mRNA_Ecto-sp13_S_contig15169.3897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15169.3897.1
Unique NamemRNA_Ecto-sp13_S_contig15169.3897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15169.3897.1 vs. uniprot
Match: A0A6H5JEW1_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEW1_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 7.900e-103
Identity = 164/203 (80.79%), Postives = 164/203 (80.79%), Query Frame = 1 
Query:    1 DFTFQLDSARTAIKVTDRKQRARETFLEKGQLPAEGSSNPLLDLWNENYAVEIFYFPSSSLEITNVLSHEFEDQDWDEYDDICTLKIFNRTDNAVGK--------------------------------------IQNFGAKPALVSLYAKTAAKAFEPAFQTTGEVSYETSLAQAIHWQKYITDGLPVSDTEVCIKCDPDFT 495
            DFTFQLDSARTAIKVTDRKQRARETFLEKGQLPAEGSSNPLLDLWNENYAVEIFYFPSSSLEITNVLSHEFEDQDWDEYDDICTLKIFNRTDNAVGK                                      IQNFGAKPALVSLYAKTAAKAFEP FQTTGEVSYETSLAQAIHWQKYITDGLPVSDTEVCIKCDPDFT
Sbjct:  260 DFTFQLDSARTAIKVTDRKQRARETFLEKGQLPAEGSSNPLLDLWNENYAVEIFYFPSSSLEITNVLSHEFEDQDWDEYDDICTLKIFNRTDNAVGKDDDSFWGKDQKTSTRFDHNFSITDFLKINLGTKVALNLIQNFGAKPALVSLYAKTAAKAFEPVFQTTGEVSYETSLAQAIHWQKYITDGLPVSDTEVCIKCDPDFT 462
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BLAST of mRNA_Ecto-sp13_S_contig15169.3897.1 vs. uniprot
Match: A0A6H5L8C4_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8C4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.180e-25
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  253 LKIFNRTDNAVGKIQNFGAKPALVSLYAKTAAKAFEPAFQTTGEVSYETSLAQAIHWQKYITDGLPVSDTEVCIKCDPDFT 495
            LK+   T+  +  +  FG KPALV+ Y++TAAKAFEP  +  G+V YE SLAQAIHWQKYI+DG P SDTEVCIKCDPDFT
Sbjct:  371 LKVNLGTEVGLPLVAKFGDKPALVAFYSRTAAKAFEPVGKEFGQVHYEVSLAQAIHWQKYISDGYPTSDTEVCIKCDPDFT 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15169.3897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEW1_9PHAE7.900e-10380.79FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6H5L8C4_9PHAE8.180e-2564.20FAD-binding PCMH-type domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15169contigEcto-sp13_S_contig15169:143..4012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score337.0
Seed ortholog evalue4.9e-90
Seed eggNOG ortholog2880.D7FR14
Model size501
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E419@1,2SB01@2759
Cds size501
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.0226965-CDS-Ecto-sp13_S_contig15169:142..1781681462807.0226965-CDS-Ecto-sp13_S_contig15169:142..178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15169 143..178 -
1681462807.0363076-CDS-Ecto-sp13_S_contig15169:722..7761681462807.0363076-CDS-Ecto-sp13_S_contig15169:722..776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15169 723..776 -
1681462807.0442414-CDS-Ecto-sp13_S_contig15169:1824..19441681462807.0442414-CDS-Ecto-sp13_S_contig15169:1824..1944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15169 1825..1944 -
1681462807.0520284-CDS-Ecto-sp13_S_contig15169:3048..31361681462807.0520284-CDS-Ecto-sp13_S_contig15169:3048..3136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15169 3049..3136 -
1681462807.0604246-CDS-Ecto-sp13_S_contig15169:3809..40121681462807.0604246-CDS-Ecto-sp13_S_contig15169:3809..4012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15169 3810..4012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15169.3897.1prot_Ecto-sp13_S_contig15169.3897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15169 143..4012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15169.3897.1

>prot_Ecto-sp13_S_contig15169.3897.1 ID=prot_Ecto-sp13_S_contig15169.3897.1|Name=mRNA_Ecto-sp13_S_contig15169.3897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
DFTFQLDSARTAIKVTDRKQRARETFLEKGQLPAEGSSNPLLDLWNENYA
VEIFYFPSSSLEITNVLSHEFEDQDWDEYDDICTLKIFNRTDNAVGKIQN
FGAKPALVSLYAKTAAKAFEPAFQTTGEVSYETSLAQAIHWQKYITDGLP
VSDTEVCIKCDPDFTR*
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mRNA from alignment at Ecto-sp13_S_contig15169:143..4012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15169.3897.1 ID=mRNA_Ecto-sp13_S_contig15169.3897.1|Name=mRNA_Ecto-sp13_S_contig15169.3897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15169:143..4012- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCACGTTCCAGCTCGACAGCGCGCGCACCGCGATCAAGGTGACCGA
TCGCAAGCAGCGCGCTAGGGAGACCTTCCTGGAGAAGGGGCAGCTGCCGG
CGGAGGGGTCGAGCAACCCTTTGCTTGACCTGTGGAACGAGAACTACGCC
GTCGAGATCTTCTACTTCCCGTCTTCGAGCCTGGAGATCACCAACGTCCT
GAGGTGTGTGGGTACACATATTGGTACCGGAACTGTGTGTGTATCCTGTG
TGTGTTGATCGGCCGCGCTTGCCCGTTGACCAATGGAAAGACGTCAGTCT
CAGTGCGGTTGGGAACACAAAACACTTCGAAATAAATGCCGTGATCTGAA
GCCCCCCGTGTGCGCGCGCGTGTGTTACTGATGTCGCAGTGCATGGCAGA
CAGACAGAGACAGAGAGAGAGAGTGAGAGTGAGATAAGTGATGGCTCAAG
ACATGGGGGTTATAGTCTAAACAAGTACCGTAGGTGGCATAAAACATATC
ATCCCTTGCAGCGAGTTTCGGAGCTTGACTACTCCATAGAGCAGAGAGAG
AGAGAGAGGGAGAGAGAGTGGTCGTACCGAAAATGGTGGGGCGTTTGATC
CGTCTCGTCGAGATCTTACGCGGCGTTGATTTGTACATGCTTCATTGTTT
TGTGTGTTGACAAAAACGGTTGTTCTGAACATGAGGTTCTTGACCAGCCA
CCATGTTCTTTACTGCCAGAACAAGTTCTCAACTGCCAACCAAGGTCGTT
CGTTTCGCGGGCCAGCGGGCGCTATCTGTATTGTTTTTCACCGCCGTTGT
TCGACGTGTGAGTGGCCGGTGCTTGACGTGTCCTCCTTGCGTGGTGTGCC
GTGTCCTCCTACCCCCCCCGGAGCAGCCATGAGTTCGAAGATCAGGACTG
GGACGAGTACGACGACATCTGCACCCTCAAGATATTCAACCGTACGGACA
ACGCCGTCGGTAAGGTAAGCAAACGCCGCGGCGGTAATGTAAACAATTGC
ATATCCCGTCGGTATGGTAAGCAATTATCCTGTCGGCAATGTAAACAGTT
ATCTCGTCGGTAAGGTAGGAAATTACCCCGTCGGTATGGTAAACAAATAC
CCGGCCGCTAAGAGTTACCCCGCCCTTGGCATGGCAACACTGGGGTATAT
GACGCGGCATAGTTTTTTTTGGAGAACAAACAAACTCTTTTACAAGCAGG
AGGGAAGTGGTATTGGACAAGATCGAGGGAGGTATGCAACTTACTCCCAG
GGTATGGCTTTCCCGGGGTATAGGATGCGGTCTACAAGCAGGCGAGATGT
TTTTTCGTCAGTTTCTTCCAGCGCTCACTTTTACACAAGACATCTGCCGG
GTAACCATGTACTTAAGACAGAATGATGGGAAACGTTTTTGGACCACGTT
TGATGGAAAAGTAGGAAGGAATGATTGGCCATCGGATATCGGTCCTGTGG
GAACAATGCTCCGGCCTCTTGTGGTCACTGGTCTAACAGCTACGGCGATG
CAAAACATTAGAGTACGCCCCCCGCCCCCGTCCAGACCGTGCATTTGGTT
GGCGAAACAATAACAACAACAACAACCATATCGACACGACACTTTCGCCA
ACGAGCATGCTGAATCCTCGTCTTTTTTTCTTGCGACGCGACAGGACGAT
GACTCGTTCTGGGGGAAGGATCAGAAGACTTCCACGCGGTTCGACCACAA
CTTCAGCATCACCGACTTCCTCAAGATCAATCTAGGCACCAAAGTGGCAC
TCAACCTCGTGAGTTCTACCCCCCCCCCCATCCCCCCTCTCTGTCTGACC
GTCTTTCTGTCTCTCGCTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCGCTTTGTCTCGTGGCCTCAACGATATATCTCCTACATTCAGTTTGTT
TTTTCTCCCTGTACGTGTTTCGTGTCTTTGTCGTGTATTAATCCTTGCTG
TCATTCTCATGTATGTGTGCGTGCTCAACAGTCACAACAACAACAACAGC
ATCATCACCGCCATTTTCTGTGCTGCTGTTGTTTCCGGATGAACTACCCG
TGCCGATTTCCCCTACAGATTCAGAACTTCGGAGCGAAGCCCGCCCTGGT
GTCCCTTTACGCTAAGACAGCCGCCAAGGCCTTCGAGCCGGCCTTCCAGA
CCACAGGGGAAGTGTCCTACGAGACATCGCTGGCACAGGTAAGAGGAGGG
CGGGGAGGAGGAAGGGGCCTACCCATGTTTTGCATGTCTTAGCGGCTCGA
CCATTGACAACGCGTCCACGAGAGGAAAACGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGGGAGGACGAGGAGGAGGAGGAGGACGAGGAGTCAAGAGTCG
ATTAAACGTACCACGCGGCAAAAGGACGCTTCGTATTTAGCGTAACCCCA
CCAGCTTTCCCTTCTCCTCTTGTGAAGCAAGATCGACTTACATTCTGGCA
GATCACTCGTCGTCGTTTGTGTCCCTGCGGCATACGTCTATGTTGGCTGG
CGCAACGCAACACTTTTTCAGCATCTGAGGCTGACCATGTCGTGAATTGC
TTATACCGCAATTTACTCTTTACCGCTGTATGTACCCTTGTGTGCGATGT
TTTTCTATACGCCCGCCAGGAGAGAGTCGCGCGTTTTCCCCTCTGTTTTC
TTAACGCTTGCAGACGGTTGTTTTTCTTTTTGCGATGGGTACAGAGAGCA
CTATAATATCATAGCCGTGGAACTGCTATGCTGCTGTTGCCTGGCCGAAC
GGGACCTAGACTTAGCCCCCCTCCGAGTAACAGTCTAATGGTGGTATGCT
TACCCGTGTTGAGCGGCGGCCCGTTCATGCACCAGCCTGTTCGTTCCAGT
CCCGAGGCAGCACCTGCAATCCCACCACCCCCAGCGCGCGCCTCGAATTT
GACATGGGGATACACCGAATAGTATCATACCGAAAAGAGACCCCCGTCAC
TACCTTGCCTTAAGTCGACATCGGGTATAGTCTATGCGGACAAGAAAAAC
ATGTGGAGAGAGTCCGGATTGAATGCTAGATATATCAGAAATAGTGTTGT
AACTCCCGAAGTGTGTGGTAGTAATCCTTGCCCTCGCTTCCCTCTGCTTT
TTCTCGCGGCTTGATCAATGCTATGTACTTGCGTGTGCGCGCTGGTGGGT
TGTTTGCCGCGTGCTTGATTCGCCTGGTTGTGGAACGCGGTCGCGCCGAA
CTCGACCTCGACGTCGTACTCGACCTCGACCCCCAGGCGATCCACTGGCA
AAAGTACATCACCGACGGCCTCCCCGTGTCCGACACCGAGGTGAGGCAGA
AAAACACACATGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACG
GACATGTAGACGGAGGTTTTTTGGTCGATAGTGGTGGTAGTGCTTTGATA
TCTATCATCAAGGCCTCCGGTGTGTCTCAGGATGTGTCATTTGTTTTCTT
GCTGCAATCGTACTATGTAGTTATCTTATCTTACAGCAAATACGGTCTAC
GCCGTCGACAAGTTGCCGGACAACAAGTTCGTCTTTCCTCCGGCGGCTCG
GCGAAAAAAATCAAGGAGTCCTTTGACCGTCACTTTCCCGCCAATCGCAG
TTGTACTGTACAGGTTGGGTTTCTGCTTCTCGCTCTCATTTCTTCTGTCA
TCGAACACAGCACCACCCCAAAAGTCGAATGCTCTCGTCGGCGACAAGCA
TCTTCCCCCCCGATCGGATGGTCCGTCAGGTACACGTCGACGACGTGATC
ATCGCTCTTCTTTGTTCCTTGCGTCATTGTCGTCGATTTCGTTGTGCTAT
CTGTCGATATTCTGCTTCTTTTTTTTGTTGTCAGGTGTGCATAAAGTGCG
ATCCAGACTTCACCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15169:143..4012-

>mRNA_Ecto-sp13_S_contig15169.3897.1 ID=mRNA_Ecto-sp13_S_contig15169.3897.1|Name=mRNA_Ecto-sp13_S_contig15169.3897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15169:143..4012- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCACGTTCCAGCTCGACAGCGCGCGCACCGCGATCAAGGTGACCGA
TCGCAAGCAGCGCGCTAGGGAGACCTTCCTGGAGAAGGGGCAGCTGCCGG
CGGAGGGGTCGAGCAACCCTTTGCTTGACCTGTGGAACGAGAACTACGCC
GTCGAGATCTTCTACTTCCCGTCTTCGAGCCTGGAGATCACCAACGTCCT
GAGCCATGAGTTCGAAGATCAGGACTGGGACGAGTACGACGACATCTGCA
CCCTCAAGATATTCAACCGTACGGACAACGCCGTCGGTAAGATTCAGAAC
TTCGGAGCGAAGCCCGCCCTGGTGTCCCTTTACGCTAAGACAGCCGCCAA
GGCCTTCGAGCCGGCCTTCCAGACCACAGGGGAAGTGTCCTACGAGACAT
CGCTGGCACAGGCGATCCACTGGCAAAAGTACATCACCGACGGCCTCCCC
GTGTCCGACACCGAGGTGTGCATAAAGTGCGATCCAGACTTCACCAGGTA
A
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