mRNA_Ecto-sp13_S_contig15171.3900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15171.3900.1
Unique NamemRNA_Ecto-sp13_S_contig15171.3900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.960e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE
Sbjct:  146 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 179
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A836CI66_9STRA (Sin-like protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI66_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHID 99
            ATN+A GV+R +ELHLTP+   +QMRP F+H+D
Sbjct:   95 ATNYAIGVVRDNELHLTPLSGILQMRPAFRHVD 127
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A197JWR2_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JWR2_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 2.580e-6
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            ATN+  GV+R+DE+HLTPIH  +Q+RP F+++D+
Sbjct:  152 ATNYLAGVLRNDEMHLTPIHGAVQLRPSFKYLDK 185
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A2T7PWM1_POMCA (RPC5_C domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PWM1_POMCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.180e-6
Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 ATN---FAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            ATN   +A GV+++DELHLTP+HA +QMRP F ++D+
Sbjct:  111 ATNTQRYAVGVLKNDELHLTPVHAVVQMRPSFDYLDK 147
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A1Y2GBG1_9FUNG (Sin-like protein conserved region-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GBG1_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 9.250e-6
Identity = 18/34 (52.94%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            ATN+  GV+R+DE+HLTP H  +Q+RP F+++D+
Sbjct:  271 ATNYLAGVLRNDEMHLTPFHGAVQLRPSFKYLDK 304
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A3N4LBE4_9PEZI (Uncharacterized protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LBE4_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 9.260e-6
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 ATNFAFGVIRSDELHLTPIHATMQMRPCFQHID 99
            +TN+  GV R  +LHLTPIH+T+Q+RP F HID
Sbjct:  169 STNYMVGVFRHKQLHLTPIHSTLQLRPQFTHID 201
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: F0WMY9_9STRA (DNAdirected RNA polymerase III subunit RPC5like protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMY9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 9.270e-6
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            +N+A G+IR  +LHLTP+H+ +QMRP   HIDE
Sbjct:   90 SNYAIGMIRQGQLHLTPVHSVLQMRPSLLHIDE 122
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A662Y8Q0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Q0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.370e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            TN+A GV R  +LHLTP+ A MQMRP   HID+
Sbjct:  133 TNYAVGVFRQGQLHLTPVSAVMQMRPSLAHIDD 165
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A662XEC4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEC4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.370e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            TN+A GV R  +LHLTP+ A MQMRP   HID+
Sbjct:   66 TNYAVGVFRQGQLHLTPVSAVMQMRPSLAHIDD 98
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BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Match: A0A5D6Y107_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y107_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.250e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 TNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE 102
            TN+A GV+R  +LHLTP+ A +QMRP   HID+
Sbjct:   92 TNYAVGVVRQGQLHLTPVTAVLQMRPSLAHIDD 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15171.3900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FNL4_ECTSI3.960e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CI66_9STRA1.030e-660.61Sin-like protein conserved region-domain-containin... [more]
A0A197JWR2_9FUNG2.580e-655.88Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A2T7PWM1_POMCA9.180e-656.76RPC5_C domain-containing protein n=1 Tax=Pomacea c... [more]
A0A1Y2GBG1_9FUNG9.250e-652.94Sin-like protein conserved region-domain-containin... [more]
A0A3N4LBE4_9PEZI9.260e-660.61Uncharacterized protein n=1 Tax=Terfezia boudieri ... [more]
F0WMY9_9STRA9.270e-657.58DNAdirected RNA polymerase III subunit RPC5like pr... [more]
A0A662Y8Q0_9STRA2.370e-560.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XEC4_9STRA2.370e-560.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6Y107_9STRA3.250e-557.58Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15171contigEcto-sp13_S_contig15171:2..103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.0
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FNL4
Preferred namePOLR3E
Model size102
KEGG rclassRC00065,RC02795
KEGG koko:K00381,ko:K03026,ko:K14721
KEGG ReactionR00435,R00441,R00442,R00443,R00858
KEGG Pathwayko00230,ko00240,ko00920,ko01100,ko01120,ko03020,ko04623,ko05169,map00230,map00240,map00920,map01100,map01120,map03020,map04623,map05169
KEGG ModuleM00176,M00181
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.transcription by RNA polymerase III
EggNOG OGsKOG2354@1,KOG2354@2759
EC1.8.1.2
Cds size102
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.3606489-CDS-Ecto-sp13_S_contig15171:1..1031681462807.3606489-CDS-Ecto-sp13_S_contig15171:1..103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15171 2..103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15171.3900.1prot_Ecto-sp13_S_contig15171.3900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15171 2..103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15171.3900.1

>prot_Ecto-sp13_S_contig15171.3900.1 ID=prot_Ecto-sp13_S_contig15171.3900.1|Name=mRNA_Ecto-sp13_S_contig15171.3900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
ATNFAFGVIRSDELHLTPIHATMQMRPCFQHIDE
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mRNA from alignment at Ecto-sp13_S_contig15171:2..103-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15171.3900.1 ID=mRNA_Ecto-sp13_S_contig15171.3900.1|Name=mRNA_Ecto-sp13_S_contig15171.3900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15171:2..103- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCAACTTCGCGTTCGGCGTGATTCGGAGCGACGAGCTACATCTAAC
CCCGATCCACGCCACCATGCAGATGCGTCCCTGCTTTCAGCACATCGATG
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15171:2..103-

>mRNA_Ecto-sp13_S_contig15171.3900.1 ID=mRNA_Ecto-sp13_S_contig15171.3900.1|Name=mRNA_Ecto-sp13_S_contig15171.3900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15171:2..103- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCAACTTCGCGTTCGGCGTGATTCGGAGCGACGAGCTACATCTAAC
CCCGATCCACGCCACCATGCAGATGCGTCCCTGCTTTCAGCACATCGATG
AG
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