mRNA_Ecto-sp13_S_contig15165.3895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: D7FU74_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU74_ECTSI) HSP 1 Score: 145 bits (366), Expect = 5.310e-43 Identity = 101/109 (92.66%), Postives = 101/109 (92.66%), Query Frame = 1
Query: 1 MSDFAQLAAKAKEDGVAAAAAPVDTXXXXXXXXXXXXXXXXXXXXEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL 327
MSDFAQLAAKAKEDGVAA XXXXXXXXXXXXXXXXXXXX EESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL
Sbjct: 1 MSDFAQLAAKAKEDGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL 109
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE) HSP 1 Score: 137 bits (345), Expect = 3.930e-38 Identity = 97/110 (88.18%), Postives = 97/110 (88.18%), Query Frame = 1
Query: 1 MSDFAQLAAKAKEDGVAAAAAPVDTXXXXXXXXXXXXXXXXXXXXEEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
MSDFAQLAAKAKEDG XXXXXXXXXXXXXXXXXXXX STAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ
Sbjct: 1 MSDFAQLAAKAKEDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 110
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A7S2XZR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZR9_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.280e-27 Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 142 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
ESTA FEPVVQL+E+EVKTHEE+EEVLWK R KLF+FGETLLNKGTGQK W ERGIGE KFL+
Sbjct: 68 ESTAHFEPVVQLDEIEVKTHEEEEEVLWKWRGKLFVFGETLLNKGTGQKTWNERGIGEFKFLK 130
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.270e-25 Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
E E T FEPVVQL+EVEVKTHEEDE+VL+KMRAKLF+FGETLLNKG+G K W ERG+GEVKFL+
Sbjct: 42 EAECTTVFEPVVQLDEVEVKTHEEDEQVLYKMRAKLFVFGETLLNKGSGTKTWNERGVGEVKFLK 106
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.430e-23 Identity = 48/64 (75.00%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 139 EESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
+ESTA+F PVVQL+EVEVKTHEEDE+V +K+RAKLF F ETLLNKG+G+KEW+ERG+GEVK L+
Sbjct: 93 QESTAEFTPVVQLDEVEVKTHEEDEDVDFKIRAKLFRFSETLLNKGSGKKEWIERGVGEVKILK 156
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A6S8ZTG3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZTG3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 8.270e-23 Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
EEESTA F+PVV+LEEVEVK+ EEDEEV++ MRAKLF+FGETLL+KGTG K W ERGIGE + L+
Sbjct: 26 EEESTATFKPVVELEEVEVKSGEEDEEVVFSMRAKLFLFGETLLDKGTGNKSWRERGIGEARILR 90
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A7S3NPI9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPI9_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.680e-22 Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
E EST +F PVVQL+EVEVKT EEDEE+++KMRA+L+ F ETLLNKGTG+KEW+ERG+GE K L+
Sbjct: 79 EAESTQEFTPVVQLDEVEVKTLEEDEEIIFKMRARLYRFAETLLNKGTGKKEWIERGVGEAKLLK 143
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A7S0C0M0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0M0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.280e-22 Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
EEESTA FEPVV+LEEVE K+ EEDEE+L MR KLF++GETLL+KGTG+K W ERGIGE++ L+
Sbjct: 35 EEESTATFEPVVRLEEVETKSGEEDEEILHGMRCKLFVYGETLLDKGTGKKSWRERGIGEIRLLK 99
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A7R9ZPH3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPH3_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.400e-21 Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
E+ESTAQFEPVV+LEEV+VK+ EEDEEV++ +R+KLFIFGETLL+ GTG K W ERGIGE K L+
Sbjct: 91 EDESTAQFEPVVKLEEVDVKSGEEDEEVVYGIRSKLFIFGETLLDVGTGNKSWKERGIGEAKILR 155
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Match: A0A7S2EXM6_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EXM6_TRICV) HSP 1 Score: 92.8 bits (229), Expect = 3.400e-21 Identity = 46/65 (70.77%), Postives = 58/65 (89.23%), Query Frame = 1
Query: 136 EEESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 330
EEESTA FEPVV+L+EVEV++ EEDEEV++ +R+KLFI+GETLL+KGTG+K W ERGIGE K L+
Sbjct: 22 EEESTATFEPVVKLDEVEVQSGEEDEEVVFGVRSKLFIYGETLLDKGTGKKTWRERGIGEAKILR 86 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15165.3895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15165.3895.1 >prot_Ecto-sp13_S_contig15165.3895.1 ID=prot_Ecto-sp13_S_contig15165.3895.1|Name=mRNA_Ecto-sp13_S_contig15165.3895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp MSDFAQLAAKAKEDGVAAAAAPVDTTSETAAPASAAVDEGAGAAAEEESTback to top mRNA from alignment at Ecto-sp13_S_contig15165:581..2414+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15165.3895.1 ID=mRNA_Ecto-sp13_S_contig15165.3895.1|Name=mRNA_Ecto-sp13_S_contig15165.3895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15165:581..2414+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15165:581..2414+ >mRNA_Ecto-sp13_S_contig15165.3895.1 ID=mRNA_Ecto-sp13_S_contig15165.3895.1|Name=mRNA_Ecto-sp13_S_contig15165.3895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15165:581..2414+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |