSVLQMRPSLLHIDE 122          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A662Y8Q0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Q0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.370e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0
Query:    2 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            TN+A GV R  +LHLTP+ A MQMRP   HID+
Sbjct:  133 TNYAVGVFRQGQLHLTPVSAVMQMRPSLAHIDD 165          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A662XEC4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEC4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.370e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0
Query:    2 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            TN+A GV R  +LHLTP+ A MQMRP   HID+
Sbjct:   66 TNYAVGVFRQGQLHLTPVSAVMQMRPSLAHIDD 98          
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A5D6Y107_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y107_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.250e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    2 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 34
            TN+A GV+R  +LHLTP+ A +QMRP   HID+
Sbjct:   92 TNYAVGVVRQGQLHLTPVTAVLQMRPSLAHIDD 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FNL4_ECTSI3.960e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CI66_9STRA1.030e-660.61Sin-like protein conserved region-domain-containin... [more]
A0A197JWR2_9FUNG2.580e-655.88Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A2T7PWM1_POMCA9.180e-656.76RPC5_C domain-containing protein n=1 Tax=Pomacea c... [more]
A0A1Y2GBG1_9FUNG9.250e-652.94Sin-like protein conserved region-domain-containin... [more]
A0A3N4LBE4_9PEZI9.260e-660.61Uncharacterized protein n=1 Tax=Terfezia boudieri ... [more]
F0WMY9_9STRA9.270e-657.58DNAdirected RNA polymerase III subunit RPC5like pr... [more]
A0A662Y8Q0_9STRA2.370e-560.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XEC4_9STRA2.370e-560.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6Y107_9STRA3.250e-557.58Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006886DNA-directed RNA polymerase III subunit Rpc5PFAMPF04801Sin_Ncoord: 2..34
e-value: 3.6E-12
score: 46.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15171contigEcto-sp13_S_contig15171:2..103 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15171.3900.1mRNA_Ecto-sp13_S_contig15171.3900.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15171 2..103 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15171.3900.1 ID=prot_Ecto-sp13_S_contig15171.3900.1|Name=mRNA_Ecto-sp13_S_contig15171.3900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006886RNA_pol_III_Rpc5